Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

11118693 .. 11122552

Gene Structure 3860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAAGAGTACGTCAGAGAAGCTCCCTGTGTCTCAATAGTTCGCAAGGAGGAAATCTTGGCCATAGAGGACAAAAAGACCCAAGACGATGAGGCACGTCCACCTTCCCCACCTCCACCTAAACCAGTAAAAGTGGTAGCACTTGTAGTTGAACCACTTGATTTCCTGGGTTTGAATGATCCCGTTCCCGATACTGCAGCATTAGATGAGAAGAATGCCATGGCTTTAGCTATTGTTCCACTGATCAGCCTGCGGCTCAACCTCAAGCAAATGGAACAGGTTGGGGATTGGCACTTGTTACAGCCCCAAGCTCAAATGAGAGTGCCACAGCTACTAGCAAACTGCAACAGGAGGGAGAGTGGGTGCTTAAGGGTGGCCAACATAATCTTTATAGATGCACCAGTTGGTGCTGGGTTTTCATACTCTACAACCTCGGAAGGGTACTATACTTCCGATACAAAATCAGCTGCACAGACCTATACTTTCTTAAGAAAGGGAAGGAGAAAAGAATCACAATGGTTATATGCACACCCAAGGTTTCAGGGAAATCAACTGTACATTGGTGGTGACTCATATTCAGAACTTATTGTTCCCATTCTTCTTAAGAATATACTAGAAGGTCACAGTCGGTCAAATGTTTATAGTCTGGGTCAAGGCCAAGAATGCAACTCCAACTTGAAACAGGGATACTTGCTTGGAAATCCAGTTTCAGATTCTTTTATTGATGTAAATGAGAGAATCCCATATGTTCACCGAGTGTCACTCATTTCAGATGAAATCTATGAGGCTGCTAAAACTAATTGCAGTGGGGACTATGTCAATGTGGAACTTAACAATACACTTTGTGTTACTGCTCTTCAAAAAATTAAAGATTGTCTTCTACAAATAAATCTTGCACAAATTTTGGAACCCCAATGTGCTTTTGCATCTGGTAGAACAACTGAGTTGGATGGGATCTTAGAGCTCGAGAAGCAAATACTTTTCACGAAGAGAAGAGCAAACGTGACTATGGAATTGTTGGCTGTGGCATATTCGTCCCTTGTAGCCAAAATGGAGGAGATTATATATAGGTTGGTCATGCTGGAATTTTCAGCCACACAGAAGTATTCTCTTGCATCTAATTCAACTTACAATGTGGAAGAGGCCGGTGATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

385

Amino Acids

42.99

Weight (kDa)

5.14

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	124 - 323	7.6e-37	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	2 cut(s)	173, 962
AcoI	YGGCCR	2 cut(s)	60, 375
AcsI	RAATTY	2 cut(s)	900, 1085
AdeI	CACNNNGTG	2 cut(s)	757, 845
AfaI	GTAC	3 cut(s)	11, 443, 557
AfiI	CCNNNNNNNGG	1 cut(s)	438
AflII	CTTAAG	3 cut(s)	367, 487, 602
AgsI	TTSAA	5 cut(s)	152, 175, 679, 860, 1125
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	6 cut(s)	23, 230, 311, 331, 467, 964
AluI	AGCT	6 cut(s)	23, 230, 311, 331, 467, 964
Alw21I	GWGCWC	1 cut(s)	966
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	173, 962
Ama87I	CYCGRG	1 cut(s)	965
AoxI	GGCC	4 cut(s)	60, 375, 655, 1143
ApeKI	GCWGC	3 cut(s)	197, 467, 788
ApoI	RAATTY	2 cut(s)	900, 1085
AsuHPI	GGTGA	2 cut(s)	578, 743
AvaI	CYCGRG	1 cut(s)	965
BalI	TGGCCA	2 cut(s)	62, 377
BanII	GRGCYC	1 cut(s)	966
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	1 cut(s)	966
BbvI	GCAGC	3 cut(s)	209, 454, 775
BccI	CCATC	1 cut(s)	944
BciT130I	CCWGG	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	680
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	335, 614
BfmI	CTRYAG	1 cut(s)	195
BfrI	CTTAAG	3 cut(s)	367, 487, 602
BfuI	GTATCC	1 cut(s)	680
BisI	GCNGC	4 cut(s)	198, 254, 468, 789
BlsI	GCNGC	4 cut(s)	199, 255, 469, 790
Bme1390I	CCNGG	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	965
BmgBI	CACGTC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	909
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	385, 935, 1124
BpiI	GAAGAC	1 cut(s)	869
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	166, 219, 432, 533
BsaXI	ACNNNNNCTCC	4 cut(s)	343, 347, 373, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse118I	RCCGGY	1 cut(s)	1145
Bse1I	ACTGG	3 cut(s)	125, 401, 704
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	4 cut(s)	166, 219, 432, 533
BseGI	GGATG	1 cut(s)	955
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	933
BseNI	ACTGG	3 cut(s)	125, 401, 704
BseRI	GAGGAG	1 cut(s)	1070
BseXI	GCAGC	3 cut(s)	209, 454, 775
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	4 cut(s)	62, 377, 657, 1145
BsiHKAI	GWGCWC	1 cut(s)	966
BsiHKCI	CYCGRG	1 cut(s)	965
BsiSI	CCGG	1 cut(s)	1146
BslFI	GGGAC	2 cut(s)	824, 1021
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	824, 1021
BsmI	GAATGC	2 cut(s)	220, 668
BsnI	GGCC	4 cut(s)	62, 377, 657, 1145
BsoBI	CYCGRG	1 cut(s)	965
Bsp1286I	GDGCHC	1 cut(s)	966
Bsp1407I	TGTACA	1 cut(s)	555
Bsp143I	GATC	4 cut(s)	178, 243, 954, 1150
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	4 cut(s)	62, 377, 657, 1145
BspCNI	CTCAG	1 cut(s)	934
BspLI	GGNNCC	1 cut(s)	909
BspMAI	CTGCAG	1 cut(s)	199
BspPI	GGATC	2 cut(s)	173, 962
BspQI	GCTCTTC	2 cut(s)	861, 988
BspTI	CTTAAG	3 cut(s)	367, 487, 602
BsrFI	RCCGGY	1 cut(s)	1145
BsrGI	TGTACA	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	125, 401, 704
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	4 cut(s)	166, 219, 432, 533
BssMI	GATC	4 cut(s)	178, 243, 954, 1150
BssT1I	CCWWGG	2 cut(s)	219, 533
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	555, 626
Bst6I	CTCTTC	4 cut(s)	861, 983, 988, 1134
BstAFI	CTTAAG	3 cut(s)	367, 487, 602
BstAUI	TGTACA	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	942, 958
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	955
BstKTI	GATC	4 cut(s)	181, 246, 957, 1153
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	4 cut(s)	178, 243, 954, 1150
BstMWI	GCNNNNNNNGC	2 cut(s)	663, 970
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	3 cut(s)	209, 454, 775
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	954
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	4 cut(s)	62, 377, 657, 1145
BtgI	CCRYGG	1 cut(s)	219
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	955
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	2 cut(s)	239, 811
Cac8I	GCNNGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	1145
Csp6I	GTAC	3 cut(s)	10, 442, 556
CviAII	CATG	2 cut(s)	220, 1078
CviQI	GTAC	3 cut(s)	10, 442, 556
DdeI	CTNAG	2 cut(s)	942, 958
DpnI	GATC	4 cut(s)	180, 245, 956, 1152
DpnII	GATC	4 cut(s)	178, 243, 954, 1150
DraIII	CACNNNGTG	2 cut(s)	757, 845
EaeI	YGGCCR	2 cut(s)	60, 375
Eam1104I	CTCTTC	4 cut(s)	861, 983, 988, 1134
EarI	CTCTTC	4 cut(s)	861, 983, 988, 1134
Ecl136II	GAGCTC	1 cut(s)	964
Eco130I	CCWWGG	2 cut(s)	219, 533
Eco24I	GRGCYC	1 cut(s)	966
Eco53kI	GAGCTC	1 cut(s)	964
Eco88I	CYCGRG	1 cut(s)	965
EcoICRI	GAGCTC	1 cut(s)	964
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	219, 533
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	219, 533
FaeI	CATG	2 cut(s)	223, 1081
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FaqI	GGGAC	2 cut(s)	824, 1021
FatI	CATG	2 cut(s)	219, 1077
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	4 cut(s)	198, 254, 468, 789
FokI	GGATG	1 cut(s)	962
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	4 cut(s)	198, 254, 468, 789
FspBI	CTAG	2 cut(s)	335, 614
GluI	GCNGC	4 cut(s)	198, 254, 468, 789
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	4 cut(s)	62, 377, 657, 1145
HapII	CCGG	1 cut(s)	1146
Hin1II	CATG	2 cut(s)	223, 1081
HinfI	GANTC	4 cut(s)	509, 569, 713, 738
HpaII	CCGG	1 cut(s)	1146
HphI	GGTGA	2 cut(s)	578, 743
Hpy166II	GTNNAC	2 cut(s)	101, 751
Hpy188I	TCNGA	6 cut(s)	17, 436, 454, 580, 712, 772
Hpy188III	TCNNGA	3 cut(s)	188, 967, 985
Hpy8I	GTNNAC	2 cut(s)	101, 751
HpyAV	CCTTC	4 cut(s)	114, 431, 492, 611
HpyCH4III	ACNGT	2 cut(s)	555, 626
HpyCH4IV	ACGT	3 cut(s)	12, 97, 1002
HpyF10VI	GCNNNNNNNGC	2 cut(s)	663, 970
HpyF3I	CTNAG	2 cut(s)	942, 958
HpySE526I	ACGT	3 cut(s)	12, 97, 1002
Hsp92II	CATG	2 cut(s)	223, 1081
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	4 cut(s)	178, 243, 954, 1150
LguI	GCTCTTC	2 cut(s)	861, 988
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	209, 454, 775
LweI	GCATC	3 cut(s)	385, 935, 1124
MaeI	CTAG	2 cut(s)	335, 614
MaeII	ACGT	3 cut(s)	12, 97, 1002
MaeIII	GTNAC	6 cut(s)	297, 566, 620, 759, 847, 1003
MalI	GATC	4 cut(s)	180, 245, 956, 1152
MboI	GATC	4 cut(s)	178, 243, 954, 1150
MboII	GAAGA	8 cut(s)	17, 223, 590, 848, 869, 1000, 1005, 1151
MflI	RGATCY	1 cut(s)	954
MhlI	GDGCHC	1 cut(s)	966
MlsI	TGGCCA	2 cut(s)	62, 377
MluCI	AATT	6 cut(s)	799, 864, 900, 1013, 1085, 1120
MluNI	TGGCCA	2 cut(s)	62, 377
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	696, 927
Mox20I	TGGCCA	2 cut(s)	62, 377
MscI	TGGCCA	2 cut(s)	62, 377
MseI	TTAA	5 cut(s)	368, 488, 603, 831, 867
Msp20I	TGGCCA	2 cut(s)	62, 377
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	3 cut(s)	367, 487, 602
MspI	CCGG	1 cut(s)	1146
MspR9I	CCNGG	1 cut(s)	167
Mva1269I	GAATGC	2 cut(s)	220, 668
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	663, 970
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	4 cut(s)	178, 243, 954, 1150
NlaIII	CATG	2 cut(s)	223, 1081
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	4 cut(s)	566, 620, 759, 1003
PaeR7I	CTCGAG	1 cut(s)	965
PciSI	GCTCTTC	2 cut(s)	861, 988
PctI	GAATGC	2 cut(s)	220, 668
PfeI	GAWTC	3 cut(s)	509, 713, 738
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	4 cut(s)	199, 255, 469, 790
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	966
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	909
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	954
PsyI	GACNNNGTC	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	11, 443, 557
RsaNI	GTAC	3 cut(s)	10, 442, 556
SacI	GAGCTC	1 cut(s)	966
SapI	GCTCTTC	2 cut(s)	861, 988
SaqAI	TTAA	5 cut(s)	368, 488, 603, 831, 867
SatI	GCNGC	4 cut(s)	198, 254, 468, 789
Sau3AI	GATC	4 cut(s)	178, 243, 954, 1150
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	966
SfaNI	GCATC	3 cut(s)	385, 935, 1124
SfcI	CTRYAG	1 cut(s)	195
Sfr274I	CTCGAG	1 cut(s)	965
SlaI	CTCGAG	1 cut(s)	965
SmlI	CTYRAG	5 cut(s)	263, 367, 487, 602, 965
SmoI	CTYRAG	5 cut(s)	263, 367, 487, 602, 965
Sse9I	AATT	6 cut(s)	799, 864, 900, 1013, 1085, 1120
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	2 cut(s)	335, 614
SstI	GAGCTC	1 cut(s)	966
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	2 cut(s)	219, 533
TaaI	ACNGT	2 cut(s)	555, 626
TaiI	ACGT	3 cut(s)	15, 100, 1005
TaqI	TCGA	1 cut(s)	966
TaqII	GACCGA	1 cut(s)	618
TasI	AATT	6 cut(s)	799, 864, 900, 1013, 1085, 1120
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	3 cut(s)	509, 713, 738
Tru1I	TTAA	5 cut(s)	368, 488, 603, 831, 867
Tru9I	TTAA	5 cut(s)	368, 488, 603, 831, 867
TscAI	CASTG	2 cut(s)	246, 811
TseFI	GTSAC	4 cut(s)	566, 620, 759, 1003
TseI	GCWGC	3 cut(s)	197, 467, 788
Tsp45I	GTSAC	4 cut(s)	566, 620, 759, 1003
TspDTI	ATGAA	2 cut(s)	408, 789
TspRI	CASTG	2 cut(s)	246, 811
Tth111I	GACNNNGTC	1 cut(s)	815
Vha464I	CTTAAG	3 cut(s)	367, 487, 602
XapI	RAATTY	2 cut(s)	900, 1085
XhoI	CTCGAG	1 cut(s)	965
XspI	CTAG	2 cut(s)	335, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.