Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

32595838 .. 32600275

Gene Structure 4438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1240900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCTTGTTTCTCTTGCTTGTTTAAAAAGAAGGAAGCTTCCCTTGTTAAGCAGCCTGTTGAAATCGATGAAGTGGTTTCAGGCGTTTTGAATGTCAAACAGTACACTTACATGGAACTGCAAATTGCCACTGAGAACTTCAGTAAAGAAAATAAAATTGGTCAGGGAGGCTTTGGCTCCGTGTACAAGGGAACACTAAGGGATGGCACTTTGGCGGCTATAAAAGTATTGTCAGCAGAGTCTAGTCAAGGGTCGAGGGAATTTTTGACAGAAATCGAGGTGATTGCAACCATTGAACACGATAGCCTAGTTAAGCTATATGGTTGCTGTGCAGAAGGAGATCACAGAATATTGGTTTATGGCTATCTCGAGAATAATAGCCTAGCACAAACACTTCTGGGTAGAGGCTACAGCGGTATCCAATTTACTTGGCCTACAAGGTGTAAAATTTGCATTGGTGTTGCAAGGGGGCTCACTTATCTCCATGAGGAGGTTAGCCCTCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTCCTTGATAAAGACCTCTCACCAAAAATTTCAGATTTTGGTCTTGCAAAGTTTATCGCACCGAACTTGACCCATCTTAGCACTCGTGTTGCTGGAACAACAGGCTACTTGGCGCCTGAGTATGCGATACGAGGTCAAGTGACAAGGAAATCAGACATCTACAGTTTTGGCGTTTTACTGTTGGAAATTGTATGTGGGAGGTGTAACACAAACAGACATTTACCACCCAAAGAACAATATCTTCTTGCACTGGCATGGGAACATCATCAGAAGGAGCAGCTGGTGGAGTTGGTAGACGCTTCATTGAATGGAAATTTTGACGTTGAGGAGGCTTGCAGATTCCTAAAGATTGGCCTTCTCTGCATTCAAGACATGCCCAAGCTCCGACCATCCATGTCTACCGTTGTTCAAATGCTGACGGGTGCATTAGATGTGAATGAGGGGCAGATATCCAAACCAGGACTGCTTTCTGAATTTATGGAGCAAAGAGAATGCGACAGAGAAAAGGCCAAAGCAAAAAATCCATCTTACACGATATCCGCCTCAGGGAGGTTTATGAATTCATCATCTTCATCAGAAACTGCCACCACTTCATTTGCTACTATGACCTTCAATTCTATATATGACCGAAGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

43.37

Weight (kDa)

6.52

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 316	7.1e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 318	1.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	2 cut(s)	831, 935
AciI	CCGC	3 cut(s)	215, 414, 1077
AcsI	RAATTY	6 cut(s)	260, 447, 564, 850, 1010, 1096
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	650
AfaI	GTAC	2 cut(s)	104, 185
AfiI	CCNNNNNNNGG	3 cut(s)	490, 1083, 1086
AgsI	TTSAA	7 cut(s)	62, 91, 296, 844, 905, 947, 1150
AjnI	CCWGG	1 cut(s)	994
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	38, 316, 817, 919
AluI	AGCT	4 cut(s)	38, 316, 817, 919
Alw26I	GTCTC	1 cut(s)	510
AlwNI	CAGNNNCTG	1 cut(s)	1118
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	431, 889, 1044
ApeKI	GCWGC	2 cut(s)	52, 814
ApoI	RAATTY	6 cut(s)	260, 447, 564, 850, 1010, 1096
AspLEI	GCGC	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	292, 549
AvaI	CYCGRG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	1081
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	64, 826
BccI	CCATC	4 cut(s)	197, 618, 934, 1069
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	996
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	3 cut(s)	243, 308, 383
BfmI	CTRYAG	2 cut(s)	409, 697
BfoI	RGCGCY	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	3 cut(s)	53, 216, 815
BlsI	GCNGC	3 cut(s)	54, 217, 816
Bme1390I	CCNGG	1 cut(s)	996
BmeT110I	CYCGRG	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	178, 651
BmrFI	CCNGG	1 cut(s)	996
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 1083, 1086
Bse1I	ACTGG	1 cut(s)	792
Bse21I	CCTNAGG	1 cut(s)	1081
BseBI	CCWGG	1 cut(s)	996
BseCI	ATCGAT	1 cut(s)	66
BseGI	GGATG	2 cut(s)	208, 926
BseLI	CCNNNNNNNGG	3 cut(s)	490, 1083, 1086
BseMII	CTCAG	3 cut(s)	123, 645, 1095
BseNI	ACTGG	1 cut(s)	792
BseRI	GAGGAG	2 cut(s)	503, 878
BseXI	GCAGC	2 cut(s)	64, 826
BsgI	GTGCAG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	433, 891, 1046
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	368
BslI	CCNNNNNNNGG	3 cut(s)	490, 1083, 1086
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	2 cut(s)	900, 1034
BsnI	GGCC	3 cut(s)	433, 891, 1046
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	215, 414, 1077
BspANI	GGCC	3 cut(s)	433, 891, 1046
BspCNI	CTCAG	3 cut(s)	124, 646, 1094
BspDI	ATCGAT	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	178, 651
BspT107I	GGYRCC	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	792
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	650
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	4 cut(s)	102, 701, 717, 940
BstACI	GRCGYC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	529, 871
BstDEI	CTNAG	5 cut(s)	132, 197, 614, 654, 1081
BstENI	CCTNNNNNAGG	1 cut(s)	1084
BstF5I	GGATG	2 cut(s)	208, 926
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	1 cut(s)	897
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	994
BstSFI	CTRYAG	2 cut(s)	409, 697
BstV1I	GCAGC	2 cut(s)	64, 826
Bsu15I	ATCGAT	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	1081
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	433, 891, 1046
BsuTUI	ATCGAT	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	208, 926
BtsIMutI	CAGTG	2 cut(s)	129, 785
Cac8I	GCNNGC	2 cut(s)	529, 871
CaiI	CAGNNNCTG	1 cut(s)	1118
CfoI	GCGC	1 cut(s)	652
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	2 cut(s)	103, 184
CspCI	CAANNNNNGTGG	2 cut(s)	1114, 1149
CviAII	CATG	5 cut(s)	112, 485, 792, 910, 931
CviQI	GTAC	2 cut(s)	103, 184
DdeI	CTNAG	5 cut(s)	132, 197, 614, 654, 1081
DinI	GGCGCC	1 cut(s)	651
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
DraI	TTTAAA	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	2 cut(s)	987, 1074
Eco57I	CTGAAG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	1081
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	1084
EcoRI	GAATTC	1 cut(s)	1096
EcoRII	CCWGG	1 cut(s)	994
EcoRV	GATATC	2 cut(s)	987, 1074
EcoT38I	GRGCYC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
FaeI	CATG	5 cut(s)	115, 488, 795, 913, 934
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FatI	CATG	5 cut(s)	111, 484, 791, 909, 930
FblI	GTMKAC	2 cut(s)	831, 935
Fnu4HI	GCNGC	3 cut(s)	53, 216, 815
FokI	GGATG	2 cut(s)	215, 913
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	3 cut(s)	53, 216, 815
FspBI	CTAG	3 cut(s)	243, 308, 383
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	3 cut(s)	53, 216, 815
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	3 cut(s)	433, 891, 1046
HgaI	GACGC	1 cut(s)	842
HhaI	GCGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	5 cut(s)	115, 488, 795, 913, 934
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	239, 876
HphI	GGTGA	2 cut(s)	292, 549
Hpy166II	GTNNAC	4 cut(s)	105, 184, 832, 936
Hpy188I	TCNGA	6 cut(s)	571, 691, 807, 923, 1009, 1114
Hpy188III	TCNNGA	3 cut(s)	368, 370, 905
Hpy8I	GTNNAC	4 cut(s)	105, 184, 832, 936
HpyAV	CCTTC	5 cut(s)	25, 329, 802, 902, 1156
HpyCH4III	ACNGT	4 cut(s)	102, 701, 717, 940
HpyCH4IV	ACGT	1 cut(s)	858
HpyF10VI	GCNNNNNNNGC	1 cut(s)	897
HpyF3I	CTNAG	5 cut(s)	132, 197, 614, 654, 1081
HpySE526I	ACGT	1 cut(s)	858
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	5 cut(s)	115, 488, 795, 913, 934
HspAI	GCGC	1 cut(s)	650
KasI	GGCGCC	1 cut(s)	649
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	4 cut(s)	182, 811, 924, 1018
Lsp1109I	GCAGC	2 cut(s)	64, 826
MaeI	CTAG	3 cut(s)	243, 308, 383
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	2 cut(s)	676, 740
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	2 cut(s)	770, 1098
MhlI	GDGCHC	1 cut(s)	474
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	699, 946
MseI	TTAA	4 cut(s)	24, 48, 312, 522
MslI	CAYNNNNRTG	2 cut(s)	110, 790
MspA1I	CMGCKG	2 cut(s)	414, 817
MspR9I	CCNGG	1 cut(s)	996
Mva1269I	GAATGC	2 cut(s)	900, 1034
MvaI	CCWGG	1 cut(s)	996
MwoI	GCNNNNNNNGC	1 cut(s)	897
NarI	GGCGCC	1 cut(s)	650
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	5 cut(s)	115, 488, 795, 913, 934
NlaIV	GGNNCC	2 cut(s)	178, 651
NmuCI	GTSAC	1 cut(s)	676
NspI	RCATGY	1 cut(s)	913
PaeR7I	CTCGAG	1 cut(s)	368
PctI	GAATGC	2 cut(s)	900, 1034
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	3 cut(s)	54, 217, 816
PleI	GAGTC	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	2 cut(s)	178, 651
PstNI	CAGNNNCTG	1 cut(s)	1118
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	104, 185
RsaNI	GTAC	2 cut(s)	103, 184
RseI	CAYNNNNRTG	2 cut(s)	110, 790
SaqAI	TTAA	4 cut(s)	24, 48, 312, 522
SatI	GCNGC	3 cut(s)	53, 216, 815
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	996
SduI	GDGCHC	1 cut(s)	474
SfcI	CTRYAG	2 cut(s)	409, 697
SfoI	GGCGCC	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	110, 790
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	3 cut(s)	215, 414, 1077
SspDI	GGCGCC	1 cut(s)	649
SspI	AATATT	2 cut(s)	351, 535
SspMI	CTAG	3 cut(s)	243, 308, 383
StyD4I	CCNGG	1 cut(s)	994
TaaI	ACNGT	4 cut(s)	102, 701, 717, 940
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	4 cut(s)	66, 254, 276, 369
TatI	WGTACW	2 cut(s)	102, 183
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	4 cut(s)	24, 48, 312, 522
Tru9I	TTAA	4 cut(s)	24, 48, 312, 522
TscAI	CASTG	2 cut(s)	136, 792
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	2 cut(s)	52, 814
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	6 cut(s)	84, 828, 1089, 1098, 1109, 1119
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	2 cut(s)	136, 792
XagI	CCTNNNNNAGG	1 cut(s)	1084
XapI	RAATTY	6 cut(s)	260, 447, 564, 850, 1010, 1096
XceI	RCATGY	1 cut(s)	913
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	831, 935
XspI	CTAG	3 cut(s)	243, 308, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.