Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

11109893 .. 11110978

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTTGTAAATGTACATGGATCTATGAAGACTGTTATAGATTGTCTTTTAACACTTAGAACAGAACTTGGGTCAAGTGTTGCAGCAGAAGGTTTTTCTCTGTTTAGTCCAACTGTTGACAAACTTTTAGATTTTGTTTTCTTCAAACAGTTGATCTTTGACGCAACTTTACCTTCCACAGAGCCATCAGCAGAACTAATGCATCATGTTGGACATAAGTTCCATGAGGTATTTCAGATAAGACAAGGATGCTACGCGGATCTTCCTGCTGCAAAGATCTCAGAAATGATGAAATCCAACAGTTTAGATCAGTCTATTGTTGAAGATGATGAGCTCCCTCAATTCAATACTAATGCAGTAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

121

Amino Acids

13.45

Weight (kDa)

4.86

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	2 cut(s)	28, 267
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	3 cut(s)	145, 323, 346
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	336
AlwI	GGATC	2 cut(s)	28, 267
ApeKI	GCWGC	2 cut(s)	83, 269
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	95, 256
BccI	CCATC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	84, 270
BlsI	GCNGC	2 cut(s)	85, 271
BmsI	GCATC	2 cut(s)	211, 239
BpiI	GAAGAC	1 cut(s)	35
BseGI	GGATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	95, 256
Bsh1236I	CGCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	20, 153, 259, 276, 307
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	257
BspPI	GGATC	2 cut(s)	28, 267
BsrGI	TGTACA	1 cut(s)	13
BssMI	GATC	5 cut(s)	20, 153, 259, 276, 307
Bst4CI	ACNGT	4 cut(s)	34, 115, 150, 302
BstAUI	TGTACA	1 cut(s)	13
BstDEI	CTNAG	2 cut(s)	56, 280
BstF5I	GGATG	1 cut(s)	254
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	5 cut(s)	23, 156, 262, 279, 310
BstMBI	GATC	5 cut(s)	20, 153, 259, 276, 307
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	95, 256
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	3 cut(s)	20, 259, 276
BstYI	RGATCY	3 cut(s)	20, 259, 276
BtsCI	GGATG	1 cut(s)	254
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	3 cut(s)	17, 206, 224
CviJI	RGCY	2 cut(s)	184, 334
CviKI_1	RGCY	2 cut(s)	184, 334
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	2 cut(s)	56, 280
DpnI	GATC	5 cut(s)	22, 155, 261, 278, 309
DpnII	GATC	5 cut(s)	20, 153, 259, 276, 307
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	3 cut(s)	20, 209, 227
FaiI	YATR	6 cut(s)	18, 26, 38, 207, 216, 225
FatI	CATG	3 cut(s)	16, 205, 223
Fnu4HI	GCNGC	2 cut(s)	84, 270
FokI	GGATG	1 cut(s)	261
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	84, 270
GluI	GCNGC	2 cut(s)	84, 270
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	20, 209, 227
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	237, 283
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	83, 183
HpyCH4III	ACNGT	4 cut(s)	34, 115, 150, 302
HpyCH4V	TGCA	4 cut(s)	83, 202, 272, 356
HpyF3I	CTNAG	2 cut(s)	56, 280
Hsp92II	CATG	3 cut(s)	20, 209, 227
Kzo9I	GATC	5 cut(s)	20, 153, 259, 276, 307
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	1 cut(s)	279
Lsp1109I	GCAGC	2 cut(s)	95, 256
LweI	GCATC	2 cut(s)	211, 239
MalI	GATC	5 cut(s)	22, 155, 261, 278, 309
MboI	GATC	5 cut(s)	20, 153, 259, 276, 307
MboII	GAAGA	4 cut(s)	40, 133, 254, 335
MflI	RGATCY	3 cut(s)	20, 259, 276
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	341, 361
MmeI	TCCRAC	3 cut(s)	134, 190, 321
MnlI	CCTC	2 cut(s)	220, 348
Mph1103I	ATGCAT	1 cut(s)	204
MseI	TTAA	1 cut(s)	50
MvnI	CGCG	1 cut(s)	257
NdeII	GATC	5 cut(s)	20, 153, 259, 276, 307
NlaIII	CATG	3 cut(s)	20, 209, 227
NsiI	ATGCAT	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	85, 271
Psp124BI	GAGCTC	1 cut(s)	336
PsuI	RGATCY	3 cut(s)	20, 259, 276
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	84, 270
Sau3AI	GATC	5 cut(s)	20, 153, 259, 276, 307
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	94, 175, 231, 336
SfaNI	GCATC	2 cut(s)	211, 239
SgeI	CNNG	9 cut(s)	17, 29, 80, 87, 218, 236, 257, 268, 278
Sse9I	AATT	2 cut(s)	341, 361
SsiI	CCGC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	336
TaaI	ACNGT	4 cut(s)	34, 115, 150, 302
TasI	AATT	2 cut(s)	341, 361
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseI	GCWGC	2 cut(s)	83, 269
TspDTI	ATGAA	2 cut(s)	41, 305
Zsp2I	ATGCAT	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.