Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

69061750 .. 69066918

Gene Structure 5169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00048950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCTTGTTTCTCTTGCTTGTTTAGCCGGAAGGCAGCTTCTTCAGTTAAACGGACTGTTGACATTGATGAAGGATCACATGGTCATGCAAAGAAGACTGCATTCCCTATTTGTGTACAGATTGCTTTAGATTCAGGAGTTTGCTTTTATTTAGTTGTTTCAGGTATTTCAAATCTCAAACTGTACAGTTACAAGGAACTGCAAAATGCCACTGAAAATTTCAGTGAAGTCAATAAGATTGGGCAGGGAGGCTTTGGCTCCGTATACAAGGGAACACTCAAGGATGGCTCTGTGGCAGCAATAAAGGTGTTGTCAGGAGATTCTAGGCAAGGGTCACGGGAATTTTTGACAGAAATTGAGGTGATTGCAAGTGTTGATCATGAGAACCTAGTTAAGCTATATGGTTGCTGTGCAGAAGGAAATCATAGGATATTGGTTTATGGCTATCTCGAGAATAATAGCCTATCACAAACTCTTCTTGATGGAGGCCAAAGTGGCATCCAACTTAGTTGGCAAGCAAGATGTAAAATCTGCATTGGTATTGCAAGGGGGCTTGCTTACCTCCATGAGGATGTTCAACCCCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTTCTTGATAAAGACCTTTCGCCCAAAATTTCAGATTTTGGTCTTGCAAAGTTGATCGCACCCAACTTGACCCATGTTAGTACTCGTGTCGCTGGAACAGCAGGTTACATAGCACCTGAATATGCCATACGAGGTCAAGTGACAAGGAAAGCAGATATCTATAGTTTTGGTGTTTTAGTTTTGGAAATTGTTAGTGGCAGGTGCAACACAAACAGACGTTTACCATCCAAAGAACAGTATCTTCTTGAAAGGGTATGGGAACTACATGAGAGGGGTCAGGTGGTGGAGTTGGTCGATACATCATTAAATGAAGATTTGAATGTTGAGGAGGCTTGCAAATTCATGAAGATCGGTCTTCTTTGCACCCAAGACAAGCCCAAGCTCCGACCATCCATGTCTACAGTTGTTAAGATGCTGACAGGTGAGATAGACGTGGATGACGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTAATGAATCAGAGAGATTCGGCTGATGTTAAACACTCATCTTACTCACTATCGCCTTCTGGGAAGGTTCTCAATTCTTCATCTTCCTCAGAACCAATCACCACTTCATTTGCTACGATGACCTTCAATTCTATATATGACCGAAGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

414

Amino Acids

45.46

Weight (kDa)

6.57

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	75 - 343	5.6e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	77 - 345	3.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	807
Acc36I	ACCTGC	2 cut(s)	710, 807
AccI	GTMKAC	2 cut(s)	264, 1016
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	4 cut(s)	217, 341, 645, 956
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	117, 185, 700
AfiI	CCNNNNNNNGG	1 cut(s)	568
AgsI	TTSAA	5 cut(s)	171, 578, 866, 937, 1219
AjiI	CACGTC	1 cut(s)	1051
AjnI	CCWGG	1 cut(s)	1075
AjuI	GAANNNNNNNTTGG	2 cut(s)	1180, 1212
AluBI	AGCT	3 cut(s)	38, 397, 1000
AluI	AGCT	3 cut(s)	38, 397, 1000
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	35, 296
ApoI	RAATTY	4 cut(s)	217, 341, 645, 956
Asp700I	GAANNNNTTC	1 cut(s)	1084
AsuHPI	GGTGA	3 cut(s)	373, 1052, 1183
AvaI	CYCGRG	1 cut(s)	449
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	2 cut(s)	101, 965
BbvI	GCAGC	2 cut(s)	47, 308
BccI	CCATC	4 cut(s)	278, 476, 850, 1015
BciT130I	CCWGG	1 cut(s)	1077
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	2 cut(s)	324, 389
BfmI	CTRYAG	2 cut(s)	778, 1017
BfuAI	ACCTGC	2 cut(s)	710, 807
BglI	GCCNNNNNGGC	1 cut(s)	495
BisI	GCNGC	2 cut(s)	36, 297
BlsI	GCNGC	2 cut(s)	37, 298
BmcAI	AGTACT	1 cut(s)	700
Bme1390I	CCNGG	1 cut(s)	1077
BmeT110I	CYCGRG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	1051
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	1077
BmsI	GCATC	2 cut(s)	507, 1020
BpiI	GAAGAC	2 cut(s)	101, 965
BpuEI	CTTGAG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	1077
BseGI	GGATG	6 cut(s)	289, 498, 577, 842, 1007, 1060
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	2 cut(s)	1080, 1194
BseRI	GAGGAG	1 cut(s)	959
BseXI	GCAGC	2 cut(s)	47, 308
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	1 cut(s)	591
BsmI	GAATGC	2 cut(s)	101, 1086
BsnI	GGCC	1 cut(s)	489
BsoBI	CYCGRG	1 cut(s)	449
Bsp1407I	TGTACA	2 cut(s)	115, 183
Bsp143I	GATC	4 cut(s)	74, 376, 672, 966
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	2 cut(s)	1081, 1193
BspHI	TCATGA	2 cut(s)	379, 960
BspLI	GGNNCC	1 cut(s)	259
BspMI	ACCTGC	2 cut(s)	710, 807
BspPI	GGATC	1 cut(s)	82
BsrGI	TGTACA	2 cut(s)	115, 183
BssMI	GATC	4 cut(s)	74, 376, 672, 966
BssNAI	GTATAC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	702
Bst1107I	GTATAC	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	1077
Bst4CI	ACNGT	5 cut(s)	58, 183, 188, 855, 1021
Bst6I	CTCTTC	1 cut(s)	480
BstAUI	TGTACA	2 cut(s)	115, 183
BstC8I	GCNNGC	4 cut(s)	516, 555, 610, 952
BstDEI	CTNAG	3 cut(s)	506, 1089, 1180
BstENI	CCTNNNNNAGG	1 cut(s)	566
BstF5I	GGATG	6 cut(s)	289, 498, 577, 842, 1007, 1060
BstKTI	GATC	4 cut(s)	77, 379, 675, 969
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	4 cut(s)	74, 376, 672, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 495, 716
BstNI	CCWGG	1 cut(s)	1077
BstSCI	CCNGG	1 cut(s)	1075
BstSFI	CTRYAG	2 cut(s)	778, 1017
BstV1I	GCAGC	2 cut(s)	47, 308
BstV2I	GAAGAC	2 cut(s)	101, 965
BstZ17I	GTATAC	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	489
BtrI	CACGTC	1 cut(s)	1051
BtsCI	GGATG	6 cut(s)	289, 498, 577, 842, 1007, 1060
BtsIMutI	CAGTG	2 cut(s)	210, 229
BveI	ACCTGC	2 cut(s)	710, 807
Cac8I	GCNNGC	4 cut(s)	516, 555, 610, 952
CciI	TCATGA	2 cut(s)	379, 960
Csp6I	GTAC	3 cut(s)	116, 184, 699
CspCI	CAANNNNNGTGG	2 cut(s)	1183, 1218
CviAII	CATG	8 cut(s)	80, 86, 380, 566, 692, 884, 961, 1012
CviQI	GTAC	3 cut(s)	116, 184, 699
DdeI	CTNAG	3 cut(s)	506, 1089, 1180
DpnI	GATC	4 cut(s)	76, 378, 674, 968
DpnII	GATC	4 cut(s)	74, 376, 672, 966
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco32I	GATATC	1 cut(s)	775
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	1075
EcoRV	GATATC	1 cut(s)	775
FaeI	CATG	8 cut(s)	83, 89, 383, 569, 695, 887, 964, 1015
FatI	CATG	8 cut(s)	79, 85, 379, 565, 691, 883, 960, 1011
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	2 cut(s)	264, 1016
Fnu4HI	GCNGC	2 cut(s)	36, 297
FokI	GGATG	6 cut(s)	296, 485, 584, 829, 994, 1067
Fsp4HI	GCNGC	2 cut(s)	36, 297
FspBI	CTAG	2 cut(s)	324, 389
GluI	GCNGC	2 cut(s)	36, 297
HaeIII	GGCC	1 cut(s)	489
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	8 cut(s)	83, 89, 383, 569, 695, 887, 964, 1015
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	4 cut(s)	131, 320, 1099, 1109
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	3 cut(s)	373, 1052, 1183
Hpy166II	GTNNAC	5 cut(s)	61, 116, 265, 839, 1017
Hpy188I	TCNGA	5 cut(s)	652, 1004, 1090, 1104, 1183
Hpy188III	TCNNGA	9 cut(s)	135, 315, 380, 449, 451, 479, 623, 863, 961
Hpy8I	GTNNAC	5 cut(s)	61, 116, 265, 839, 1017
HpyAV	CCTTC	6 cut(s)	25, 65, 410, 1150, 1158, 1225
HpyCH4III	ACNGT	5 cut(s)	58, 183, 188, 855, 1021
HpyCH4IV	ACGT	2 cut(s)	835, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 495, 716
HpyF3I	CTNAG	3 cut(s)	506, 1089, 1180
HpySE526I	ACGT	2 cut(s)	835, 1050
Hsp92II	CATG	8 cut(s)	83, 89, 383, 569, 695, 887, 964, 1015
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	74, 376, 672, 966
LmnI	GCTCC	2 cut(s)	263, 1005
Lsp1109I	GCAGC	2 cut(s)	47, 308
LweI	GCATC	2 cut(s)	507, 1020
MaeI	CTAG	2 cut(s)	324, 389
MaeII	ACGT	2 cut(s)	835, 1050
MaeIII	GTNAC	4 cut(s)	188, 333, 722, 757
MalI	GATC	4 cut(s)	76, 378, 674, 968
MboI	GATC	4 cut(s)	74, 376, 672, 966
MluCI	AATT	9 cut(s)	217, 341, 354, 645, 804, 956, 1165, 1219, 1240
MmeI	TCCRAC	2 cut(s)	526, 1027
MroXI	GAANNNNTTC	1 cut(s)	1084
MseI	TTAA	7 cut(s)	48, 393, 603, 923, 1026, 1094, 1122
MslI	CAYNNNNRTG	2 cut(s)	84, 570
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	1077
Mva1269I	GAATGC	2 cut(s)	101, 1086
MvaI	CCWGG	1 cut(s)	1077
MwoI	GCNNNNNNNGC	3 cut(s)	24, 495, 716
NdeII	GATC	4 cut(s)	74, 376, 672, 966
NlaIII	CATG	8 cut(s)	83, 89, 383, 569, 695, 887, 964, 1015
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	333, 757
PaeR7I	CTCGAG	1 cut(s)	449
PagI	TCATGA	2 cut(s)	379, 960
PaqCI	CACCTGC	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	1 cut(s)	1056
PctI	GAATGC	2 cut(s)	101, 1086
PdmI	GAANNNNTTC	1 cut(s)	1084
PfeI	GAWTC	4 cut(s)	131, 320, 1099, 1109
PkrI	GCNGC	2 cut(s)	37, 298
Psp6I	CCWGG	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1075
PspN4I	GGNNCC	1 cut(s)	259
RsaI	GTAC	3 cut(s)	117, 185, 700
RsaNI	GTAC	3 cut(s)	116, 184, 699
RseI	CAYNNNNRTG	2 cut(s)	84, 570
SaqAI	TTAA	7 cut(s)	48, 393, 603, 923, 1026, 1094, 1122
SatI	GCNGC	2 cut(s)	36, 297
Sau3AI	GATC	4 cut(s)	74, 376, 672, 966
ScaI	AGTACT	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	1077
SfaNI	GCATC	2 cut(s)	507, 1020
SfcI	CTRYAG	2 cut(s)	778, 1017
Sfr274I	CTCGAG	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	449
SmiMI	CAYNNNNRTG	2 cut(s)	84, 570
SmlI	CTYRAG	2 cut(s)	278, 449
SmoI	CTYRAG	2 cut(s)	278, 449
Sse9I	AATT	9 cut(s)	217, 341, 354, 645, 804, 956, 1165, 1219, 1240
SspI	AATATT	1 cut(s)	616
SspMI	CTAG	2 cut(s)	324, 389
StyD4I	CCNGG	1 cut(s)	1075
TaaI	ACNGT	5 cut(s)	58, 183, 188, 855, 1021
TaiI	ACGT	2 cut(s)	838, 1053
TaqI	TCGA	2 cut(s)	450, 912
TaqII	GACCGA	1 cut(s)	959
TasI	AATT	9 cut(s)	217, 341, 354, 645, 804, 956, 1165, 1219, 1240
TatI	WGTACW	3 cut(s)	115, 183, 698
TfiI	GAWTC	4 cut(s)	131, 320, 1099, 1109
Tru1I	TTAA	7 cut(s)	48, 393, 603, 923, 1026, 1094, 1122
Tru9I	TTAA	7 cut(s)	48, 393, 603, 923, 1026, 1094, 1122
TscAI	CASTG	2 cut(s)	217, 229
TseFI	GTSAC	2 cut(s)	333, 757
TseI	GCWGC	2 cut(s)	35, 296
Tsp45I	GTSAC	2 cut(s)	333, 757
TspDTI	ATGAA	7 cut(s)	84, 942, 949, 977, 1112, 1161, 1188
TspGWI	ACGGA	2 cut(s)	67, 250
TspRI	CASTG	2 cut(s)	217, 229
XagI	CCTNNNNNAGG	1 cut(s)	566
XapI	RAATTY	4 cut(s)	217, 341, 645, 956
XhoI	CTCGAG	1 cut(s)	449
XmiI	GTMKAC	2 cut(s)	264, 1016
XmnI	GAANNNNTTC	1 cut(s)	1084
XspI	CTAG	2 cut(s)	324, 389
ZrmI	AGTACT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.