Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

20639966 .. 20644674

Gene Structure 4709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG188000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGATATCTCAAGTCCCAAAGTTGCCTTGTGTCTACCCCTATAAGAATCTGAACAAGTTTTCTCTGTCAACAGAACTTTCTGGCATTCATGATGTTAAACTATACACGTATAGAGAGTTGAAGTTGGTGACTGAAGATTTTGATATAGCGAATAAAATCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGACGACTTAAAGATGGAAATCTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAAGGAGTTTTTGACTGAGATAGATGTGATCTCAAAAATAGAGCATGAAAATCTAGTTAAGCTCTATGGCTGTTGTATAGAAGGGGACCAGAGAATTTTGGTCTACAACTACCTCGAGAATAATAGTCTTGCACAAACTCTTCTTGGTGGAGGTTTCAGTAATATCCAGTTTAATTGGCGAACACGGCGTGGAATATGTATCGGAATTGCATGTGGGCTTGCGTTCCTTCATGAGGATGTACGTCCACATATTATTCACAGGGATATCAAAGCCAGCAATATTCTCCTTGATAAAGACCTAATGCCTAAAATTTCAGATTTTGGCCTTGCAAAACTTATCCCGGCCAACGTGACTCATGTTAGCACACGAGTGGCAGGAACAATAGGTTATCTGGCGCCAGAATACGCAATACGAGGGCAATTGACGAGGAAAGCAGATGTTTATAGTTTTGGGGTACTCCTTGTGGAAATAGTCAGTGGCAGATGCAATACTAATACACTACTACCCATTGAGGAACAGTATCTGCTTGAAAGGACATGGAATCTCTATGAACGCAGGGAGCTGGTTGGTCTGGTAGACACAGCATTGAACGGGGATTTTGATGCTGAGGAGGCTTGTAGATTCTTAAAGATTGGTCTTCTCTGCACACAAGACACTCCGAAGCTCAGACCGTCCATGTCAACTGTGGTGAAGATGCTAAAAGGTCAGAAGGAAATCGACGATACTAAGATAACAAAGCCAGGCTTGATATCTGATTTCATGGATCTCAAAATACGAAGCCAACCGAATAGTAAGAAGCCTAGCGAAAAGACCACTGCTTCGTCCTACAATGAGTCCTCTGGTTCAGACAACCCGGACAATTCAAACCTGTCATCAGAAACCTCAGCTGCTGCTACTTCCACTTTCATCACAAACTTATCGTTTGAAACCATGCCTCCGGGTACTACAACCTTCAGCTTCAAAACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

45.33

Weight (kDa)

7.0

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	49 - 317	1.1e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	49 - 250	1.8e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	3 cut(s)	33, 357, 831
AclWI	GGATC	1 cut(s)	1026
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	2 cut(s)	348, 564
AcuI	CTGAAG	2 cut(s)	153, 1192
AcyI	GRCGYC	1 cut(s)	650
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	3 cut(s)	495, 711, 1198
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	6 cut(s)	121, 785, 844, 1119, 1181, 1216
AjnI	CCWGG	1 cut(s)	994
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	623
AluBI	AGCT	6 cut(s)	236, 316, 817, 919, 1142, 1212
AluI	AGCT	6 cut(s)	236, 316, 817, 919, 1142, 1212
AlwI	GGATC	1 cut(s)	1026
AlwNI	CAGNNNCTG	2 cut(s)	778, 1145
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	577, 597
ApeKI	GCWGC	3 cut(s)	215, 1142, 1145
ApoI	RAATTY	2 cut(s)	348, 564
ArsI	GACNNNNNNTTYG	2 cut(s)	1057, 1089
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	1 cut(s)	340
AsuC2I	CCSGG	3 cut(s)	596, 1109, 1194
AsuHPI	GGTGA	3 cut(s)	139, 265, 955
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	649
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	884
BbvCI	CCTCAGC	2 cut(s)	861, 1138
BbvI	GCAGC	3 cut(s)	202, 1129, 1132
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	455
BciT130I	CCWGG	1 cut(s)	996
BcnI	CCSGG	3 cut(s)	596, 1109, 1194
BfaI	CTAG	2 cut(s)	308, 1056
BfoI	RGCGCY	1 cut(s)	653
BisI	GCNGC	3 cut(s)	216, 1143, 1146
BlsI	GCNGC	3 cut(s)	217, 1144, 1147
Bme1390I	CCNGG	4 cut(s)	596, 996, 1109, 1194
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	341, 651
BmrFI	CCNGG	4 cut(s)	596, 996, 1109, 1194
BmsI	GCATC	3 cut(s)	728, 847, 939
BpiI	GAAGAC	1 cut(s)	884
Bpu10I	CCTNAGC	2 cut(s)	861, 1138
BpuMI	CCSGG	3 cut(s)	596, 1109, 1194
BsaAI	YACGTR	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	650
BsaXI	ACNNNNNCTCC	2 cut(s)	1174, 1204
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	996
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	4 cut(s)	261, 852, 934, 1152
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	3 cut(s)	202, 1129, 1132
BsgI	GTGCAG	1 cut(s)	883
BshFI	GGCC	2 cut(s)	579, 599
BshNI	GGYRCC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	3 cut(s)	596, 1109, 1193
BslFI	GGGAC	2 cut(s)	204, 353
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmFI	GGGAC	2 cut(s)	204, 353
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	579, 599
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	282, 1018
BspANI	GGCC	2 cut(s)	579, 599
BspCNI	CTCAG	4 cut(s)	262, 853, 933, 1151
BspHI	TCATGA	2 cut(s)	88, 484
BspLI	GGNNCC	2 cut(s)	341, 651
BspPI	GGATC	1 cut(s)	1026
BspT107I	GGYRCC	1 cut(s)	649
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	2 cut(s)	282, 1018
BssNI	GRCGYC	1 cut(s)	650
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	3 cut(s)	774, 927, 940
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	474, 529
BstDEI	CTNAG	5 cut(s)	270, 861, 920, 981, 1138
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	2 cut(s)	285, 1021
BstMBI	GATC	2 cut(s)	282, 1018
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 866
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	4 cut(s)	594, 994, 1107, 1192
BstV1I	GCAGC	3 cut(s)	202, 1129, 1132
BstV2I	GAAGAC	1 cut(s)	884
BstX2I	RGATCY	1 cut(s)	1018
BstYI	RGATCY	1 cut(s)	1018
BsuRI	GGCC	2 cut(s)	579, 599
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	2 cut(s)	736, 1068
Cac8I	GCNNGC	2 cut(s)	474, 529
CaiI	CAGNNNCTG	2 cut(s)	778, 1145
CciI	TCATGA	2 cut(s)	88, 484
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	3 cut(s)	494, 710, 1197
CviAII	CATG	9 cut(s)	89, 299, 465, 485, 611, 792, 931, 1015, 1186
CviQI	GTAC	3 cut(s)	494, 710, 1197
DdeI	CTNAG	5 cut(s)	270, 861, 920, 981, 1138
DinI	GGCGCC	1 cut(s)	651
DpnI	GATC	2 cut(s)	284, 1020
DpnII	GATC	2 cut(s)	282, 1018
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco32I	GATATC	3 cut(s)	6, 520, 1005
Eco47I	GGWCC	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	153, 1192
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	994
EcoRV	GATATC	3 cut(s)	6, 520, 1005
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
FaeI	CATG	9 cut(s)	92, 302, 468, 488, 614, 795, 934, 1018, 1189
FalI	AAGNNNNNCTT	2 cut(s)	983, 1015
FaqI	GGGAC	2 cut(s)	204, 353
FatI	CATG	9 cut(s)	88, 298, 464, 484, 610, 791, 930, 1014, 1185
FauNDI	CATATG	1 cut(s)	1223
FblI	GTMKAC	3 cut(s)	33, 357, 831
Fnu4HI	GCNGC	3 cut(s)	216, 1143, 1146
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	216, 1143, 1146
FspBI	CTAG	2 cut(s)	308, 1056
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	3 cut(s)	216, 1143, 1146
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	2 cut(s)	579, 599
HapII	CCGG	3 cut(s)	596, 1109, 1193
HhaI	GCGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	9 cut(s)	92, 302, 468, 488, 614, 795, 934, 1018, 1189
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	2 cut(s)	69, 936
HindII	GTYRAC	2 cut(s)	69, 936
HinfI	GANTC	6 cut(s)	46, 239, 607, 796, 876, 1088
HpaII	CCGG	3 cut(s)	596, 1109, 1193
HphI	GGTGA	3 cut(s)	139, 265, 955
Hpy166II	GTNNAC	6 cut(s)	34, 69, 358, 500, 832, 936
Hpy188I	TCNGA	9 cut(s)	51, 458, 571, 915, 923, 963, 1009, 1102, 1132
Hpy188III	TCNNGA	4 cut(s)	89, 243, 370, 485
Hpy8I	GTNNAC	6 cut(s)	34, 69, 358, 500, 832, 936
Hpy99I	CGWCG	1 cut(s)	977
HpyAV	CCTTC	6 cut(s)	158, 250, 329, 491, 958, 1216
HpyCH4III	ACNGT	3 cut(s)	774, 927, 940
HpyCH4IV	ACGT	3 cut(s)	107, 496, 603
HpyCH4V	TGCA	5 cut(s)	386, 464, 584, 741, 900
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 866
HpyF3I	CTNAG	5 cut(s)	270, 861, 920, 981, 1138
HpySE526I	ACGT	3 cut(s)	107, 496, 603
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	9 cut(s)	92, 302, 468, 488, 614, 795, 934, 1018, 1189
HspAI	GCGC	1 cut(s)	650
KasI	GGCGCC	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	282, 1018
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	3 cut(s)	202, 1129, 1132
LweI	GCATC	3 cut(s)	728, 847, 939
MaeI	CTAG	2 cut(s)	308, 1056
MaeII	ACGT	3 cut(s)	107, 496, 603
MaeIII	GTNAC	2 cut(s)	127, 604
MalI	GATC	2 cut(s)	284, 1020
MboI	GATC	2 cut(s)	282, 1018
MboII	GAAGA	4 cut(s)	146, 386, 884, 958
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	1 cut(s)	1018
MluCI	AATT	6 cut(s)	348, 427, 459, 564, 674, 1114
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	601, 1097
MseI	TTAA	5 cut(s)	96, 198, 312, 426, 881
MslI	CAYNNNNRTG	2 cut(s)	489, 623
MspA1I	CMGCKG	2 cut(s)	236, 1142
MspI	CCGG	3 cut(s)	596, 1109, 1193
MspR9I	CCNGG	4 cut(s)	596, 996, 1109, 1194
MunI	CAATTG	1 cut(s)	674
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	996
MwoI	GCNNNNNNNGC	2 cut(s)	439, 866
NarI	GGCGCC	1 cut(s)	650
NciI	CCSGG	3 cut(s)	596, 1109, 1194
NdeI	CATATG	1 cut(s)	1223
NdeII	GATC	2 cut(s)	282, 1018
NlaIII	CATG	9 cut(s)	92, 302, 468, 488, 614, 795, 934, 1018, 1189
NlaIV	GGNNCC	2 cut(s)	341, 651
NmuCI	GTSAC	2 cut(s)	127, 604
NspI	RCATGY	1 cut(s)	468
OliI	CACNNNNGTG	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	2 cut(s)	88, 484
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	46, 239, 796, 876
PkrI	GCNGC	3 cut(s)	217, 1144, 1147
PleI	GAGTC	2 cut(s)	601, 1096
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	2 cut(s)	601, 1096
Ppu21I	YACGTR	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	2 cut(s)	341, 651
PspPI	GGNCC	1 cut(s)	340
PstNI	CAGNNNCTG	2 cut(s)	778, 1145
PsuI	RGATCY	1 cut(s)	1018
PvuII	CAGCTG	2 cut(s)	236, 1142
RsaI	GTAC	3 cut(s)	495, 711, 1198
RsaNI	GTAC	3 cut(s)	494, 710, 1197
RseI	CAYNNNNRTG	2 cut(s)	489, 623
SaqAI	TTAA	5 cut(s)	96, 198, 312, 426, 881
SatI	GCNGC	3 cut(s)	216, 1143, 1146
Sau3AI	GATC	2 cut(s)	282, 1018
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	2 cut(s)	601, 1097
ScrFI	CCNGG	4 cut(s)	596, 996, 1109, 1194
SfaNI	GCATC	3 cut(s)	728, 847, 939
SfoI	GGCGCC	1 cut(s)	651
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	2 cut(s)	489, 623
SmlI	CTYRAG	2 cut(s)	9, 368
SmoI	CTYRAG	2 cut(s)	9, 368
Sse9I	AATT	6 cut(s)	348, 427, 459, 564, 674, 1114
SspDI	GGCGCC	1 cut(s)	649
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	308, 1056
StyD4I	CCNGG	4 cut(s)	594, 994, 1107, 1192
TaaI	ACNGT	3 cut(s)	774, 927, 940
TaiI	ACGT	3 cut(s)	110, 499, 606
TaqI	TCGA	2 cut(s)	369, 972
TasI	AATT	6 cut(s)	348, 427, 459, 564, 674, 1114
TfiI	GAWTC	4 cut(s)	46, 239, 796, 876
Tru1I	TTAA	5 cut(s)	96, 198, 312, 426, 881
Tru9I	TTAA	5 cut(s)	96, 198, 312, 426, 881
TscAI	CASTG	2 cut(s)	736, 1075
TseFI	GTSAC	2 cut(s)	127, 604
TseI	GCWGC	3 cut(s)	215, 1142, 1145
Tsp45I	GTSAC	2 cut(s)	127, 604
TspDTI	ATGAA	6 cut(s)	77, 315, 473, 819, 1003, 1150
TspRI	CASTG	2 cut(s)	736, 1075
VpaK11BI	GGWCC	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	2 cut(s)	348, 564
XceI	RCATGY	1 cut(s)	468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	3 cut(s)	33, 357, 831
XspI	CTAG	2 cut(s)	308, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.