Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

11895711 .. 11899179

Gene Structure 3469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATTATGTCTTGTTTTGTTTACTTTGTATTACATGCCATTAAATTGCGCTGTGTTACTATGTCCATAACTTCAACTGTCAAGCTTTTCAACAAAAGGAAAATAATGTTCTATTTGAGGTTTGCATTGCATTTCTATCCTACCGTAAAGGCTTCTAAATGTGATTGTATGGGTGCAGTTGTTTCAGGTATTTCGAATCTCAAACTGTACACTTACAAGGAACTGCGGAATGCCACTGAAAATTTCAGTGGCGAAAATAAAATTGGGCAGGGAGGCTTTGGCTCCGTATACAAGGGAACACTCAAGGATGGCTCTGTGGCAGCAATAAAGGTATTGTCAGGAGATTCTAGGCAAGGGTCGCGAGAATTTTTAACAGAAATTGAGGTGATTGCAAGTGTTAATCATGAGAACCTAGTTAAGCTATATGGTTGCTGTGCTGAAGGAAATCACAGGATATTAGTTTATGGCTATCTCGAGAATAATAGCCTTTCACAAACTCTTCTTGGTAGAGGCCAAAGTGGCATCCAATTTAGTTGGCAAACAAGGTGTAAAATCTGCATTGGTATTGCAAGGGGGCTCGCTTACCTCCATGAGGATGTTCAACCCCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTCCTTGATGAAGACCTCTCGCCCAAAATTTCAGATTTTGGTCTTGCAAAGTTCATCGCTCCCAACTTGACCCATGTTAGTACCCGTGTCGCTGGAACAGCAGGTTACTTAGCACCTGAATATGCCATACGAGGTCAAGTGACAAGGAAAGCAGATATATATAGTTTTGGTGTTTTAGTCTTGGAAATTGTTAGCGGCAGGTGCAACACAAACAGACGTTTACCGCCCAAAGAACAGTATCTCCTTGAAAGGGTATGGGAACTGCATGAGAGAGGTCAGCTGGCGGAGTTGATCGATACTTTTTTAAATGAAGATTTAAATGTTGAAGAGGCTTGCAGATTCATGAAGATTGGTCTTCTTTGCACCCAAGACAAGCCTAAGCTCCGACCATCCATGTCTATGGTTGTTAAGATGCTGACAGGTGAGATAGACGTGGATGAGGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTCATGGATCAGAGAGATTCAGCTGAAGTTAAACACTCATCTTACTCATTATCACCTTCTGGAAGGGTTCTCCAATCGTCATCTTCCTCAGAACAAGTCACTACTTCATTTGCTACCATGACCTTCAATTCTATATATGACCGAACCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

423

Amino Acids

47.26

Weight (kDa)

8.52

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 350	2.6e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	85 - 352	4.7e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	831
Acc36I	ACCTGC	2 cut(s)	734, 831
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	361
AciI	CCGC	4 cut(s)	226, 837, 866, 926
AclWI	GGATC	1 cut(s)	1131
AcsI	RAATTY	3 cut(s)	241, 365, 669
AcuI	CTGAAG	2 cut(s)	459, 1161
AfaI	GTAC	2 cut(s)	209, 724
AfiI	CCNNNNNNNGG	2 cut(s)	592, 892
AgsI	TTSAA	6 cut(s)	75, 91, 602, 890, 968, 1243
AjiI	CACGTC	1 cut(s)	1075
AjnI	CCWGG	1 cut(s)	1099
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AloI	GAACNNNNNNTCC	2 cut(s)	867, 899
AluBI	AGCT	5 cut(s)	85, 421, 922, 1024, 1139
AluI	AGCT	5 cut(s)	85, 421, 922, 1024, 1139
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	1 cut(s)	1131
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	3 cut(s)	241, 365, 669
Asp700I	GAANNNNTTC	1 cut(s)	1108
AspLEI	GCGC	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	397, 1076, 1161
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	579
BbsI	GAAGAC	2 cut(s)	660, 989
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	2 cut(s)	302, 1039
BciT130I	CCWGG	1 cut(s)	1101
BcoDI	GTCTC	1 cut(s)	615
BfaI	CTAG	2 cut(s)	348, 413
BfuAI	ACCTGC	2 cut(s)	734, 831
BglI	GCCNNNNNGGC	1 cut(s)	519
BisI	GCNGC	2 cut(s)	321, 838
BlsI	GCNGC	2 cut(s)	322, 839
Bme1390I	CCNGG	1 cut(s)	1101
BmeT110I	CYCGRG	1 cut(s)	473
BmgBI	CACGTC	1 cut(s)	1075
BmiI	GGNNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	1101
BmsI	GCATC	2 cut(s)	531, 1044
BpiI	GAAGAC	2 cut(s)	660, 989
Bpu10I	CCTNAGC	1 cut(s)	1020
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	936
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	592, 892
Bse3DI	GCAATG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	1101
BseCI	ATCGAT	1 cut(s)	936
BseGI	GGATG	5 cut(s)	313, 522, 601, 1031, 1084
BseLI	CCNNNNNNNGG	2 cut(s)	592, 892
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	1104, 1218
BseRI	GAGGAG	1 cut(s)	1097
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	592, 892
BsmAI	GTCTC	1 cut(s)	615
BsmI	GAATGC	2 cut(s)	235, 1110
BsnI	GGCC	1 cut(s)	513
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp1407I	TGTACA	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	933, 1123
Bsp68I	TCGCGA	1 cut(s)	361
BspACI	CCGC	4 cut(s)	226, 837, 866, 926
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	2 cut(s)	1105, 1217
BspDI	ATCGAT	1 cut(s)	936
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	2 cut(s)	403, 984
BspLI	GGNNCC	1 cut(s)	283
BspMI	ACCTGC	2 cut(s)	734, 831
BspPI	GGATC	1 cut(s)	1131
BspT104I	TTCGAA	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	207
BssMI	GATC	2 cut(s)	933, 1123
BssNAI	GTATAC	1 cut(s)	289
Bst1107I	GTATAC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	1101
Bst4CI	ACNGT	4 cut(s)	79, 145, 207, 879
Bst6I	CTCTTC	2 cut(s)	504, 963
BstAUI	TGTACA	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	4 cut(s)	579, 634, 924, 976
BstDEI	CTNAG	4 cut(s)	751, 1020, 1113, 1204
BstENI	CCTNNNNNAGG	1 cut(s)	590
BstF5I	GGATG	5 cut(s)	313, 522, 601, 1031, 1084
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	2 cut(s)	936, 1126
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	2 cut(s)	933, 1123
BstMWI	GCNNNNNNNGC	4 cut(s)	358, 519, 740, 843
BstNI	CCWGG	1 cut(s)	1101
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	1099
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	2 cut(s)	660, 989
BstXI	CCANNNNNNTGG	1 cut(s)	1042
BstZ17I	GTATAC	1 cut(s)	289
Bsu15I	ATCGAT	1 cut(s)	936
BsuRI	GGCC	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	936
BtgZI	GCGATG	1 cut(s)	682
BtrI	CACGTC	1 cut(s)	1075
BtsCI	GGATG	5 cut(s)	313, 522, 601, 1031, 1084
BtsIMutI	CAGTG	2 cut(s)	234, 253
BtuMI	TCGCGA	1 cut(s)	361
BveI	ACCTGC	2 cut(s)	734, 831
Cac8I	GCNNGC	4 cut(s)	579, 634, 924, 976
CciI	TCATGA	2 cut(s)	403, 984
CfoI	GCGC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	936
Csp6I	GTAC	2 cut(s)	208, 723
CviAII	CATG	9 cut(s)	35, 404, 590, 716, 908, 985, 1036, 1120, 1234
CviQI	GTAC	2 cut(s)	208, 723
DdeI	CTNAG	4 cut(s)	751, 1020, 1113, 1204
DpnI	GATC	2 cut(s)	935, 1125
DpnII	GATC	2 cut(s)	933, 1123
DraI	TTTAAA	2 cut(s)	948, 960
Eam1104I	CTCTTC	2 cut(s)	504, 963
EarI	CTCTTC	2 cut(s)	504, 963
EciI	GGCGGA	1 cut(s)	941
Eco24I	GRGCYC	1 cut(s)	579
Eco57I	CTGAAG	2 cut(s)	459, 1161
Eco88I	CYCGRG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	1099
EcoT38I	GRGCYC	1 cut(s)	579
FaeI	CATG	9 cut(s)	38, 407, 593, 719, 911, 988, 1039, 1123, 1237
FatI	CATG	9 cut(s)	34, 403, 589, 715, 907, 984, 1035, 1119, 1233
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	321, 838
FokI	GGATG	5 cut(s)	320, 509, 608, 1018, 1091
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	2 cut(s)	321, 838
FspBI	CTAG	2 cut(s)	348, 413
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	321, 838
HaeIII	GGCC	1 cut(s)	513
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	9 cut(s)	38, 407, 593, 719, 911, 988, 1039, 1123, 1237
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	4 cut(s)	196, 344, 981, 1133
HphI	GGTGA	3 cut(s)	397, 1076, 1161
Hpy166II	GTNNAC	4 cut(s)	22, 210, 289, 863
Hpy188I	TCNGA	5 cut(s)	676, 1028, 1114, 1128, 1207
Hpy188III	TCNNGA	7 cut(s)	339, 360, 404, 473, 475, 985, 1176
Hpy8I	GTNNAC	4 cut(s)	22, 210, 289, 863
HpyAV	CCTTC	4 cut(s)	434, 1173, 1182, 1249
HpyCH4III	ACNGT	4 cut(s)	79, 145, 207, 879
HpyCH4IV	ACGT	2 cut(s)	859, 1074
HpyF10VI	GCNNNNNNNGC	4 cut(s)	358, 519, 740, 843
HpyF3I	CTNAG	4 cut(s)	751, 1020, 1113, 1204
HpySE526I	ACGT	2 cut(s)	859, 1074
Hsp92II	CATG	9 cut(s)	38, 407, 593, 719, 911, 988, 1039, 1123, 1237
HspAI	GCGC	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	933, 1123
LmnI	GCTCC	3 cut(s)	287, 706, 1029
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	2 cut(s)	531, 1044
MaeI	CTAG	2 cut(s)	348, 413
MaeII	ACGT	2 cut(s)	859, 1074
MaeIII	GTNAC	4 cut(s)	55, 746, 781, 1213
MalI	GATC	2 cut(s)	935, 1125
MboI	GATC	2 cut(s)	933, 1123
MboII	GAAGA	8 cut(s)	491, 665, 965, 980, 989, 1000, 1099, 1191
MhlI	GDGCHC	1 cut(s)	579
MmeI	TCCRAC	1 cut(s)	1051
MroXI	GAANNNNTTC	1 cut(s)	1108
MseI	TTAA	9 cut(s)	42, 371, 399, 417, 627, 947, 959, 1050, 1146
MslI	CAYNNNNRTG	2 cut(s)	594, 1040
MspA1I	CMGCKG	2 cut(s)	922, 1139
MspR9I	CCNGG	1 cut(s)	1101
Mva1269I	GAATGC	2 cut(s)	235, 1110
MvaI	CCWGG	1 cut(s)	1101
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	4 cut(s)	358, 519, 740, 843
NdeII	GATC	2 cut(s)	933, 1123
NlaIII	CATG	9 cut(s)	38, 407, 593, 719, 911, 988, 1039, 1123, 1237
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	781, 1213
NruI	TCGCGA	1 cut(s)	361
NspI	RCATGY	1 cut(s)	38
NspV	TTCGAA	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	473
PagI	TCATGA	2 cut(s)	403, 984
PaqCI	CACCTGC	1 cut(s)	831
PctI	GAATGC	2 cut(s)	235, 1110
PdmI	GAANNNNTTC	1 cut(s)	1108
PfeI	GAWTC	4 cut(s)	196, 344, 981, 1133
PkrI	GCNGC	2 cut(s)	322, 839
Psp6I	CCWGG	1 cut(s)	1099
PspGI	CCWGG	1 cut(s)	1099
PspN4I	GGNNCC	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	922, 1139
RruI	TCGCGA	1 cut(s)	361
RsaI	GTAC	2 cut(s)	209, 724
RsaNI	GTAC	2 cut(s)	208, 723
RseI	CAYNNNNRTG	2 cut(s)	594, 1040
SaqAI	TTAA	9 cut(s)	42, 371, 399, 417, 627, 947, 959, 1050, 1146
SatI	GCNGC	2 cut(s)	321, 838
Sau3AI	GATC	2 cut(s)	933, 1123
ScrFI	CCNGG	1 cut(s)	1101
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	2 cut(s)	531, 1044
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	473
SmiI	ATTTAAAT	1 cut(s)	960
SmiMI	CAYNNNNRTG	2 cut(s)	594, 1040
SmlI	CTYRAG	2 cut(s)	302, 473
SmoI	CTYRAG	2 cut(s)	302, 473
SsiI	CCGC	4 cut(s)	226, 837, 866, 926
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	2 cut(s)	348, 413
StyD4I	CCNGG	1 cut(s)	1099
SwaI	ATTTAAAT	1 cut(s)	960
TaaI	ACNGT	4 cut(s)	79, 145, 207, 879
TaiI	ACGT	2 cut(s)	862, 1077
TaqI	TCGA	3 cut(s)	194, 474, 936
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	1 cut(s)	840
TfiI	GAWTC	4 cut(s)	196, 344, 981, 1133
Tru1I	TTAA	9 cut(s)	42, 371, 399, 417, 627, 947, 959, 1050, 1146
Tru9I	TTAA	9 cut(s)	42, 371, 399, 417, 627, 947, 959, 1050, 1146
TscAI	CASTG	2 cut(s)	241, 253
TseFI	GTSAC	2 cut(s)	781, 1213
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	781, 1213
TspDTI	ATGAA	7 cut(s)	666, 685, 966, 973, 1001, 1108, 1212
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	2 cut(s)	241, 253
XagI	CCTNNNNNAGG	1 cut(s)	590
XapI	RAATTY	3 cut(s)	241, 365, 669
XceI	RCATGY	1 cut(s)	38
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	1108
XspI	CTAG	2 cut(s)	348, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.