Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

20240997 .. 20242599

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGCCAAAAATTTCAGATTTTGGTCTTGCAAAACTCATCCCTCCTAACATGACCCATGTTAGCACGCGTGTGGCAGGAACAATAGGTTATTTGGCACCTGAGTATGCAATACGAGGGCAATTGACAAGGAAAGCTGATATTTATAGCTTCGGAGTTCTCCTTGTGGAAATAGTCAGTGGCAGAAGTAATACGAATACCCAACTACCTATTGACGAACAGTATTTGCTTGAAAGGACATGGCAACTCTACGAACGGAAGGAGCTTGTTGGACTGGTTGACACATCACTCGACGGTGATTTTGATGCTGAGGAAGCTTGTAGGTTTCTAAAGATCGGCCTCCTCTGCACCCAAGACCTTGCGAAGCTCAGGCCATCCATGTCAACCGTGGTCAAGATGCTAAAAGGCAAGAAGGTTGTCAACGATGATAAGATAACAAAGCCAGGCTTGATAACCGATTTCATGGACCTGAAAGTACGAGAGCCTCGTGATACGAAGCCTAGCGCACAGACTACTACAGCTTTCAACAATGCGTCCTCGGGCTTTGGCTCAGACAACAAGGACAATTCAACATTCTCCTTAGCAACCTCAGCTGCTGCTACTACCACCTTCATTTCGAACTTGTCATCGGAAACCTCAGCCGCTAATACAACGAACTTCAGCTTCCGCACCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

225

Amino Acids

24.55

Weight (kDa)

7.7

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccII	CGCG	1 cut(s)	67
AciI	CCGC	2 cut(s)	639, 664
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	640
AfaI	GTAC	1 cut(s)	474
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	230, 523, 567
AjnI	CCWGG	1 cut(s)	439
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	8 cut(s)	134, 147, 262, 314, 364, 518, 590, 660
AluI	AGCT	8 cut(s)	134, 147, 262, 314, 364, 518, 590, 660
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	535
AoxI	GGCC	2 cut(s)	334, 368
ApeKI	GCWGC	2 cut(s)	590, 593
ApoI	RAATTY	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	503
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	614
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	483
BbvCI	CCTCAGC	3 cut(s)	306, 586, 634
BbvI	GCAGC	2 cut(s)	577, 580
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	441
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	3 cut(s)	591, 594, 639
BlsI	GCNGC	3 cut(s)	592, 595, 640
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	463
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	292, 384
Bpu10I	CCTNAGC	5 cut(s)	306, 365, 577, 586, 634
Bpu14I	TTCGAA	1 cut(s)	614
BsaJI	CCNNGG	2 cut(s)	384, 534
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	384, 534
BseGI	GGATG	2 cut(s)	36, 371
BseMII	CTCAG	6 cut(s)	90, 297, 379, 561, 600, 648
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	577, 580
BsgI	GTGCAG	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	336, 370
BshNI	GGYRCC	1 cut(s)	94
BsiHKCI	CYCGRG	1 cut(s)	535
BsnI	GGCC	2 cut(s)	336, 370
BsoBI	CYCGRG	1 cut(s)	535
Bsp119I	TTCGAA	1 cut(s)	614
Bsp143I	GATC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	639, 664
BspANI	GGCC	2 cut(s)	336, 370
BspCNI	CTCAG	6 cut(s)	91, 298, 378, 560, 599, 647
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	96
BspT104I	TTCGAA	1 cut(s)	614
BspT107I	GGYRCC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	384, 534
BssMI	GATC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	4 cut(s)	219, 293, 385, 670
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	7 cut(s)	99, 306, 365, 547, 577, 586, 634
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	36, 371
BstFNI	CGCG	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 342, 587
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	577, 580
BsuRI	GGCC	2 cut(s)	336, 370
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	36, 371
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	65
CaiI	CAGNNNCTG	1 cut(s)	593
CfoI	GCGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	5 cut(s)	49, 56, 237, 376, 460
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	7 cut(s)	99, 306, 365, 547, 577, 586, 634
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	640
Eco88I	CYCGRG	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	439
FaeI	CATG	5 cut(s)	52, 59, 240, 379, 463
FaiI	YATR	8 cut(s)	50, 57, 105, 144, 238, 377, 461, 673
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	5 cut(s)	48, 55, 236, 375, 459
Fnu4HI	GCNGC	3 cut(s)	591, 594, 639
FokI	GGATG	2 cut(s)	23, 358
Fsp4HI	GCNGC	3 cut(s)	591, 594, 639
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	3 cut(s)	591, 594, 639
HaeIII	GGCC	2 cut(s)	336, 370
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	5 cut(s)	52, 59, 240, 379, 463
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HincII	GTYRAC	3 cut(s)	277, 381, 418
HindII	GTYRAC	3 cut(s)	277, 381, 418
HindIII	AAGCTT	1 cut(s)	312
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	3 cut(s)	277, 381, 418
Hpy188I	TCNGA	4 cut(s)	16, 152, 550, 628
Hpy188III	TCNNGA	2 cut(s)	391, 485
Hpy8I	GTNNAC	3 cut(s)	277, 381, 418
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	250, 403, 616
HpyCH4III	ACNGT	4 cut(s)	219, 293, 385, 670
HpyCH4V	TGCA	3 cut(s)	29, 107, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 342, 587
HpyF3I	CTNAG	7 cut(s)	99, 306, 365, 547, 577, 586, 634
Hsp92II	CATG	5 cut(s)	52, 59, 240, 379, 463
HspAI	GCGC	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	7 cut(s)	60, 111, 257, 352, 426, 453, 479
Lsp1109I	GCAGC	2 cut(s)	577, 580
LweI	GCATC	2 cut(s)	292, 384
MaeI	CTAG	1 cut(s)	498
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MfeI	CAATTG	1 cut(s)	119
MluCI	AATT	3 cut(s)	9, 119, 562
MluI	ACGCGT	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	9 cut(s)	51, 107, 301, 347, 350, 492, 544, 595, 643
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	441
MunI	CAATTG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	311, 342, 587
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	5 cut(s)	52, 59, 240, 379, 463
NlaIV	GGNNCC	1 cut(s)	96
NspV	TTCGAA	1 cut(s)	614
OliI	CACNNNNGTG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	592, 595, 640
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	3 cut(s)	591, 594, 639
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	441
SfaNI	GCATC	2 cut(s)	292, 384
SfcI	CTRYAG	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	614
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	68
Sse9I	AATT	3 cut(s)	9, 119, 562
SsiI	CCGC	2 cut(s)	639, 664
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	4 cut(s)	219, 293, 385, 670
TaqI	TCGA	2 cut(s)	288, 614
TasI	AATT	3 cut(s)	9, 119, 562
TauI	GCSGC	1 cut(s)	641
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	2 cut(s)	590, 593
TspDTI	ATGAA	2 cut(s)	448, 598
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	463
XapI	RAATTY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.