Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

19627112 .. 19628633

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g18740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTGCTGTGCAGAAGGAGATCCGTAGAAACAGAATATTGGTTTATGGCTATCTCGAGAATAATAGCCTAGCACAAACACTTCTTGGTAGAGGCTACAGCAGTATCCAATTTACTTGGCCTACAAGGTGTAAAATTTGCATTGGTGTTGCAAGGGGGCTCGCTTATCTCCATGAGGAGGTTAGCCCTCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTCCTTGATAAAGACCTCTCACCAAAAATTTCAGATTTTGGTCTTGCAAAGTTTATTGCACCTAACTTGACCCATCTTAGCACTCGTGTTGCTGGAACAACAGGCTACTTGGCGCCTGAGTATGCGATACGAAGTCAAGTGACAAGGAAATCAGACATCTACAGTTTTGGCATTTTACTGTTGGAAATTGTTTGTGGGAGGTGTAACACAAACAGACATTTACCACCCAAAGAACAATATCTTCTGGCACGGGCGTGGGAACACCATCAGAAGGGGCAGCTGGTGGAGTTAGTAGATGCATCATTGAATAGAGACTTCGACGTTGAGGAGGCTTGCAGATTCCTAAAGATTGGCCTTCTCTGCATTCAAGACATGCCCAAGCTCCGACCATCCATGTCTACTGTTGTTCAAATGCTGACGGGTGCATTAGATGTGAATGAGGGGCAGATATCGAAACCAGGACTGCTTTCTGAATTTATGGAGCAGAGAGAATGCGAGAGAGAAAAGGCCAAAGCAAGAAATCCATCTCACACGATATCCGACTCAGGGAGGTTTATCAATTCATCATCTTCATCAGAGACCGCCACCACATCATTTGCTACTATGACCTTCAATTCTATATATGACCGAAGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

288

Amino Acids

32.28

Weight (kDa)

8.79

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	623
AciI	CCGC	1 cut(s)	807
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	3 cut(s)	135, 252, 698
AcyI	GRCGYC	1 cut(s)	338
AfiI	CCNNNNNNNGG	3 cut(s)	178, 496, 771
AgsI	TTSAA	4 cut(s)	532, 593, 635, 838
AjnI	CCWGG	1 cut(s)	682
AleI	CACNNNNGTG	1 cut(s)	478
AluBI	AGCT	2 cut(s)	505, 607
AluI	AGCT	2 cut(s)	505, 607
Alw26I	GTCTC	3 cut(s)	198, 531, 797
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	119, 577, 732
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	3 cut(s)	135, 252, 698
AspLEI	GCGC	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	56
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	4 cut(s)	306, 498, 622, 757
BciT130I	CCWGG	1 cut(s)	684
BciVI	GTATCC	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	198, 531, 797
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	97, 385
BfoI	RGCGCY	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	511, 533
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	797
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 496, 771
BseBI	CCWGG	1 cut(s)	684
BseGI	GGATG	1 cut(s)	614
BseLI	CCNNNNNNNGG	3 cut(s)	178, 496, 771
BseMII	CTCAG	2 cut(s)	333, 783
BseRI	GAGGAG	2 cut(s)	191, 566
BseXI	GCAGC	1 cut(s)	514
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	121, 579, 734
BshNI	GGYRCC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	178, 496, 771
BsmAI	GTCTC	3 cut(s)	198, 531, 797
BsmI	GAATGC	2 cut(s)	588, 722
BsnI	GGCC	3 cut(s)	121, 579, 734
Bso31I	GGTCTC	1 cut(s)	797
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	807
BspANI	GGCC	3 cut(s)	121, 579, 734
BspCNI	CTCAG	2 cut(s)	334, 782
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	797
BssMI	GATC	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	338
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	3 cut(s)	389, 405, 628
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	162, 217, 559
BstDEI	CTNAG	3 cut(s)	302, 342, 769
BstF5I	GGATG	1 cut(s)	614
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	3 cut(s)	198, 531, 797
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	585
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	682
BstSFI	CTRYAG	2 cut(s)	97, 385
BstV1I	GCAGC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	116
BsuRI	GGCC	3 cut(s)	121, 579, 734
BtsCI	GGATG	1 cut(s)	614
Cac8I	GCNNGC	3 cut(s)	162, 217, 559
CfoI	GCGC	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	802, 837
CviAII	CATG	3 cut(s)	173, 598, 619
DdeI	CTNAG	3 cut(s)	302, 342, 769
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	797
Eco32I	GATATC	2 cut(s)	675, 762
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	682
EcoRV	GATATC	2 cut(s)	675, 762
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	162
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
FaeI	CATG	3 cut(s)	176, 601, 622
FatI	CATG	3 cut(s)	172, 597, 618
FblI	GTMKAC	1 cut(s)	623
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	503
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	3 cut(s)	121, 579, 734
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	176, 601, 622
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	2 cut(s)	564, 767
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	7 cut(s)	259, 379, 495, 611, 697, 766, 802
Hpy188III	TCNNGA	3 cut(s)	56, 58, 593
Hpy8I	GTNNAC	1 cut(s)	624
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	10, 490, 590, 844
HpyCH4III	ACNGT	3 cut(s)	389, 405, 628
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	9 cut(s)	13, 141, 152, 272, 284, 524, 561, 588, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	585
HpyF3I	CTNAG	3 cut(s)	302, 342, 769
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	176, 601, 622
HspAI	GCGC	1 cut(s)	338
KasI	GGCGCC	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	612, 706
LpnPI	CCDG	8 cut(s)	303, 312, 354, 455, 491, 669, 696, 756
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	511, 533
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	364, 428
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	2 cut(s)	458, 786
MflI	RGATCY	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	8 cut(s)	110, 135, 252, 411, 698, 784, 838, 859
Mly113I	GGCGCC	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	761
MmeI	TCCRAC	3 cut(s)	387, 634, 789
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	478
MspA1I	CMGCKG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	684
Mva1269I	GAATGC	2 cut(s)	588, 722
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	1 cut(s)	585
NarI	GGCGCC	1 cut(s)	338
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	3 cut(s)	176, 601, 622
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	601
OliI	CACNNNNGTG	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	56
PctI	GAATGC	2 cut(s)	588, 722
PfeI	GAWTC	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	761
PluTI	GGCGCC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	761
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	511, 533
SfcI	CTRYAG	2 cut(s)	97, 385
SfoI	GGCGCC	1 cut(s)	339
Sfr274I	CTCGAG	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	8 cut(s)	110, 135, 252, 411, 698, 784, 838, 859
SsiI	CCGC	1 cut(s)	807
SspDI	GGCGCC	1 cut(s)	337
SspI	AATATT	2 cut(s)	39, 223
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	682
TaaI	ACNGT	3 cut(s)	389, 405, 628
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	57, 543, 677
TasI	AATT	8 cut(s)	110, 135, 252, 411, 698, 784, 838, 859
TfiI	GAWTC	1 cut(s)	564
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	777, 786
TspGWI	ACGGA	1 cut(s)	14
XapI	RAATTY	3 cut(s)	135, 252, 698
XceI	RCATGY	1 cut(s)	601
XhoI	CTCGAG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	623
XspI	CTAG	1 cut(s)	71
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.