Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041046.1

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 847

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

acatggaatctctatgaacgcagggagctggttggtctggtagacacagcattgaacggggattttgatgctgaggaggcttgtagattcttaaagattggtcttctctgcacacaagacactccgaagctcagaccatccatgtcaactgtggtgaagatgctaaaaggtcagaaggaaatcgacgatactaagataacaaagccaggcttgatatctgatttcatggatctcaaaatacgaagccaaccgaatagtaagaagcctagcgaaaagaccactgcttcgtcctacaatgagtcctctggttcagacaacccggacaattcaaacctgtcatcagaaacctcagctgctgctacttccactttcatcacaaacttgtcgtttgaaaccatgcctccgggtactacaaccttcagcttcaaaaccatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.94

Weight (kDa)

5.2

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	403
AfaI	GTAC	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	55, 330, 392, 427
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	4 cut(s)	28, 130, 353, 423
AluI	AGCT	4 cut(s)	28, 130, 353, 423
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	356
ApeKI	GCWGC	2 cut(s)	353, 356
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AsuC2I	CCSGG	2 cut(s)	320, 405
AsuHPI	GGTGA	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	95
BbvCI	CCTCAGC	2 cut(s)	72, 349
BbvI	GCAGC	2 cut(s)	340, 343
BccI	CCATC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	320, 405
BfaI	CTAG	1 cut(s)	267
BisI	GCNGC	2 cut(s)	354, 357
BlsI	GCNGC	2 cut(s)	355, 358
Bme1390I	CCNGG	3 cut(s)	207, 320, 405
BmrFI	CCNGG	3 cut(s)	207, 320, 405
BmsI	GCATC	2 cut(s)	58, 150
BpiI	GAAGAC	1 cut(s)	95
Bpu10I	CCTNAGC	2 cut(s)	72, 349
BpuMI	CCSGG	2 cut(s)	320, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
BseBI	CCWGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	137
BseMII	CTCAG	3 cut(s)	63, 145, 363
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	340, 343
BsgI	GTGCAG	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	320, 404
Bsp143I	GATC	1 cut(s)	229
BspCNI	CTCAG	3 cut(s)	64, 144, 362
BspPI	GGATC	1 cut(s)	237
BssMI	GATC	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	72, 131, 192, 349
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	3 cut(s)	205, 318, 403
BstV1I	GCAGC	2 cut(s)	340, 343
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	137
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	356
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	4 cut(s)	3, 142, 226, 397
CviJI	RGCY	9 cut(s)	28, 80, 130, 205, 210, 246, 265, 353, 423
CviKI_1	RGCY	9 cut(s)	28, 80, 130, 205, 210, 246, 265, 353, 423
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	72, 131, 192, 349
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	216
FaeI	CATG	4 cut(s)	6, 145, 229, 400
FaiI	YATR	7 cut(s)	4, 15, 143, 227, 398, 434, 436
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	4 cut(s)	2, 141, 225, 396
FauNDI	CATATG	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	354, 357
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	354, 357
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	2 cut(s)	354, 357
HapII	CCGG	2 cut(s)	320, 404
Hin1II	CATG	4 cut(s)	6, 145, 229, 400
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	3 cut(s)	7, 87, 299
HpaII	CCGG	2 cut(s)	320, 404
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	43, 147
Hpy188I	TCNGA	6 cut(s)	126, 134, 174, 220, 313, 343
Hpy8I	GTNNAC	2 cut(s)	43, 147
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	169, 427
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	4 cut(s)	72, 131, 192, 349
Hsp92II	CATG	4 cut(s)	6, 145, 229, 400
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	9 cut(s)	7, 14, 23, 192, 219, 291, 333, 347, 417
Lsp1109I	GCAGC	2 cut(s)	340, 343
LweI	GCATC	2 cut(s)	58, 150
MaeI	CTAG	1 cut(s)	267
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	95, 169
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	5 cut(s)	67, 70, 313, 358, 411
MseI	TTAA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	320, 404
MspR9I	CCNGG	3 cut(s)	207, 320, 405
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	320, 405
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	6, 145, 229, 400
PfeI	GAWTC	2 cut(s)	7, 87
PkrI	GCNGC	2 cut(s)	355, 358
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	354, 357
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	207, 320, 405
SetI	ASST	8 cut(s)	30, 132, 172, 336, 350, 355, 419, 425
SfaNI	GCATC	2 cut(s)	58, 150
Sse9I	AATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	205, 318, 403
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	7, 87
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	353, 356
TspDTI	ATGAA	3 cut(s)	30, 214, 361
TspRI	CASTG	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.