Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

8261528 .. 8266035

Gene Structure 4508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G143900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAGTTGTTTTTCCTTCTTATGTAGAGGGGTGAACTCATCAAAAAAACCCGGTTCTGATGTTGATAAAGAACTCTCTGGCATTCCTGATGTTAAACTTTACACTTACAAAGAGATGAGAATCGCAACTGAAGATTTTAGTCCAGCCAATAAGATCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGACAACTTAAAGATGGAAAAATGGCTGCTATTAAAGTTCTTTCAGCTGAATCAAAACAAGGGGTGAAGGAGTTTTTGACAGAGATTGACGTGATCTCAAAAATAGAGCATGAAAATCTAGTTAAGCTCTACGGCTGTTGTGTTGAAGAAAACCAAAGAATTTTGGTCTACAACTACCTTGAGAATAATAGTCTTGCACAAACTCTTATTGGTGGGGGTCACAGTAATATCCAGTTCAGTTGGCGAACTCGGCGTGAAATATGCATTGGGATTGCATGTGGTCTTGCCTTCCTTCATGAGGAAGTACGTCCACATATTATTCATAGGGATATCAAAGCCAGCAATATTCTCCTAGATAGAGACCTAATGCCTAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCACCCAACATGACCCATGTTAGCACCCGTGTGGCAGGAACAATAGGTTATTTGGCACCAGAGTACGCAATACGAGGGCAATTGACAAGGAAAGCAGATATTTATAGCTTTGGGGTGCTCCTTGTGGAAATAGTCAGTGGAAGATGTAATACAAATACACGACTACCAATTGACGAACAGTATCTGCTTGAAAGGACATGGCAAGTCTACGAGCGGAGGGAGCTTGTTGGACTGGTAGACACATCATTGGACGGTGATTTTGATGCCGAGGAAGCTTGTAGGTTTTTAAAGATTGCCCTCCTCTGCACCCAAGACACTCCGAAGCTCAGGCCGTCCATGTCATCCGTGGTCAAGATGCTAAGAGGTGAGAAGGCTGTTGACGATAATAAGATAACAAAGCCAGGGTTAATATCTGATTTCATGGATCTCAAAGTAAGACCCCCTCAGAATGCCAAGCCTGGTAGCACAATGACTACTACGTGTACCAATAATGCGTCCTCTGGTTCAGACAGCCAGGACAATTCAACCTTGTCATTAGAAACCTCAGCTGCTGCTACTTCCACCTTCATTTCAACCATGTCATCAGAAACCTCAGCTGCTAATACTATGAGCTTCACCTTCGGCACTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

44.85

Weight (kDa)

6.35

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	646
AccBSI	CCGCTC	1 cut(s)	805
AccI	GTMKAC	3 cut(s)	354, 798, 828
AciI	CCGC	1 cut(s)	805
AclWI	GGATC	1 cut(s)	1023
AcsI	RAATTY	2 cut(s)	345, 561
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	3 cut(s)	492, 656, 1075
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	1 cut(s)	1070
AgsI	TTSAA	4 cut(s)	332, 782, 1116, 1164
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	3 cut(s)	991, 1048, 1104
AjuI	GAANNNNNNNTTGG	4 cut(s)	153, 185, 435, 467
AleI	CACNNNNGTG	1 cut(s)	620
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	1 cut(s)	1023
AlwNI	CAGNNNCTG	2 cut(s)	775, 1142
AoxI	GGCC	1 cut(s)	920
ApeKI	GCWGC	4 cut(s)	212, 1139, 1142, 1187
ApoI	RAATTY	2 cut(s)	345, 561
ArsI	GACNNNNNNTTYG	2 cut(s)	833, 865
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	5 cut(s)	43, 262, 857, 968, 1198
BanI	GGYRCC	1 cut(s)	646
BarI	GAAGNNNNNNTAC	2 cut(s)	724, 756
Bbv12I	GWGCWC	1 cut(s)	711
BbvCI	CCTCAGC	2 cut(s)	1135, 1183
BbvI	GCAGC	4 cut(s)	199, 1126, 1129, 1174
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	334, 907
BciT130I	CCWGG	3 cut(s)	993, 1050, 1106
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	2 cut(s)	305, 539
BisI	GCNGC	4 cut(s)	213, 1140, 1143, 1188
BlsI	GCNGC	4 cut(s)	214, 1141, 1144, 1189
Bme1390I	CCNGG	4 cut(s)	51, 993, 1050, 1106
BmgBI	CACGTC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	4 cut(s)	51, 993, 1050, 1106
BmsI	GCATC	2 cut(s)	844, 936
Bpu10I	CCTNAGC	3 cut(s)	917, 1135, 1183
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	1071
BsaBI	GATNNNNATC	1 cut(s)	119
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	3 cut(s)	858, 936, 992
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	418, 828
Bse8I	GATNNNNATC	1 cut(s)	119
BseBI	CCWGG	3 cut(s)	993, 1050, 1106
BseDI	CCNNGG	3 cut(s)	858, 936, 992
BseGI	GGATG	1 cut(s)	932
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	4 cut(s)	931, 1049, 1149, 1197
BseNI	ACTGG	2 cut(s)	418, 828
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	4 cut(s)	199, 1126, 1129, 1174
BsgI	GTGCAG	1 cut(s)	880
BshFI	GGCC	1 cut(s)	922
BshNI	GGYRCC	1 cut(s)	646
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	2 cut(s)	81, 1045
BsnI	GGCC	1 cut(s)	922
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	153, 279, 1015
BspACI	CCGC	1 cut(s)	805
BspANI	GGCC	1 cut(s)	922
BspCNI	CTCAG	4 cut(s)	930, 1048, 1148, 1196
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	648
BspPI	GGATC	1 cut(s)	1023
BspT107I	GGYRCC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	540
BsrBI	CCGCTC	1 cut(s)	805
BsrI	ACTGG	2 cut(s)	418, 828
BssECI	CCNNGG	3 cut(s)	858, 936, 992
BssMI	GATC	3 cut(s)	153, 279, 1015
Bst2UI	CCWGG	3 cut(s)	993, 1050, 1106
Bst4CI	ACNGT	4 cut(s)	410, 771, 845, 1219
BstBAI	YACGTR	1 cut(s)	1071
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	5 cut(s)	917, 950, 1035, 1135, 1183
BstDSI	CCRYGG	1 cut(s)	936
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	932
BstKTI	GATC	3 cut(s)	156, 282, 1018
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	153, 279, 1015
BstMWI	GCNNNNNNNGC	3 cut(s)	436, 811, 863
BstNI	CCWGG	3 cut(s)	993, 1050, 1106
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	4 cut(s)	49, 991, 1048, 1104
BstV1I	GCAGC	4 cut(s)	199, 1126, 1129, 1174
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
BsuRI	GGCC	1 cut(s)	922
BtgI	CCRYGG	1 cut(s)	936
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	932
BtsIMutI	CAGTG	2 cut(s)	733, 1215
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	2 cut(s)	775, 1142
CciI	TCATGA	1 cut(s)	481
CseI	GACGC	1 cut(s)	1074
Csp6I	GTAC	3 cut(s)	491, 655, 1074
CviAII	CATG	9 cut(s)	296, 462, 482, 601, 608, 789, 928, 1012, 1168
CviQI	GTAC	3 cut(s)	491, 655, 1074
DdeI	CTNAG	5 cut(s)	917, 950, 1035, 1135, 1183
DpnI	GATC	3 cut(s)	155, 281, 1017
DpnII	GATC	3 cut(s)	153, 279, 1015
DraI	TTTAAA	1 cut(s)	879
Eco31I	GGTCTC	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoRII	CCWGG	3 cut(s)	991, 1048, 1104
EcoRV	GATATC	1 cut(s)	517
EcoT22I	ATGCAT	1 cut(s)	452
FaeI	CATG	9 cut(s)	299, 465, 485, 604, 611, 792, 931, 1015, 1171
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	9 cut(s)	295, 461, 481, 600, 607, 788, 927, 1011, 1167
FblI	GTMKAC	3 cut(s)	354, 798, 828
Fnu4HI	GCNGC	4 cut(s)	213, 1140, 1143, 1188
FokI	GGATG	1 cut(s)	919
Fsp4HI	GCNGC	4 cut(s)	213, 1140, 1143, 1188
FspBI	CTAG	2 cut(s)	305, 539
GluI	GCNGC	4 cut(s)	213, 1140, 1143, 1188
HaeIII	GGCC	1 cut(s)	922
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	1074
Hin1II	CATG	9 cut(s)	299, 465, 485, 604, 611, 792, 931, 1015, 1171
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	2 cut(s)	584, 864
HinfI	GANTC	2 cut(s)	120, 236
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	5 cut(s)	43, 262, 857, 968, 1198
Hpy166II	GTNNAC	7 cut(s)	34, 355, 497, 799, 829, 970, 1074
Hpy188I	TCNGA	7 cut(s)	58, 568, 912, 1006, 1038, 1099, 1177
Hpy188III	TCNNGA	3 cut(s)	86, 482, 943
Hpy8I	GTNNAC	7 cut(s)	34, 355, 497, 799, 829, 970, 1074
HpyAV	CCTTC	8 cut(s)	25, 155, 247, 484, 488, 955, 1165, 1219
HpyCH4III	ACNGT	4 cut(s)	410, 771, 845, 1219
HpyCH4IV	ACGT	3 cut(s)	276, 493, 1070
HpyCH4V	TGCA	5 cut(s)	383, 450, 461, 581, 897
HpyF10VI	GCNNNNNNNGC	3 cut(s)	436, 811, 863
HpyF3I	CTNAG	5 cut(s)	917, 950, 1035, 1135, 1183
HpySE526I	ACGT	3 cut(s)	276, 493, 1070
Hsp92II	CATG	9 cut(s)	299, 465, 485, 604, 611, 792, 931, 1015, 1171
Kzo9I	GATC	3 cut(s)	153, 279, 1015
LmnI	GCTCC	2 cut(s)	714, 811
Lsp1109I	GCAGC	4 cut(s)	199, 1126, 1129, 1174
LweI	GCATC	2 cut(s)	844, 936
MaeI	CTAG	2 cut(s)	305, 539
MaeII	ACGT	3 cut(s)	276, 493, 1070
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	3 cut(s)	155, 281, 1017
MbiI	CCGCTC	1 cut(s)	805
MboI	GATC	3 cut(s)	153, 279, 1015
MboII	GAAGA	3 cut(s)	143, 344, 744
MfeI	CAATTG	2 cut(s)	671, 759
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	1 cut(s)	711
MluCI	AATT	5 cut(s)	345, 561, 671, 759, 1111
MmeI	TCCRAC	1 cut(s)	799
Mph1103I	ATGCAT	1 cut(s)	452
MseI	TTAA	6 cut(s)	93, 195, 219, 309, 878, 998
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	3 cut(s)	233, 1139, 1187
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	4 cut(s)	51, 993, 1050, 1106
MunI	CAATTG	2 cut(s)	671, 759
Mva1269I	GAATGC	2 cut(s)	81, 1045
MvaI	CCWGG	3 cut(s)	993, 1050, 1106
MwoI	GCNNNNNNNGC	3 cut(s)	436, 811, 863
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	3 cut(s)	153, 279, 1015
NlaIII	CATG	9 cut(s)	299, 465, 485, 604, 611, 792, 931, 1015, 1171
NlaIV	GGNNCC	1 cut(s)	648
NmeAIII	GCCGAG	2 cut(s)	415, 883
NmuCI	GTSAC	1 cut(s)	404
NsiI	ATGCAT	1 cut(s)	452
NspI	RCATGY	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	620
PagI	TCATGA	1 cut(s)	481
PctI	GAATGC	2 cut(s)	81, 1045
PfeI	GAWTC	2 cut(s)	120, 236
PkrI	GCNGC	4 cut(s)	214, 1141, 1144, 1189
Ppu21I	YACGTR	1 cut(s)	1071
Psp6I	CCWGG	3 cut(s)	991, 1048, 1104
PspGI	CCWGG	3 cut(s)	991, 1048, 1104
PspN4I	GGNNCC	1 cut(s)	648
PstNI	CAGNNNCTG	2 cut(s)	775, 1142
PsuI	RGATCY	1 cut(s)	1015
PvuII	CAGCTG	3 cut(s)	233, 1139, 1187
RsaI	GTAC	3 cut(s)	492, 656, 1075
RsaNI	GTAC	3 cut(s)	491, 655, 1074
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	6 cut(s)	93, 195, 219, 309, 878, 998
SatI	GCNGC	4 cut(s)	213, 1140, 1143, 1188
Sau3AI	GATC	3 cut(s)	153, 279, 1015
ScrFI	CCNGG	4 cut(s)	51, 993, 1050, 1106
SduI	GDGCHC	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	844, 936
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	345, 561, 671, 759, 1111
SsiI	CCGC	1 cut(s)	805
SspI	AATATT	1 cut(s)	532
SspMI	CTAG	2 cut(s)	305, 539
StyD4I	CCNGG	4 cut(s)	49, 991, 1048, 1104
TaaI	ACNGT	4 cut(s)	410, 771, 845, 1219
TaiI	ACGT	3 cut(s)	279, 496, 1073
TasI	AATT	5 cut(s)	345, 561, 671, 759, 1111
TfiI	GAWTC	2 cut(s)	120, 236
Tru1I	TTAA	6 cut(s)	93, 195, 219, 309, 878, 998
Tru9I	TTAA	6 cut(s)	93, 195, 219, 309, 878, 998
TscAI	CASTG	2 cut(s)	733, 1222
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	4 cut(s)	212, 1139, 1142, 1187
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	5 cut(s)	312, 470, 497, 1000, 1147
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	2 cut(s)	733, 1222
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	2 cut(s)	345, 561
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XmiI	GTMKAC	3 cut(s)	354, 798, 828
XspI	CTAG	2 cut(s)	305, 539
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.