Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

22677529 .. 22679275

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCTAAAATTTCAGATTTTGGTCTTGCAAAACTTATCCCTCCCAACATGACCCATGTTAGCACACGTGTTGCAGGAACAATAGGTTATTTGGCACCAGAATATGCAATACGTGGGCAATTGACAAGGAAAGCAGATATTTATAGCTTCGGAGTGCTCCTAATGGAAATAGTCAGTGGCAGATGTAATACAAATACACGACTACCAATTGGCGAACAGTATCTGCTTGAAAGGACATGGAAACTCTACGAACAGAGGGAGCTTGTTGGGCTAGTAGACACATCACTCGACGGTGATTTTGACGCTGAGGAGGCTTGTAGGTTTCTAAAGATCGGTCTCCTCTGCACCCAAGACACTCCGAAGCTCAGGCCATCCATGTCAAATGTGGTCAAGATGCTAAAAGGCGAGAAGGTTGTGGACGACAAGATAACAAAGCCAGGCTTAATATCCGATTTCATGGATCTCAGAGTACGAGGCCCTCATGACACCAAGCCTAGCGCAGAGACGACAACATCTTCCTATAATGCGTCCGCTGGCTCAGGCTCAGACAACCAGTACAATTCAACCTTCTCATTAGCATCCTCAGCTGCTGCTACCACCACTACCACCTTCATTTTGAACTTGTCATCGGAAACCTCAGCCGCTAATACCAAGAACTTCAGCTTCCGCACCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

226

Amino Acids

24.64

Weight (kDa)

7.67

Isoelectric Point (pI)

20.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	3 cut(s)	531, 642, 667
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	643
AcvI	CACGTG	1 cut(s)	68
AfaI	GTAC	2 cut(s)	471, 557
AflIII	ACRYGT	2 cut(s)	65, 67
AgsI	TTSAA	3 cut(s)	230, 564, 619
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	5 cut(s)	147, 262, 364, 587, 663
AluI	AGCT	5 cut(s)	147, 262, 364, 587, 663
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	2 cut(s)	341, 497
AlwI	GGATC	1 cut(s)	468
AlwNI	CAGNNNCTG	2 cut(s)	223, 590
AoxI	GGCC	2 cut(s)	368, 475
ApeKI	GCWGC	2 cut(s)	587, 590
ApoI	RAATTY	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	94
BbrPI	CACGTG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	3 cut(s)	306, 583, 637
BbvI	GCAGC	2 cut(s)	574, 577
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	341, 497
BfaI	CTAG	2 cut(s)	272, 495
BisI	GCNGC	3 cut(s)	588, 591, 642
BlsI	GCNGC	3 cut(s)	589, 592, 643
Bme1390I	CCNGG	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	384, 587
Bpu10I	CCTNAGC	5 cut(s)	306, 365, 538, 583, 637
BsaAI	YACGTR	2 cut(s)	68, 113
BsaI	GGTCTC	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	553
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	371, 578
BseMII	CTCAG	7 cut(s)	297, 379, 478, 552, 558, 597, 651
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	323, 329
BseXI	GCAGC	2 cut(s)	574, 577
BsgI	GTGCAG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	370, 477
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	341, 497
BsmBI	CGTCTC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	370, 477
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	330, 460
BspACI	CCGC	3 cut(s)	531, 642, 667
BspANI	GGCC	2 cut(s)	370, 477
BspCNI	CTCAG	7 cut(s)	298, 378, 477, 551, 557, 596, 650
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	553
BssMI	GATC	2 cut(s)	330, 460
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	219, 293
BstBAI	YACGTR	2 cut(s)	68, 113
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	7 cut(s)	306, 365, 464, 538, 544, 583, 637
BstF5I	GGATG	2 cut(s)	371, 578
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	2 cut(s)	333, 463
BstMAI	GTCTC	2 cut(s)	341, 497
BstMBI	GATC	2 cut(s)	330, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 311, 584
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstV1I	GCAGC	2 cut(s)	574, 577
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	2 cut(s)	370, 477
BtsCI	GGATG	2 cut(s)	371, 578
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	535
CaiI	CAGNNNCTG	2 cut(s)	223, 590
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	2 cut(s)	311, 516
Csp6I	GTAC	2 cut(s)	470, 556
CviAII	CATG	6 cut(s)	49, 56, 237, 376, 457, 482
CviQI	GTAC	2 cut(s)	470, 556
DdeI	CTNAG	7 cut(s)	306, 365, 464, 538, 544, 583, 637
DpnI	GATC	2 cut(s)	332, 462
DpnII	GATC	2 cut(s)	330, 460
Eco31I	GGTCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	643
Eco72I	CACGTG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	6 cut(s)	52, 59, 240, 379, 460, 485
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	6 cut(s)	48, 55, 236, 375, 456, 481
FauNDI	CATATG	1 cut(s)	674
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	588, 591, 642
FokI	GGATG	2 cut(s)	358, 565
Fsp4HI	GCNGC	3 cut(s)	588, 591, 642
FspBI	CTAG	2 cut(s)	272, 495
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	3 cut(s)	588, 591, 642
HaeIII	GGCC	2 cut(s)	370, 477
HgaI	GACGC	2 cut(s)	311, 516
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	6 cut(s)	52, 59, 240, 379, 460, 485
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	277, 418
Hpy188I	TCNGA	7 cut(s)	16, 152, 360, 451, 467, 547, 631
Hpy188III	TCNNGA	2 cut(s)	391, 482
Hpy8I	GTNNAC	2 cut(s)	277, 418
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	403, 577, 619
HpyCH4III	ACNGT	2 cut(s)	219, 293
HpyCH4IV	ACGT	2 cut(s)	67, 112
HpyCH4V	TGCA	4 cut(s)	29, 74, 107, 345
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 311, 584
HpyF3I	CTNAG	7 cut(s)	306, 365, 464, 538, 544, 583, 637
HpySE526I	ACGT	2 cut(s)	67, 112
Hsp92II	CATG	6 cut(s)	52, 59, 240, 379, 460, 485
HspAI	GCGC	1 cut(s)	498
Kzo9I	GATC	2 cut(s)	330, 460
LmnI	GCTCC	2 cut(s)	162, 259
LpnPI	CCDG	8 cut(s)	60, 111, 352, 423, 450, 519, 525, 566
Lsp1109I	GCAGC	2 cut(s)	574, 577
LweI	GCATC	2 cut(s)	384, 587
MaeI	CTAG	2 cut(s)	272, 495
MaeII	ACGT	2 cut(s)	67, 112
MalI	GATC	2 cut(s)	332, 462
MboI	GATC	2 cut(s)	330, 460
MboII	GAAGA	1 cut(s)	507
MfeI	CAATTG	2 cut(s)	119, 207
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	4 cut(s)	9, 119, 207, 559
MnlI	CCTC	9 cut(s)	51, 249, 301, 304, 350, 467, 489, 592, 646
MseI	TTAA	1 cut(s)	443
MspA1I	CMGCKG	2 cut(s)	533, 587
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	2 cut(s)	119, 207
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	3 cut(s)	268, 311, 584
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	2 cut(s)	330, 460
NlaIII	CATG	6 cut(s)	52, 59, 240, 379, 460, 485
NlaIV	GGNNCC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	481
PkrI	GCNGC	3 cut(s)	589, 592, 643
PmaCI	CACGTG	1 cut(s)	68
PmlI	CACGTG	1 cut(s)	68
Ppu21I	YACGTR	2 cut(s)	68, 113
Psp6I	CCWGG	1 cut(s)	436
PspCI	CACGTG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	476
PstNI	CAGNNNCTG	2 cut(s)	223, 590
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	471, 557
RsaNI	GTAC	2 cut(s)	470, 556
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	3 cut(s)	588, 591, 642
Sau3AI	GATC	2 cut(s)	330, 460
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	2 cut(s)	384, 587
Sse9I	AATT	4 cut(s)	9, 119, 207, 559
SsiI	CCGC	3 cut(s)	531, 642, 667
SspMI	CTAG	2 cut(s)	272, 495
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	219, 293
TaiI	ACGT	2 cut(s)	70, 115
TaqI	TCGA	1 cut(s)	288
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	4 cut(s)	9, 119, 207, 559
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	644
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	2 cut(s)	587, 590
TspDTI	ATGAA	2 cut(s)	445, 601
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	2 cut(s)	272, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.