Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

8568291 .. 8571529

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0096800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAGTCATGCCCTACCATAAAGAACATCCTCCTCCTAGATTCTGAAGGAAAACGTATAGCTGTCAAGTATTATTCAGAGGACTGGCCAATGAATAGTGCAAAAGAAGCTTTTGAGAAAACCGTTTTCACTAAAACTCAAAAGACAAATGCGCGGACAGAAGCTGAGATAGCAATGTTTGAGAACAGCATAGTAGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTTACCGGGGGTGATAATGAAAATGAGCTCATTTTAGCCACAGTTCTTCAGGGATTTTTTGATGCAGTTGGAATTCTCCTCAGAGGCAATGTGGACAAAAAGGAGGCACTTGAGAATTTGGACCTCATTCTACTATGCCTTGATGAAATTGTTGATGGCGGCATTGTTCTTGAGACCGATTCAAATGTTATAGCAAGTAAGGTTGCGAGTCATAGTATTGATTCTGGAGCTCCGTTATCTGAGCAGACAATAGGCCAAGCACTTGCTACTGCACGTGAACATTTTGCAAGATCTCTTCTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.53

Weight (kDa)

4.75

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	6 - 146	8.8e-24	Clathrin adaptor complex small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	154
AciI	CCGC	2 cut(s)	154, 387
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	300, 343
AcuI	CTGAAG	2 cut(s)	66, 260
AcvI	CACGTG	1 cut(s)	503
AflII	CTTAAG	1 cut(s)	527
AgsI	TTSAA	2 cut(s)	212, 411
AluBI	AGCT	5 cut(s)	62, 110, 164, 256, 458
AluI	AGCT	5 cut(s)	62, 110, 164, 256, 458
Alw21I	GWGCWC	2 cut(s)	258, 460
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	86, 481
ApoI	RAATTY	2 cut(s)	300, 343
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	88
BanII	GRGCYC	2 cut(s)	258, 460
BbrPI	CACGTG	1 cut(s)	503
Bbv12I	GWGCWC	2 cut(s)	258, 460
BccI	CCATC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	38
BfrI	CTTAAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	359, 419
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	2 cut(s)	180, 322
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	27
BseMI	GCAATG	2 cut(s)	180, 322
BseMII	CTCAG	3 cut(s)	156, 322, 459
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	23, 296
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	88, 483
BsiHKAI	GWGCWC	2 cut(s)	258, 460
BsiSI	CCGG	1 cut(s)	234
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	88, 483
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	258, 460
Bsp143I	GATC	1 cut(s)	518
BspACI	CCGC	2 cut(s)	154, 387
BspANI	GGCC	2 cut(s)	88, 483
BspCNI	CTCAG	3 cut(s)	157, 321, 460
BspFNI	CGCG	1 cut(s)	154
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	2 cut(s)	180, 322
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	518
Bst4CI	ACNGT	2 cut(s)	124, 271
Bst6I	CTCTTC	1 cut(s)	528
BstAFI	CTTAAG	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	165, 308, 468
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 170
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	88, 483
BtsCI	GGATG	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	349
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	8 cut(s)	62, 88, 110, 164, 256, 266, 458, 483
CviKI_1	RGCY	8 cut(s)	62, 88, 110, 164, 256, 266, 458, 483
DdeI	CTNAG	3 cut(s)	165, 308, 468
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	2 cut(s)	256, 458
Eco24I	GRGCYC	2 cut(s)	258, 460
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	2 cut(s)	256, 458
Eco57I	CTGAAG	2 cut(s)	66, 260
Eco72I	CACGTG	1 cut(s)	503
EcoICRI	GAGCTC	2 cut(s)	256, 458
EcoRI	GAATTC	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	258, 460
FaeI	CATG	1 cut(s)	12
FaiI	YATR	7 cut(s)	10, 20, 59, 191, 364, 419, 441
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	258, 460
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	88, 483
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	5 cut(s)	5, 41, 407, 436, 449
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	199, 322, 506
Hpy188I	TCNGA	4 cut(s)	46, 79, 311, 469
Hpy188III	TCNNGA	3 cut(s)	212, 398, 453
Hpy8I	GTNNAC	3 cut(s)	199, 322, 506
HpyAV	CCTTC	2 cut(s)	41, 227
HpyCH4III	ACNGT	2 cut(s)	124, 271
HpyCH4IV	ACGT	2 cut(s)	55, 502
HpyCH4V	TGCA	4 cut(s)	101, 293, 500, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 170
HpyF3I	CTNAG	3 cut(s)	165, 308, 468
HpySE526I	ACGT	2 cut(s)	55, 502
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	518
LmnI	GCTCC	2 cut(s)	455, 463
LpnPI	CCDG	4 cut(s)	70, 247, 263, 438
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	55, 502
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	2 cut(s)	266, 515
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	258, 460
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	3 cut(s)	300, 343, 375
MluNI	TGGCCA	1 cut(s)	88
MlyI	GAGTC	2 cut(s)	14, 445
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	41, 44, 73, 305, 317, 325, 362
Mox20I	TGGCCA	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	88
MseI	TTAA	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	88
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	107, 170
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	41, 407, 449
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	2 cut(s)	13, 444
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
PpsI	GAGTC	2 cut(s)	13, 444
Ppu21I	YACGTR	1 cut(s)	503
Psp124BI	GAGCTC	2 cut(s)	258, 460
PspCI	CACGTG	1 cut(s)	503
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	518
SacI	GAGCTC	2 cut(s)	258, 460
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	1 cut(s)	518
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	14, 445
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	258, 460
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	3 cut(s)	338, 398, 527
SmoI	CTYRAG	3 cut(s)	338, 398, 527
Sse9I	AATT	3 cut(s)	300, 343, 375
SsiI	CCGC	2 cut(s)	154, 387
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	2 cut(s)	258, 460
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	2 cut(s)	124, 271
TaiI	ACGT	2 cut(s)	58, 505
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	3 cut(s)	300, 343, 375
TauI	GCSGC	1 cut(s)	390
TfiI	GAWTC	3 cut(s)	41, 407, 449
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TspDTI	ATGAA	3 cut(s)	107, 261, 387
TspGWI	ACGGA	1 cut(s)	450
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	300, 343
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.