Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

11066788 .. 11067706

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0124800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAATCCTATAAGCAAGGATTGTTACAACGAGAACGGCTCTAATGTGGAGTACAAAGTTCCTGGGCTCAATTATTATCCTCCTTTCAGCATTTCCGGTCGCAAAAACAAATTCGTCGCCGTAGGCTGCGACACTTCTGCTATTTTCCGGGGTTTTCCTGGTGAACAAGTGTTCTTCACGGGGTGCATGTCCTTGTGCCCCAACATCAGCACCGTGGATCAAGACTCTTGCTCTGGTGTCGGGTGTTACAATCATATGGATATATGGGAATTTAACCCCTGCAGCTATGCCTTCGTTGTGCAAGATGGCTACTTTAACTTCAGTGGTAAGAGGAGTTTCGAACATCTCAAGAACATGGAGCAGATTCCAATGATTATTAATTGGCAGATTGGAAATGAGACATGCGAGGGAGCTAAAAAGAATGCGGTGGATTATGCATGCAAGGAATATTCCGAGTGTGTCACCACCCAGACAAAGGACCCATACCCTGGTTACTATTGCAAGTGTAAGAAAGGCTACATTGTTTCATTTTTCTTTAATTCGCAATACATCGGTTGCCAAGGTGTTCTCTTTGCCGATACAGATCTAGTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

198

Amino Acids

22.35

Weight (kDa)

5.4

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	110, 269
AcuI	CTGAAG	1 cut(s)	304
AdeI	CACNNNGTG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	475, 488
AjnI	CCWGG	3 cut(s)	61, 157, 487
AluBI	AGCT	2 cut(s)	285, 413
AluI	AGCT	2 cut(s)	285, 413
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	126, 282
ApoI	RAATTY	2 cut(s)	110, 269
AseI	ATTAAT	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	173, 454
AsuII	TTCGAA	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	478
BaeGI	GKGCMC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	113, 294
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	2 cut(s)	52, 104
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	3 cut(s)	63, 159, 489
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	280
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	2 cut(s)	127, 283
BlsI	GCNGC	2 cut(s)	128, 284
Bme1390I	CCNGG	4 cut(s)	63, 149, 159, 489
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	4 cut(s)	63, 149, 159, 489
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
Bpu14I	TTCGAA	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	5 cut(s)	62, 148, 213, 487, 559
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	475, 488
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	63, 159, 489
BseDI	CCNNGG	5 cut(s)	62, 148, 213, 487, 559
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	475, 488
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	113, 294
Bsh1285I	CGRYCG	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	96, 148
BslI	CCNNNNNNNGG	2 cut(s)	475, 488
BsmAI	GTCTC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	69, 200
Bsp143I	GATC	2 cut(s)	217, 583
BspACI	CCGC	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	284
BspPI	GGATC	1 cut(s)	225
BspT104I	TTCGAA	1 cut(s)	339
BssECI	CCNNGG	5 cut(s)	62, 148, 213, 487, 559
BssMI	GATC	2 cut(s)	217, 583
BssT1I	CCWWGG	1 cut(s)	559
Bst2UI	CCWGG	3 cut(s)	63, 159, 489
Bst4CI	ACNGT	1 cut(s)	214
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	439
BstDSI	CCRYGG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	220, 586
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	2 cut(s)	217, 583
BstMCI	CGRYCG	1 cut(s)	100
BstNI	CCWGG	3 cut(s)	63, 159, 489
BstNSI	RCATGY	3 cut(s)	190, 405, 441
BstSCI	CCNGG	4 cut(s)	61, 147, 157, 487
BstSFI	CTRYAG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	113, 294
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BtgI	CCRYGG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	4 cut(s)	187, 355, 402, 438
CviJI	RGCY	7 cut(s)	39, 67, 126, 285, 309, 413, 516
CviKI_1	RGCY	7 cut(s)	39, 67, 126, 285, 309, 413, 516
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	2 cut(s)	219, 585
DpnII	GATC	2 cut(s)	217, 583
DraIII	CACNNNGTG	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	478
EcoRII	CCWGG	3 cut(s)	61, 157, 487
EcoT14I	CCWWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	4 cut(s)	190, 358, 405, 441
FatI	CATG	4 cut(s)	186, 354, 401, 437
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	127, 283
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	127, 283
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	2 cut(s)	127, 283
HapII	CCGG	2 cut(s)	96, 148
Hin1II	CATG	4 cut(s)	190, 358, 405, 441
HinfI	GANTC	3 cut(s)	4, 224, 364
HpaII	CCGG	2 cut(s)	96, 148
HphI	GGTGA	2 cut(s)	173, 454
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	2 cut(s)	221, 349
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	6 cut(s)	186, 282, 301, 437, 441, 501
Hsp92II	CATG	4 cut(s)	190, 358, 405, 441
Kzo9I	GATC	2 cut(s)	217, 583
LmnI	GCTCC	2 cut(s)	358, 410
Lsp1109I	GCAGC	2 cut(s)	113, 294
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	4 cut(s)	23, 245, 460, 491
MalI	GATC	2 cut(s)	219, 585
MboI	GATC	2 cut(s)	217, 583
MboII	GAAGA	1 cut(s)	166
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	69, 200
MluCI	AATT	5 cut(s)	70, 110, 269, 379, 538
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	3 cut(s)	90, 324, 400
Mph1103I	ATGCAT	1 cut(s)	439
MseI	TTAA	4 cut(s)	273, 315, 378, 537
MspI	CCGG	2 cut(s)	96, 148
MspR9I	CCNGG	4 cut(s)	63, 149, 159, 489
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	3 cut(s)	63, 159, 489
NciI	CCSGG	1 cut(s)	149
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	2 cut(s)	217, 583
NlaIII	CATG	4 cut(s)	190, 358, 405, 441
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	460
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	3 cut(s)	190, 405, 441
NspV	TTCGAA	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	4, 364
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	128, 284
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	378
Psp5II	RGGWCCY	1 cut(s)	478
Psp6I	CCWGG	3 cut(s)	61, 157, 487
PspGI	CCWGG	3 cut(s)	61, 157, 487
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	478
PspPPI	RGGWCCY	1 cut(s)	478
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	4 cut(s)	273, 315, 378, 537
SatI	GCNGC	2 cut(s)	127, 283
Sau3AI	GATC	2 cut(s)	217, 583
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	4 cut(s)	63, 149, 159, 489
SduI	GDGCHC	2 cut(s)	69, 200
SetI	ASST	3 cut(s)	287, 415, 565
SfcI	CTRYAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	339
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	441
Sse9I	AATT	5 cut(s)	70, 110, 269, 379, 538
SsiI	CCGC	1 cut(s)	425
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	4 cut(s)	61, 147, 157, 487
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	339
TasI	AATT	5 cut(s)	70, 110, 269, 379, 538
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	4, 364
Tru1I	TTAA	4 cut(s)	273, 315, 378, 537
Tru9I	TTAA	4 cut(s)	273, 315, 378, 537
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	126, 282
Tsp45I	GTSAC	1 cut(s)	460
TspDTI	ATGAA	2 cut(s)	17, 516
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	478
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	110, 269
XceI	RCATGY	3 cut(s)	190, 405, 441
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.