Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

37427478 .. 37432187

Gene Structure 4710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1260300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCTTGTTGCTCTTTCTTCTTTCGAAAGAAGGAAGCTTCTTTTGTTAACCGGCCTGTTGAAATCGACGAAGTGGTTTCAGGCGTTTTGAATGTGAAGCAGTACGGTTATAGGGAACTGCAAATTGCCACTGAGAACTTCAGTAAAGAAAATAAAATTGGTCAGGGAGGCTTTGGCTCCGTGTACAAGGGAACACTCAAGGATGGGACTTTGGTGGCTATAAAAGTCTTGTCAGCAGAGTCTAATCAAGGGTTGCGGGAATTTTTAACAGAAATCGAGGTGATTGCGACCGTTGAACATGATAACTTAGTTAAGCTATATGGTTGCTGTGCAGAAGGAGATCACAGAATATTGGTTTATGGCTATCTTGAGAATAATAGCCTAGCACAAACACTGCTTGGGAAAGGCTACAGCGGTATCCAATTTACTTGGCTTACAAGGTGTAAAATTTGCATTGGTGTTGCAAGGGGGCTCGCTTATCTCCACGAGGAGGTTAGCCCTCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTCCTTGATAAAGACCTCTCACCAAAAATTTCAGATTTTGGTCTTGCAAAGTTTATCGCCCACCACTTGACCCATGTTAGCACTCGTGTTGCTGGAACAACAGGTTACTTGGCGCCTGAGTATGCCATACGAGGTCAAGTAACAAGGAAAGCAGACATCTACAGTTTTGGTGTTTTACTGTTGGAAATTGTTTGTGGGAGGTCTAACACTAACAGACATTTACCACCCCAAGAACAATATCTTCTTGCACGGGCATGGGAACACCATGAGAAGGGGCAGCTGGTGGGATTAGTAGACACATCTTTGAATGGAAATTTCGACGTTGAGGAGGCTTGCAGATTCCTAAAGGTTGGCCTTCTCTGCACTCAAGACATGCCTAAGCTCCGACCATCCATGTCTACCGTTGTTCAAATGCTGACAGGTGCATTAGATGTGAAGGAGGGGAAGATATCCAAACCAGGGCTGCTTTCTGAATTTATGGAGCATAGAGAAGGTGGGAGAGATAAGGCCAACAAAAGACATCCATCTCACACGATATTCGCCTCAGGGAAGTTTATCAATTCATCTTCTTCATCAGAACCCGCCCCCACTTCATTTGCTACTATGACCTTCAATTCTATATATGACCGAAGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

43.38

Weight (kDa)

8.27

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	47 - 316	8.3e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 316	5e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	2 cut(s)	831, 935
AciI	CCGC	3 cut(s)	256, 414, 1119
AcsI	RAATTY	5 cut(s)	260, 447, 564, 850, 1010
AcuI	CTGAAG	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	650
AfaI	GTAC	2 cut(s)	104, 185
AfiI	CCNNNNNNNGG	3 cut(s)	490, 808, 996
AgsI	TTSAA	6 cut(s)	62, 91, 296, 844, 947, 1150
AjnI	CCWGG	1 cut(s)	994
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	4 cut(s)	38, 316, 817, 919
AluI	AGCT	4 cut(s)	38, 316, 817, 919
Alw26I	GTCTC	1 cut(s)	510
AoxI	GGCC	3 cut(s)	53, 889, 1044
ApeKI	GCWGC	2 cut(s)	814, 1000
ApoI	RAATTY	5 cut(s)	260, 447, 564, 850, 1010
AspLEI	GCGC	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	292, 549
AsuII	TTCGAA	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	1081
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	2 cut(s)	485, 621
BbvI	GCAGC	2 cut(s)	826, 987
BccI	CCATC	3 cut(s)	197, 934, 1069
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	996
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	2 cut(s)	409, 697
BfoI	RGCGCY	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	2 cut(s)	815, 1001
BlsI	GCNGC	2 cut(s)	816, 1002
Bme1390I	CCNGG	1 cut(s)	996
BmiI	GGNNCC	2 cut(s)	178, 651
BmrFI	CCNGG	1 cut(s)	996
Bpu10I	CCTNAGC	1 cut(s)	915
Bpu14I	TTCGAA	1 cut(s)	25
BpuEI	CTTGAG	3 cut(s)	182, 389, 888
BsaHI	GRCGYC	1 cut(s)	650
BsaJI	CCNNGG	1 cut(s)	995
Bsc4I	CCNNNNNNNGG	3 cut(s)	490, 808, 996
Bse118I	RCCGGY	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	1081
BseBI	CCWGG	1 cut(s)	996
BseDI	CCNNGG	1 cut(s)	995
BseGI	GGATG	3 cut(s)	208, 926, 1057
BseLI	CCNNNNNNNGG	3 cut(s)	490, 808, 996
BseMII	CTCAG	3 cut(s)	123, 645, 1095
BseRI	GAGGAG	2 cut(s)	503, 878
BseXI	GCAGC	2 cut(s)	826, 987
BsgI	GTGCAG	2 cut(s)	351, 883
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	55, 891, 1046
BshNI	GGYRCC	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	490, 808, 996
BsmAI	GTCTC	1 cut(s)	510
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	55, 891, 1046
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	256, 414, 1119
BspANI	GGCC	3 cut(s)	55, 891, 1046
BspCNI	CTCAG	3 cut(s)	124, 646, 1094
BspLI	GGNNCC	2 cut(s)	178, 651
BspT104I	TTCGAA	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	995
BssMI	GATC	1 cut(s)	340
BssNI	GRCGYC	1 cut(s)	650
BssSI	CACGAG	2 cut(s)	485, 621
Bst2BI	CACGAG	2 cut(s)	485, 621
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	5 cut(s)	107, 292, 701, 717, 940
BstACI	GRCGYC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	474, 529, 871
BstDEI	CTNAG	5 cut(s)	132, 307, 654, 915, 1081
BstF5I	GGATG	3 cut(s)	208, 926, 1057
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	1 cut(s)	340
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	1 cut(s)	897
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	994
BstSFI	CTRYAG	2 cut(s)	409, 697
BstV1I	GCAGC	2 cut(s)	826, 987
Bsu36I	CCTNAGG	1 cut(s)	1081
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	55, 891, 1046
BtsCI	GGATG	3 cut(s)	208, 926, 1057
BtsI	GCAGTG	1 cut(s)	392
BtsIMutI	CAGTG	2 cut(s)	129, 392
Cac8I	GCNNGC	3 cut(s)	474, 529, 871
CfoI	GCGC	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	103, 184
CspCI	CAANNNNNGTGG	2 cut(s)	1114, 1149
CviAII	CATG	6 cut(s)	299, 611, 792, 803, 910, 931
CviQI	GTAC	2 cut(s)	103, 184
DdeI	CTNAG	5 cut(s)	132, 307, 654, 915, 1081
DinI	GGCGCC	1 cut(s)	651
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	987
Eco57I	CTGAAG	1 cut(s)	124
Eco81I	CCTNAGG	1 cut(s)	1081
EcoRII	CCWGG	1 cut(s)	994
EcoRV	GATATC	1 cut(s)	987
EcoT38I	GRGCYC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	651
EheI	GGCGCC	1 cut(s)	651
FaeI	CATG	6 cut(s)	302, 614, 795, 806, 913, 934
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	6 cut(s)	298, 610, 791, 802, 909, 930
FauI	CCCGC	2 cut(s)	249, 1126
FblI	GTMKAC	2 cut(s)	831, 935
Fnu4HI	GCNGC	2 cut(s)	815, 1001
FokI	GGATG	3 cut(s)	215, 913, 1044
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	815, 1001
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	2 cut(s)	815, 1001
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	3 cut(s)	55, 891, 1046
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	1 cut(s)	652
Hin1I	GRCGYC	1 cut(s)	650
Hin1II	CATG	6 cut(s)	302, 614, 795, 806, 913, 934
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	239, 876
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	292, 549
Hpy166II	GTNNAC	4 cut(s)	49, 184, 832, 936
Hpy188I	TCNGA	4 cut(s)	571, 923, 1009, 1114
Hpy188III	TCNNGA	2 cut(s)	368, 905
Hpy8I	GTNNAC	4 cut(s)	49, 184, 832, 936
Hpy99I	CGWCG	2 cut(s)	71, 860
HpyAV	CCTTC	7 cut(s)	25, 329, 802, 902, 967, 1022, 1156
HpyCH4III	ACNGT	5 cut(s)	107, 292, 701, 717, 940
HpyCH4IV	ACGT	1 cut(s)	858
HpyCH4V	TGCA	9 cut(s)	121, 332, 453, 464, 584, 785, 873, 900, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	897
HpyF3I	CTNAG	5 cut(s)	132, 307, 654, 915, 1081
HpySE526I	ACGT	1 cut(s)	858
Hsp92I	GRCGYC	1 cut(s)	650
Hsp92II	CATG	6 cut(s)	302, 614, 795, 806, 913, 934
HspAI	GCGC	1 cut(s)	650
KasI	GGCGCC	1 cut(s)	649
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	340
LmnI	GCTCC	3 cut(s)	182, 924, 1018
Lsp1109I	GCAGC	2 cut(s)	826, 987
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	858
MaeIII	GTNAC	2 cut(s)	641, 676
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	5 cut(s)	10, 770, 994, 1095, 1098
MhlI	GDGCHC	1 cut(s)	474
Mly113I	GGCGCC	1 cut(s)	650
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	699, 946
MseI	TTAA	4 cut(s)	48, 266, 312, 522
MslI	CAYNNNNRTG	1 cut(s)	790
MspA1I	CMGCKG	2 cut(s)	414, 817
MspI	CCGG	1 cut(s)	52
MspR9I	CCNGG	1 cut(s)	996
MvaI	CCWGG	1 cut(s)	996
MwoI	GCNNNNNNNGC	1 cut(s)	897
NarI	GGCGCC	1 cut(s)	650
NdeII	GATC	1 cut(s)	340
NlaIII	CATG	6 cut(s)	302, 614, 795, 806, 913, 934
NlaIV	GGNNCC	2 cut(s)	178, 651
NspI	RCATGY	1 cut(s)	913
NspV	TTCGAA	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	2 cut(s)	816, 1002
PleI	GAGTC	1 cut(s)	247
PluTI	GGCGCC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	2 cut(s)	178, 651
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	104, 185
RsaNI	GTAC	2 cut(s)	103, 184
RseI	CAYNNNNRTG	1 cut(s)	790
SaqAI	TTAA	4 cut(s)	48, 266, 312, 522
SatI	GCNGC	2 cut(s)	815, 1001
Sau3AI	GATC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	996
SduI	GDGCHC	1 cut(s)	474
SfcI	CTRYAG	2 cut(s)	409, 697
SfoI	GGCGCC	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	790
SmlI	CTYRAG	3 cut(s)	197, 368, 903
SmoI	CTYRAG	3 cut(s)	197, 368, 903
SsiI	CCGC	3 cut(s)	256, 414, 1119
SspDI	GGCGCC	1 cut(s)	649
SspI	AATATT	2 cut(s)	351, 535
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	994
TaaI	ACNGT	5 cut(s)	107, 292, 701, 717, 940
TaiI	ACGT	1 cut(s)	861
TaqI	TCGA	4 cut(s)	25, 66, 276, 855
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	4 cut(s)	48, 266, 312, 522
Tru9I	TTAA	4 cut(s)	48, 266, 312, 522
TscAI	CASTG	2 cut(s)	136, 399
TseI	GCWGC	2 cut(s)	814, 1000
TspDTI	ATGAA	3 cut(s)	1089, 1098, 1119
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	2 cut(s)	136, 399
XapI	RAATTY	5 cut(s)	260, 447, 564, 850, 1010
XceI	RCATGY	1 cut(s)	913
XmiI	GTMKAC	2 cut(s)	831, 935
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.