Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

5697216 .. 5699870

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGTTGCTCCTGGTTATCGTGTCACAGGAGAGAAGCTACAGAAGTTGATGGAGAAATCGCAGCGATAGACAATGTAAAGATATACAAATATAGAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAAGGAGGGTTTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAACTCGCGGCTATCAAAGTCCTCTCGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAATACAGCATGAGAATTTGGTTAAGTTGTATGGATGCTGCGTGGAGGGGAATCATAGGATTCTTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACACTCGTAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTAAAGGTCTTGCCTTTCTTCATGAGGAAGTACGCCCACACATAATTCACAGAGATATCAAAGCAAGCAACATTCTACTTGACAAATATCTATCCCCCAAGATCTCTGATTTTGGACTTGCTAGACTTATGCCACCTAACATGACTCATGTTAGCACTCGTGTCGCGGGTACAATTGGTTATTTAGCACCAGAGTATGCGGTTAGGGGACAGTTGACGCGTAAAGCTGATATATACAGCTTTGGAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACTGAGTATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTCGTGGATCTTGTTGATTCAGGGTTAAATGGAGTGTTTGACGCAGAGGAAGCTTGTCGGTACCTAAAAATTGGTCTTTTGTGCACACAAGACAGTCCCAAGCTAAGACCAAGTATGTCCACCGTAGTGAGGTTGTTAACAGGGGAGAAGGATATAGACTACAAGAAAATAAGCAGACCGGGTTTGATTTCTGATTTCATGGATTTGAAAGTGAGAGGACCTGTGGCGACGAAGACAGAGCAAGTGAACAGACAAAACTACACAAACCCTTCTTCTTCGTCTAATGGCTCATCTAGAGATCACTCAAATGCTTACTCATCAGGGGCTTCATCAGCTAATGCTGGTAATACATTCAGCAGTACCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0033158 GO:0033160 GO:0036211 GO:0042221 GO:0042306 GO:0042307 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0048518 GO:0050789 GO:0050826 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051704 GO:0051707 GO:0060341 GO:0065007 GO:0070201 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0140096 GO:1900180 GO:1900182 GO:1901564 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.29

Weight (kDa)

8.02

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	42 - 246	1.3e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	43 - 313	2e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	864
AccB1I	GGYRCC	1 cut(s)	864
AccBSI	CCGCTC	1 cut(s)	796
AccII	CGCG	3 cut(s)	197, 617, 670
AciI	CCGC	4 cut(s)	197, 617, 650, 796
AclWI	GGATC	1 cut(s)	819
AcsI	RAATTY	2 cut(s)	242, 286
AfaI	GTAC	5 cut(s)	167, 483, 622, 866, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	706, 933
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	1 cut(s)	1012
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	4 cut(s)	123, 138, 155, 170
AleI	CACNNNNGTG	1 cut(s)	929
AluBI	AGCT	9 cut(s)	38, 383, 677, 690, 779, 805, 857, 907, 1139
AluI	AGCT	9 cut(s)	38, 383, 677, 690, 779, 805, 857, 907, 1139
Alw21I	GWGCWC	2 cut(s)	807, 890
Alw44I	GTGCAC	1 cut(s)	886
AlwI	GGATC	1 cut(s)	819
AoxI	GGCC	2 cut(s)	108, 429
ApaLI	GTGCAC	1 cut(s)	886
ApeKI	GCWGC	2 cut(s)	62, 309
ApoI	RAATTY	2 cut(s)	242, 286
Asp718I	GGTACC	1 cut(s)	864
AspS9I	GGNCC	2 cut(s)	429, 1022
AsuC2I	CCSGG	1 cut(s)	984
AvaII	GGWCC	1 cut(s)	1022
BaeGI	GKGCMC	1 cut(s)	890
BanI	GGYRCC	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	807
BauI	CACGAG	2 cut(s)	609, 806
BbsI	GAAGAC	1 cut(s)	1043
Bbv12I	GWGCWC	2 cut(s)	807, 890
BbvI	GCAGC	2 cut(s)	74, 296
BccI	CCATC	3 cut(s)	44, 179, 700
BcgI	CGANNNNNNTGC	2 cut(s)	595, 629
BciT130I	CCWGG	1 cut(s)	13
BciVI	GTATCC	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	984
BfaI	CTAG	3 cut(s)	380, 573, 1098
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	399
BglII	AGATCT	1 cut(s)	552
BisI	GCNGC	3 cut(s)	63, 198, 310
BlsI	GCNGC	3 cut(s)	64, 199, 311
Bme1390I	CCNGG	2 cut(s)	13, 984
Bme18I	GGWCC	1 cut(s)	1022
BmgT120I	GGNCC	2 cut(s)	429, 1022
BmiI	GGNNCC	1 cut(s)	866
BmrFI	CCNGG	2 cut(s)	13, 984
BmsI	GCATC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	1043
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	984
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 933
BseBI	CCWGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	706, 933
BseMII	CTCAG	3 cut(s)	210, 243, 744
BseSI	GKGCMC	1 cut(s)	890
BseXI	GCAGC	2 cut(s)	74, 296
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	3 cut(s)	197, 617, 670
BshFI	GGCC	2 cut(s)	110, 431
BshNI	GGYRCC	1 cut(s)	864
BsiHKAI	GWGCWC	2 cut(s)	807, 890
BsiSI	CCGG	1 cut(s)	983
BslFI	GGGAC	2 cut(s)	672, 885
BslI	CCNNNNNNNGG	2 cut(s)	706, 933
BsmFI	GGGAC	2 cut(s)	672, 885
BsnI	GGCC	2 cut(s)	110, 431
Bsp1286I	GDGCHC	2 cut(s)	807, 890
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	255, 552, 811, 1102
BspACI	CCGC	4 cut(s)	197, 617, 650, 796
BspANI	GGCC	2 cut(s)	110, 431
BspCNI	CTCAG	3 cut(s)	211, 244, 745
BspFNI	CGCG	3 cut(s)	197, 617, 670
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	866
BspPI	GGATC	1 cut(s)	819
BspT107I	GGYRCC	1 cut(s)	864
BsrBI	CCGCTC	1 cut(s)	796
BsrGI	TGTACA	1 cut(s)	165
BssMI	GATC	4 cut(s)	255, 552, 811, 1102
BssSI	CACGAG	2 cut(s)	609, 806
Bst2BI	CACGAG	2 cut(s)	609, 806
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	4 cut(s)	411, 663, 899, 928
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	517
BstDEI	CTNAG	4 cut(s)	219, 252, 753, 908
BstF5I	GGATG	1 cut(s)	311
BstFNI	CGCG	3 cut(s)	197, 617, 670
BstKTI	GATC	4 cut(s)	258, 555, 814, 1105
BstMBI	GATC	4 cut(s)	255, 552, 811, 1102
BstMWI	GCNNNNNNNGC	3 cut(s)	802, 854, 1136
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	11, 982
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	890
BstUI	CGCG	3 cut(s)	197, 617, 670
BstV1I	GCAGC	2 cut(s)	74, 296
BstV2I	GAAGAC	1 cut(s)	1043
BstX2I	RGATCY	2 cut(s)	552, 811
BstYI	RGATCY	2 cut(s)	552, 811
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	110, 431
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	4 cut(s)	111, 130, 724, 750
Cac8I	GCNNGC	1 cut(s)	517
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	429, 1022
CseI	GACGC	3 cut(s)	382, 676, 854
Csp6I	GTAC	5 cut(s)	166, 482, 621, 865, 1164
CviAII	CATG	5 cut(s)	281, 473, 592, 599, 1003
CviQI	GTAC	5 cut(s)	166, 482, 621, 865, 1164
DdeI	CTNAG	4 cut(s)	219, 252, 753, 908
DpnI	GATC	4 cut(s)	257, 554, 813, 1104
DpnII	GATC	4 cut(s)	255, 552, 811, 1102
Ecl136II	GAGCTC	1 cut(s)	805
Eco24I	GRGCYC	1 cut(s)	807
Eco32I	GATATC	2 cut(s)	267, 508
Eco47I	GGWCC	1 cut(s)	1022
Eco53kI	GAGCTC	1 cut(s)	805
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	1022
EcoRI	GAATTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	11
EcoRV	GATATC	2 cut(s)	267, 508
EcoT38I	GRGCYC	1 cut(s)	807
FaeI	CATG	5 cut(s)	284, 476, 595, 602, 1006
FaqI	GGGAC	2 cut(s)	672, 885
FatI	CATG	5 cut(s)	280, 472, 591, 598, 1002
FauI	CCCGC	1 cut(s)	610
Fnu4HI	GCNGC	3 cut(s)	63, 198, 310
FokI	GGATG	1 cut(s)	318
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	3 cut(s)	63, 198, 310
FspBI	CTAG	3 cut(s)	380, 573, 1098
GluI	GCNGC	3 cut(s)	63, 198, 310
GsaI	CCCAGC	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	110, 431
HapII	CCGG	1 cut(s)	983
HgaI	GACGC	3 cut(s)	382, 676, 854
Hin1II	CATG	5 cut(s)	284, 476, 595, 602, 1006
HincII	GTYRAC	2 cut(s)	666, 942
HindII	GTYRAC	2 cut(s)	666, 942
HindIII	AAGCTT	1 cut(s)	855
HinfI	GANTC	6 cut(s)	221, 322, 331, 595, 696, 821
HpaI	GTTAAC	1 cut(s)	942
HpaII	CCGG	1 cut(s)	983
Hpy166II	GTNNAC	7 cut(s)	166, 340, 666, 888, 924, 942, 1051
Hpy188I	TCNGA	4 cut(s)	271, 559, 705, 997
Hpy188III	TCNNGA	6 cut(s)	225, 247, 365, 473, 770, 1098
Hpy8I	GTNNAC	7 cut(s)	166, 340, 666, 888, 924, 942, 1051
Hpy99I	CGWCG	1 cut(s)	1036
HpyAV	CCTTC	4 cut(s)	140, 710, 946, 1083
HpyCH4III	ACNGT	4 cut(s)	411, 663, 899, 928
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	888
HpyF10VI	GCNNNNNNNGC	3 cut(s)	802, 854, 1136
HpyF3I	CTNAG	4 cut(s)	219, 252, 753, 908
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	5 cut(s)	284, 476, 595, 602, 1006
KpnI	GGTACC	1 cut(s)	868
KspAI	GTTAAC	1 cut(s)	942
Kzo9I	GATC	4 cut(s)	255, 552, 811, 1102
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	2 cut(s)	74, 296
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	3 cut(s)	380, 573, 1098
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	23, 728
MalI	GATC	4 cut(s)	257, 554, 813, 1104
MbiI	CCGCTC	1 cut(s)	796
MboI	GATC	4 cut(s)	255, 552, 811, 1102
MboII	GAAGA	6 cut(s)	461, 735, 758, 1048, 1068, 1071
MfeI	CAATTG	1 cut(s)	624
MflI	RGATCY	2 cut(s)	552, 811
MhlI	GDGCHC	2 cut(s)	807, 890
MluCI	AATT	7 cut(s)	138, 242, 286, 343, 495, 624, 873
MluI	ACGCGT	1 cut(s)	668
MlyI	GAGTC	3 cut(s)	230, 589, 705
MnlI	CCTC	7 cut(s)	143, 221, 310, 469, 844, 927, 1013
MseI	TTAA	4 cut(s)	180, 294, 830, 941
MslI	CAYNNNNRTG	2 cut(s)	929, 1110
MspI	CCGG	1 cut(s)	983
MspR9I	CCNGG	2 cut(s)	13, 984
MunI	CAATTG	1 cut(s)	624
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	3 cut(s)	197, 617, 670
MwoI	GCNNNNNNNGC	3 cut(s)	802, 854, 1136
NciI	CCSGG	1 cut(s)	984
NdeII	GATC	4 cut(s)	255, 552, 811, 1102
NlaIII	CATG	5 cut(s)	284, 476, 595, 602, 1006
NlaIV	GGNNCC	1 cut(s)	866
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	929
PagI	TCATGA	1 cut(s)	472
PfeI	GAWTC	3 cut(s)	322, 331, 821
PkrI	GCNGC	3 cut(s)	64, 199, 311
PleI	GAGTC	3 cut(s)	229, 589, 704
PpsI	GAGTC	3 cut(s)	229, 589, 704
PpuMI	RGGWCCY	1 cut(s)	1022
Psp124BI	GAGCTC	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	866
PspPI	GGNCC	2 cut(s)	429, 1022
PspPPI	RGGWCCY	1 cut(s)	1022
PsuI	RGATCY	2 cut(s)	552, 811
RsaI	GTAC	5 cut(s)	167, 483, 622, 866, 1165
RsaNI	GTAC	5 cut(s)	166, 482, 621, 865, 1164
RseI	CAYNNNNRTG	2 cut(s)	929, 1110
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	4 cut(s)	180, 294, 830, 941
SatI	GCNGC	3 cut(s)	63, 198, 310
Sau3AI	GATC	4 cut(s)	255, 552, 811, 1102
Sau96I	GGNCC	2 cut(s)	429, 1022
SchI	GAGTC	3 cut(s)	230, 589, 705
ScrFI	CCNGG	2 cut(s)	13, 984
SduI	GDGCHC	2 cut(s)	807, 890
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	1022
SmiMI	CAYNNNNRTG	2 cut(s)	929, 1110
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	7 cut(s)	138, 242, 286, 343, 495, 624, 873
SsiI	CCGC	4 cut(s)	197, 617, 650, 796
SspI	AATATT	1 cut(s)	436
SspMI	CTAG	3 cut(s)	380, 573, 1098
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	2 cut(s)	11, 982
TaaI	ACNGT	4 cut(s)	411, 663, 899, 928
TaiI	ACGT	1 cut(s)	106
TasI	AATT	7 cut(s)	138, 242, 286, 343, 495, 624, 873
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	3 cut(s)	322, 331, 821
Tru1I	TTAA	4 cut(s)	180, 294, 830, 941
Tru9I	TTAA	4 cut(s)	180, 294, 830, 941
TscAI	CASTG	4 cut(s)	118, 130, 724, 757
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	2 cut(s)	62, 309
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	3 cut(s)	461, 991, 1122
TspRI	CASTG	4 cut(s)	118, 130, 724, 757
VneI	GTGCAC	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	242, 286
XbaI	TCTAGA	1 cut(s)	1097
XspI	CTAG	3 cut(s)	380, 573, 1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.