Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

25932340 .. 25937528

Gene Structure 5189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCTTGTTTCTCTTGCTTGTTCAGCCAGAAGCCAGCTTCTTCAGTTAAACGGACTGTTGACATTGATGAAGTTGTTTCAGGTATTTCAAATCTCAAACTGTACAGTTACAAGGAACTGCAAAATGCCACTGAAAATTTCAGTGAAGACAATAAAATTGGGCAGGGAGGCTTTGGCTCCGTATACAAGGGAACACTCAAGAATGGCTCTGTGGCAGCAATAAAGGTGTTGTCAGGAGATTCTAGGCAAGGGTCGCGGGAATTTTTGACAGAGATTGAGGTGATTGCAAGTGTTGATCATGAGAACCTAGTTAAGCTATACGGTTGCTGTGCAGAAGGAAATCATAGGATATTGGTTTATGGCTATCTCGAGAATAATAGCCTTTCACAAACTCTTCTTGATGGAGGCCAAACTGGCATCCAATTTAGTTGGCAAACAAGGTGTAAAATCTGCATTGGTATTGCAAGGGGGCTCGCTTACCTCCATGAGGATGTTCAACCCCATATTATTCACAGAGACATTAAAGCAAGCAATATTCTTCTTGATAAAGACTTTTCGCCCAAAATTTCAGATTTTGGTCTTGCAAAGTTGATCGCACCCAACTTGACCCATGTTAGTACTCGTGTCGCTGGAACAGCAGGTTACATAGCCCCTGAATATGCCATACGAGGTCAAGTGACAAGGAAAGCGGATATCTATAGTTTTGGTGTTTTAGTCTTGGAAATTGTTAGTGGCAGGTGCAACACAAACAGACGTTTACCATCCAAAGAACAGTATCTTCTTGAAAGGGTATGGGAACTACATGGGAGGGGTCAGCTGGTGGAGTTGGTCGATACATCATTAAATGAAGATTTGAATGTTGAGGAGGCTTGCAGATTCATGAAGATCGGTCTTCTTTGCACCCAAGACAAGCCCAAGCTCCGACCATCCATGTCTACAGTTGTTAAGATGCTGACAGGTGAGATAGACGTGAATGACGAGAAGATAGACAAACCTGGAATGCTTTCTGAGTTCATGAATCAGAGAGATTTGGCTGTGTTAAACACTCATCTTACTCACTATCGCCTTCTGGGAAGGTTCTCAATTCTTCATCTTCCTCTGAACAAATCACCACTTCATTTGCTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

376

Amino Acids

41.86

Weight (kDa)

7.6

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 316	1.6e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 318	1.9e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	726
Acc36I	ACCTGC	2 cut(s)	629, 726
AccI	GTMKAC	2 cut(s)	183, 935
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	256, 689
AcsI	RAATTY	3 cut(s)	136, 260, 564
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	104, 619
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	4 cut(s)	90, 497, 785, 856
AjiI	CACGTC	1 cut(s)	970
AjnI	CCWGG	1 cut(s)	994
AluBI	AGCT	4 cut(s)	38, 316, 817, 919
AluI	AGCT	4 cut(s)	38, 316, 817, 919
Alw26I	GTCTC	1 cut(s)	510
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	3 cut(s)	136, 260, 564
Asp700I	GAANNNNTTC	1 cut(s)	1003
AsuHPI	GGTGA	3 cut(s)	292, 971, 1101
AvaI	CYCGRG	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	2 cut(s)	153, 884
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	3 cut(s)	395, 769, 934
BciT130I	CCWGG	1 cut(s)	996
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	2 cut(s)	243, 308
BfmI	CTRYAG	2 cut(s)	697, 936
BfuAI	ACCTGC	2 cut(s)	629, 726
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	996
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	970
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	996
BmsI	GCATC	2 cut(s)	426, 939
BpiI	GAAGAC	2 cut(s)	153, 884
BpuEI	CTTGAG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	996
BseGI	GGATG	4 cut(s)	417, 496, 761, 926
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	999
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	295, 591, 885
BspACI	CCGC	2 cut(s)	256, 689
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	1000
BspFNI	CGCG	1 cut(s)	256
BspHI	TCATGA	3 cut(s)	298, 879, 1014
BspLI	GGNNCC	1 cut(s)	178
BspMI	ACCTGC	2 cut(s)	629, 726
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	3 cut(s)	295, 591, 885
BssNAI	GTATAC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	6 cut(s)	58, 102, 107, 323, 774, 940
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	36, 474, 529, 871
BstDEI	CTNAG	1 cut(s)	1008
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	4 cut(s)	417, 496, 761, 926
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	298, 594, 888
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	3 cut(s)	295, 591, 885
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 253, 414, 635
BstNI	CCWGG	1 cut(s)	996
BstSCI	CCNGG	1 cut(s)	994
BstSFI	CTRYAG	2 cut(s)	697, 936
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	227
BstV2I	GAAGAC	2 cut(s)	153, 884
BstZ17I	GTATAC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	970
BtsCI	GGATG	4 cut(s)	417, 496, 761, 926
BtsIMutI	CAGTG	2 cut(s)	129, 148
BveI	ACCTGC	2 cut(s)	629, 726
Cac8I	GCNNGC	4 cut(s)	36, 474, 529, 871
CciI	TCATGA	3 cut(s)	298, 879, 1014
Csp6I	GTAC	2 cut(s)	103, 618
CspCI	CAANNNNNGTGG	1 cut(s)	1101
CviAII	CATG	8 cut(s)	299, 485, 611, 803, 880, 931, 1015, 1128
CviQI	GTAC	2 cut(s)	103, 618
DdeI	CTNAG	1 cut(s)	1008
DpnI	GATC	3 cut(s)	297, 593, 887
DpnII	GATC	3 cut(s)	295, 591, 885
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	994
EcoRV	GATATC	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	8 cut(s)	302, 488, 614, 806, 883, 934, 1018, 1131
FatI	CATG	8 cut(s)	298, 484, 610, 802, 879, 930, 1014, 1127
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	183, 935
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	4 cut(s)	404, 503, 748, 913
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	243, 308
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	408
Hin1II	CATG	8 cut(s)	302, 488, 614, 806, 883, 934, 1018, 1131
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	239, 876, 1018
HphI	GGTGA	3 cut(s)	292, 971, 1101
Hpy166II	GTNNAC	4 cut(s)	61, 184, 758, 936
Hpy188I	TCNGA	5 cut(s)	571, 923, 1009, 1023, 1101
Hpy8I	GTNNAC	4 cut(s)	61, 184, 758, 936
HpyAV	CCTTC	3 cut(s)	329, 1068, 1076
HpyCH4III	ACNGT	6 cut(s)	58, 102, 107, 323, 774, 940
HpyCH4IV	ACGT	2 cut(s)	754, 969
HpyCH4V	TGCA	9 cut(s)	121, 287, 332, 453, 464, 584, 741, 873, 900
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 253, 414, 635
HpyF3I	CTNAG	1 cut(s)	1008
HpySE526I	ACGT	2 cut(s)	754, 969
Hsp92II	CATG	8 cut(s)	302, 488, 614, 806, 883, 934, 1018, 1131
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 591, 885
LmnI	GCTCC	2 cut(s)	182, 924
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	2 cut(s)	426, 939
MaeI	CTAG	2 cut(s)	243, 308
MaeII	ACGT	2 cut(s)	754, 969
MaeIII	GTNAC	3 cut(s)	107, 641, 676
MalI	GATC	3 cut(s)	297, 593, 887
MboI	GATC	3 cut(s)	295, 591, 885
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	7 cut(s)	136, 156, 260, 422, 564, 723, 1083
MmeI	TCCRAC	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	1003
MseI	TTAA	6 cut(s)	48, 312, 522, 842, 945, 1040
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	817
MspR9I	CCNGG	1 cut(s)	996
Mva1269I	GAATGC	1 cut(s)	1005
MvaI	CCWGG	1 cut(s)	996
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	24, 253, 414, 635
NdeII	GATC	3 cut(s)	295, 591, 885
NlaIII	CATG	8 cut(s)	302, 488, 614, 806, 883, 934, 1018, 1131
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	3 cut(s)	298, 879, 1014
PaqCI	CACCTGC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	975
PctI	GAATGC	1 cut(s)	1005
PdmI	GAANNNNTTC	1 cut(s)	1003
PfeI	GAWTC	3 cut(s)	239, 876, 1018
PkrI	GCNGC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	104, 619
RsaNI	GTAC	2 cut(s)	103, 618
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	6 cut(s)	48, 312, 522, 842, 945, 1040
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	295, 591, 885
ScaI	AGTACT	1 cut(s)	619
ScrFI	CCNGG	1 cut(s)	996
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	2 cut(s)	426, 939
SfcI	CTRYAG	2 cut(s)	697, 936
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	197, 368
SmoI	CTYRAG	2 cut(s)	197, 368
Sse9I	AATT	7 cut(s)	136, 156, 260, 422, 564, 723, 1083
SsiI	CCGC	2 cut(s)	256, 689
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	243, 308
StyD4I	CCNGG	1 cut(s)	994
TaaI	ACNGT	6 cut(s)	58, 102, 107, 323, 774, 940
TaiI	ACGT	2 cut(s)	757, 972
TaqI	TCGA	2 cut(s)	369, 831
TaqII	GACCGA	1 cut(s)	878
TasI	AATT	7 cut(s)	136, 156, 260, 422, 564, 723, 1083
TatI	WGTACW	2 cut(s)	102, 617
TfiI	GAWTC	3 cut(s)	239, 876, 1018
Tru1I	TTAA	6 cut(s)	48, 312, 522, 842, 945, 1040
Tru9I	TTAA	6 cut(s)	48, 312, 522, 842, 945, 1040
TscAI	CASTG	2 cut(s)	136, 148
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	8 cut(s)	84, 861, 868, 896, 1003, 1031, 1079, 1106
TspGWI	ACGGA	2 cut(s)	67, 169
TspRI	CASTG	2 cut(s)	136, 148
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	3 cut(s)	136, 260, 564
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	183, 935
XmnI	GAANNNNTTC	1 cut(s)	1003
XspI	CTAG	2 cut(s)	243, 308
ZrmI	AGTACT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.