Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018148.1

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

18698 .. 21952

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018148.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgtcttgtttctcttgcttgttcagccagaagccagcttcttcagttaaacggactgttgacattgatgaagttgtttcaggtatttcaaatctcaaactgtacagttacaaggaactgcaaaatgccactgaaaatttcagtgaagacaataaaattgggcagggaggctttggctccgtatacaagggaacactcaaggatggctctgtggcagcaataaaggtgttgtcaggagattctaggcaagggtcgcgggaatttttgacagagattgaggtgattgcaagtgttgatcatgagaacctagttaagctatacggttgctgtgcagaaggaaatcataggatattggtttatggctatctcgagaataatagcctttcacaaactcttcttgatggaggccaaactggcatccaatttagttggcaaacaaggtgtaaaatctgcattggtattgcaagggggctcgcttacctccatgaggatgttcaaccccatattattcacagagacattaaagcaagcaatattcttcttgataaagacttttcgcccaaaatttcagattttggtcttgcaaagttgatcgcacccaacttgacccatgttagtactcgtgtcgctggaacagcaggttacatagcccctgaatatgccatacgaggtcaagtgacaaggaaagcggatatctatagttttggtgttttagtcttggaaattgttagtggcaggtgcaacacaaacagacgtttaccatccaaagaacagtatcttcttgaaaggctggtggagttggtcgatacatcattaaatgaagatttgaatgttgaggaggcttgcagattcatgaagatcggtcttctttgcacccaagacaagcccaagctccgaccatccatgtctacagttgttcagatgctgacaggtgagatagacgtgaatgacgagaagatagacaaacctggaatgctttctgagttcatgaatcagagagatttggctgatgttaaacactcatcttactcactatcgccttctgggaaggttctcaattcttcatcttcctctgaacaaatcaccacttcatttgctaccatgaccttcaattctatatatgaccgaagcaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

41.76

Weight (kDa)

6.03

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	726
Acc36I	ACCTGC	2 cut(s)	629, 726
AccI	GTMKAC	2 cut(s)	183, 908
AccII	CGCG	1 cut(s)	256
AciI	CCGC	2 cut(s)	256, 689
AcsI	RAATTY	3 cut(s)	136, 260, 564
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	2 cut(s)	104, 619
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	5 cut(s)	90, 497, 785, 829, 1111
AjiI	CACGTC	1 cut(s)	943
AjnI	CCWGG	1 cut(s)	967
AluBI	AGCT	3 cut(s)	38, 316, 892
AluI	AGCT	3 cut(s)	38, 316, 892
Alw26I	GTCTC	1 cut(s)	510
AlwNI	CAGNNNCTG	1 cut(s)	925
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	3 cut(s)	136, 260, 564
Asp700I	GAANNNNTTC	1 cut(s)	976
AsuHPI	GGTGA	3 cut(s)	292, 944, 1075
AvaI	CYCGRG	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	474
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	2 cut(s)	153, 857
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	4 cut(s)	197, 395, 769, 907
BciT130I	CCWGG	1 cut(s)	969
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	2 cut(s)	243, 308
BfmI	CTRYAG	2 cut(s)	697, 909
BfuAI	ACCTGC	2 cut(s)	629, 726
BglI	GCCNNNNNGGC	1 cut(s)	414
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	969
BmeT110I	CYCGRG	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	943
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	2 cut(s)	426, 912
BpiI	GAAGAC	2 cut(s)	153, 857
BpuEI	CTTGAG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	969
BseGI	GGATG	5 cut(s)	208, 417, 496, 761, 899
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	972
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	1 cut(s)	851
BseXI	GCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	978
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	295, 591, 858
BspACI	CCGC	2 cut(s)	256, 689
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	973
BspFNI	CGCG	1 cut(s)	256
BspHI	TCATGA	3 cut(s)	298, 852, 987
BspLI	GGNNCC	1 cut(s)	178
BspMI	ACCTGC	2 cut(s)	629, 726
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	418
BssMI	GATC	3 cut(s)	295, 591, 858
BssNAI	GTATAC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	6 cut(s)	58, 102, 107, 323, 774, 913
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	4 cut(s)	36, 474, 529, 844
BstDEI	CTNAG	1 cut(s)	981
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	5 cut(s)	208, 417, 496, 761, 899
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	298, 594, 861
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	3 cut(s)	295, 591, 858
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 253, 414, 635
BstNI	CCWGG	1 cut(s)	969
BstSCI	CCNGG	1 cut(s)	967
BstSFI	CTRYAG	2 cut(s)	697, 909
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	227
BstV2I	GAAGAC	2 cut(s)	153, 857
BstZ17I	GTATAC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	943
BtsCI	GGATG	5 cut(s)	208, 417, 496, 761, 899
BtsIMutI	CAGTG	2 cut(s)	129, 148
BveI	ACCTGC	2 cut(s)	629, 726
Cac8I	GCNNGC	4 cut(s)	36, 474, 529, 844
CaiI	CAGNNNCTG	1 cut(s)	925
CciI	TCATGA	3 cut(s)	298, 852, 987
Csp6I	GTAC	2 cut(s)	103, 618
CspCI	CAANNNNNGTGG	2 cut(s)	1075, 1110
CviAII	CATG	7 cut(s)	299, 485, 611, 853, 904, 988, 1102
CviQI	GTAC	2 cut(s)	103, 618
DdeI	CTNAG	1 cut(s)	981
DpnI	GATC	3 cut(s)	297, 593, 860
DpnII	GATC	3 cut(s)	295, 591, 858
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	967
EcoRV	GATATC	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	474
FaeI	CATG	7 cut(s)	302, 488, 614, 856, 907, 991, 1105
FatI	CATG	7 cut(s)	298, 484, 610, 852, 903, 987, 1101
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	183, 908
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	5 cut(s)	215, 404, 503, 748, 886
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	243, 308
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	408
Hin1II	CATG	7 cut(s)	302, 488, 614, 856, 907, 991, 1105
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	239, 849, 991
HphI	GGTGA	3 cut(s)	292, 944, 1075
Hpy166II	GTNNAC	4 cut(s)	61, 184, 758, 909
Hpy188I	TCNGA	6 cut(s)	571, 896, 921, 982, 996, 1075
Hpy188III	TCNNGA	9 cut(s)	234, 299, 368, 370, 398, 542, 782, 853, 988
Hpy8I	GTNNAC	4 cut(s)	61, 184, 758, 909
HpyAV	CCTTC	4 cut(s)	329, 1042, 1050, 1117
HpyCH4III	ACNGT	6 cut(s)	58, 102, 107, 323, 774, 913
HpyCH4IV	ACGT	2 cut(s)	754, 942
HpyCH4V	TGCA	9 cut(s)	121, 287, 332, 453, 464, 584, 741, 846, 873
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 253, 414, 635
HpyF3I	CTNAG	1 cut(s)	981
HpySE526I	ACGT	2 cut(s)	754, 942
Hsp92II	CATG	7 cut(s)	302, 488, 614, 856, 907, 991, 1105
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 591, 858
LmnI	GCTCC	2 cut(s)	182, 897
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	2 cut(s)	426, 912
MaeI	CTAG	2 cut(s)	243, 308
MaeII	ACGT	2 cut(s)	754, 942
MaeIII	GTNAC	3 cut(s)	107, 641, 676
MalI	GATC	3 cut(s)	297, 593, 860
MboI	GATC	3 cut(s)	295, 591, 858
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	9 cut(s)	136, 156, 260, 422, 564, 723, 1057, 1111, 1132
MmeI	TCCRAC	1 cut(s)	919
MnlI	CCTC	9 cut(s)	161, 271, 398, 481, 491, 662, 829, 832, 1081
MroXI	GAANNNNTTC	1 cut(s)	976
MseI	TTAA	5 cut(s)	48, 312, 522, 815, 1014
MslI	CAYNNNNRTG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	969
Mva1269I	GAATGC	1 cut(s)	978
MvaI	CCWGG	1 cut(s)	969
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	24, 253, 414, 635
NdeII	GATC	3 cut(s)	295, 591, 858
NlaIII	CATG	7 cut(s)	302, 488, 614, 856, 907, 991, 1105
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	368
PagI	TCATGA	3 cut(s)	298, 852, 987
PaqCI	CACCTGC	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	948
PctI	GAATGC	1 cut(s)	978
PdmI	GAANNNNTTC	1 cut(s)	976
PfeI	GAWTC	3 cut(s)	239, 849, 991
PkrI	GCNGC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	967
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	1 cut(s)	178
PstNI	CAGNNNCTG	1 cut(s)	925
RsaI	GTAC	2 cut(s)	104, 619
RsaNI	GTAC	2 cut(s)	103, 618
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	5 cut(s)	48, 312, 522, 815, 1014
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	295, 591, 858
ScaI	AGTACT	1 cut(s)	619
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	2 cut(s)	426, 912
SfcI	CTRYAG	2 cut(s)	697, 909
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	197, 368
SmoI	CTYRAG	2 cut(s)	197, 368
Sse9I	AATT	9 cut(s)	136, 156, 260, 422, 564, 723, 1057, 1111, 1132
SsiI	CCGC	2 cut(s)	256, 689
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	2 cut(s)	243, 308
StyD4I	CCNGG	1 cut(s)	967
TaaI	ACNGT	6 cut(s)	58, 102, 107, 323, 774, 913
TaiI	ACGT	2 cut(s)	757, 945
TaqI	TCGA	2 cut(s)	369, 804
TaqII	GACCGA	1 cut(s)	851
TasI	AATT	9 cut(s)	136, 156, 260, 422, 564, 723, 1057, 1111, 1132
TatI	WGTACW	2 cut(s)	102, 617
TfiI	GAWTC	3 cut(s)	239, 849, 991
Tru1I	TTAA	5 cut(s)	48, 312, 522, 815, 1014
Tru9I	TTAA	5 cut(s)	48, 312, 522, 815, 1014
TscAI	CASTG	2 cut(s)	136, 148
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	8 cut(s)	84, 834, 841, 869, 976, 1004, 1053, 1080
TspGWI	ACGGA	2 cut(s)	67, 169
TspRI	CASTG	2 cut(s)	136, 148
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	3 cut(s)	136, 260, 564
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	183, 908
XmnI	GAANNNNTTC	1 cut(s)	976
XspI	CTAG	2 cut(s)	243, 308
ZrmI	AGTACT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.