Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

10123449 .. 10128374

Gene Structure 4926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGACTTGTTTAGCCTTCTTACTTGGTAGAAAGGACTCATCAAGAAAATTTGGTTTTAATGTTGATGATGAGCTTTCTGGCATTCATGATGTTAAACTATACACGTACAAAGAGTTGAAAATGGCGACAGAAGATTTTGATCTAGCCAACAAAATTGGCGAAGGTGGTTTTGGTTCTGTCTATAAGGGACGACTTAAAGATGGAAATTTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAAACAAGGGGTGAAGGAGTTTTTGACCGAGATAGATGTGATCTCAAAAATAGGGCATCCAAATCTAGTTAAGCTCTATGGCTGTTGTATAGAAGGAGACCAGAGAATCTTGGTCTACAACTACCTGGAGAATAATAGTCTTGCACAAACTCTTCTTGGTGGAGGTTACAGTAATATTCAGTTTAATTGGCGAACACGGCGTGGGATAGCTATCGGAATTGCATGTGGGCTTGCCTTCCTTCATGAGGATGTACGTCCACATATTATTCACAGAGATATCAAAGCAAGCAATATTCTCCTTGATAAAGACCTAATGCCTAAAATTTCAGATTTTGGCCTTGCAAAACTTATCCCAGCCAACGTGACTCATGTTAGCACACGTGTGGCAGGAACAATAGGCTATCTGGCACCAGAATACGCAATACGAGGGCAATTGACGAGGAGAGCAGATGTTTATAGTTTTGGGGTCCTCCTAGTGGAAATAGTCAGTGGGAGATGCAATACTAATTCACTACTACCCATTGAGGAACAGTATCTGCTTGAAAGGACATGGCATCTCTATGAACGCAGGGAGCTGGTTGGTCTGGTAGACACAGCATTGAACGGAGATTTTGATGCTGAGGAGGCTTGTAGATTCTTAAAGATTGGTCTTCTCTGCACACAAGACACTCCAAAGCTGAGACCATCCATGTCAACTGTGGTAAAGATGCTTAAAGGCCAGAAGGAAGTCGACGATACTAAGATAACAAAGCCAGGCTTGATATCTGATTTCATGGATCTCAAAATACGAGGCCAACCGAATAGTAAGAAGCCTAGCACAAAGACCTCTACTTCGTCCTACAATGGGTCCTCCGGTTCAGACAACCTGGACAATTCAAACCTGACGTCACAAACCTCAGCTGCCGCTACTTCCACCTTCATCTCAAACTTGTCCTTTGAAACCACAGCTCCAGCTTCTCCAACCTTCAGCTTCAAAACCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

44.89

Weight (kDa)

8.32

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 249	4.5e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 316	8.4e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1127
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	3 cut(s)	354, 828, 969
AciI	CCGC	1 cut(s)	1143
AclWI	GGATC	1 cut(s)	1023
AcsI	RAATTY	3 cut(s)	47, 205, 561
AcuI	CTGAAG	1 cut(s)	1189
AcvI	CACGTG	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	1124
AdeI	CACNNNGTG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	107, 492
AfiI	CCNNNNNNNGG	3 cut(s)	484, 715, 1083
AflIII	ACRYGT	3 cut(s)	102, 617, 619
AgsI	TTSAA	6 cut(s)	118, 782, 841, 1116, 1178, 1213
AjnI	CCWGG	3 cut(s)	363, 991, 1104
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AleI	CACNNNNGTG	1 cut(s)	620
Alw26I	GTCTC	2 cut(s)	330, 913
AlwI	GGATC	1 cut(s)	1023
AlwNI	CAGNNNCTG	1 cut(s)	775
AoxI	GGCC	3 cut(s)	574, 955, 1030
ApeKI	GCWGC	2 cut(s)	212, 1139
ApoI	RAATTY	3 cut(s)	47, 205, 561
ArsI	GACNNNNNNTTYG	4 cut(s)	1054, 1086, 1109, 1141
AspS9I	GGNCC	2 cut(s)	706, 1086
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	2 cut(s)	706, 1086
BanI	GGYRCC	1 cut(s)	646
BbrPI	CACGTG	1 cut(s)	620
BbsI	GAAGAC	1 cut(s)	881
BbvCI	CCTCAGC	2 cut(s)	858, 1135
BbvI	GCAGC	2 cut(s)	199, 1126
BccI	CCATC	2 cut(s)	194, 931
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	3 cut(s)	365, 993, 1106
BcoDI	GTCTC	2 cut(s)	330, 913
BfaI	CTAG	4 cut(s)	143, 305, 713, 1053
BisI	GCNGC	3 cut(s)	213, 1140, 1143
BlsI	GCNGC	3 cut(s)	214, 1141, 1144
Bme1390I	CCNGG	3 cut(s)	365, 993, 1106
Bme18I	GGWCC	2 cut(s)	706, 1086
BmgT120I	GGNCC	2 cut(s)	706, 1086
BmiI	GGNNCC	3 cut(s)	648, 707, 1087
BmrFI	CCNGG	3 cut(s)	365, 993, 1106
BmsI	GCATC	5 cut(s)	304, 725, 802, 844, 936
BpiI	GAAGAC	1 cut(s)	881
BpmI	CTGGAG	2 cut(s)	386, 1173
Bpu10I	CCTNAGC	2 cut(s)	858, 1135
BsaAI	YACGTR	2 cut(s)	105, 620
BsaBI	GATNNNNATC	2 cut(s)	138, 449
BsaHI	GRCGYC	1 cut(s)	1124
BsaI	GGTCTC	2 cut(s)	330, 913
BsaWI	WCCGGW	1 cut(s)	1091
BsaXI	ACNNNNNCTCC	2 cut(s)	1171, 1201
Bsc4I	CCNNNNNNNGG	3 cut(s)	484, 715, 1083
Bse8I	GATNNNNATC	2 cut(s)	138, 449
BseBI	CCWGG	3 cut(s)	365, 993, 1106
BseGI	GGATG	3 cut(s)	295, 493, 923
BseJI	GATNNNNATC	2 cut(s)	138, 449
BseLI	CCNNNNNNNGG	3 cut(s)	484, 715, 1083
BseMII	CTCAG	3 cut(s)	849, 908, 1149
BseRI	GAGGAG	2 cut(s)	694, 875
BseXI	GCAGC	2 cut(s)	199, 1126
BseYI	CCCAGC	1 cut(s)	592
BsgI	GTGCAG	1 cut(s)	880
BshFI	GGCC	3 cut(s)	576, 957, 1032
BshNI	GGYRCC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	1092
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	3 cut(s)	484, 715, 1083
BsmAI	GTCTC	2 cut(s)	330, 913
BsmFI	GGGAC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	3 cut(s)	576, 957, 1032
Bso31I	GGTCTC	2 cut(s)	330, 913
Bsp143I	GATC	3 cut(s)	139, 279, 1015
BspACI	CCGC	1 cut(s)	1143
BspANI	GGCC	3 cut(s)	576, 957, 1032
BspCNI	CTCAG	3 cut(s)	850, 909, 1148
BspHI	TCATGA	2 cut(s)	85, 481
BspLI	GGNNCC	3 cut(s)	648, 707, 1087
BspPI	GGATC	1 cut(s)	1023
BspT107I	GGYRCC	1 cut(s)	646
BspTNI	GGTCTC	2 cut(s)	330, 913
BssMI	GATC	3 cut(s)	139, 279, 1015
BssNI	GRCGYC	1 cut(s)	1124
Bst2UI	CCWGG	3 cut(s)	365, 993, 1106
Bst4CI	ACNGT	3 cut(s)	410, 771, 937
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	1124
BstBAI	YACGTR	2 cut(s)	105, 620
BstC8I	GCNNGC	2 cut(s)	471, 526
BstDEI	CTNAG	4 cut(s)	858, 917, 978, 1135
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	3 cut(s)	295, 493, 923
BstKTI	GATC	3 cut(s)	142, 282, 1018
BstMAI	GTCTC	2 cut(s)	330, 913
BstMBI	GATC	3 cut(s)	139, 279, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	436, 863
BstNI	CCWGG	3 cut(s)	365, 993, 1106
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	3 cut(s)	363, 991, 1104
BstV1I	GCAGC	2 cut(s)	199, 1126
BstV2I	GAAGAC	1 cut(s)	881
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	576, 957, 1032
BtsCI	GGATG	3 cut(s)	295, 493, 923
BtsIMutI	CAGTG	1 cut(s)	733
Cac8I	GCNNGC	2 cut(s)	471, 526
CaiI	CAGNNNCTG	1 cut(s)	775
CciI	TCATGA	2 cut(s)	85, 481
Cfr13I	GGNCC	2 cut(s)	706, 1086
Csp6I	GTAC	2 cut(s)	106, 491
CviAII	CATG	7 cut(s)	86, 462, 482, 608, 789, 928, 1012
CviQI	GTAC	2 cut(s)	106, 491
DdeI	CTNAG	4 cut(s)	858, 917, 978, 1135
DpnI	GATC	3 cut(s)	141, 281, 1017
DpnII	GATC	3 cut(s)	139, 279, 1015
DraIII	CACNNNGTG	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco31I	GGTCTC	2 cut(s)	330, 913
Eco32I	GATATC	2 cut(s)	517, 1002
Eco47I	GGWCC	2 cut(s)	706, 1086
Eco57I	CTGAAG	1 cut(s)	1189
Eco72I	CACGTG	1 cut(s)	620
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoO109I	RGGNCCY	2 cut(s)	706, 1086
EcoRII	CCWGG	3 cut(s)	363, 991, 1104
EcoRV	GATATC	2 cut(s)	517, 1002
FaeI	CATG	7 cut(s)	89, 465, 485, 611, 792, 931, 1015
FalI	AAGNNNNNCTT	2 cut(s)	980, 1012
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	7 cut(s)	85, 461, 481, 607, 788, 927, 1011
FblI	GTMKAC	3 cut(s)	354, 828, 969
Fnu4HI	GCNGC	3 cut(s)	213, 1140, 1143
FokI	GGATG	3 cut(s)	282, 500, 910
Fsp4HI	GCNGC	3 cut(s)	213, 1140, 1143
FspBI	CTAG	4 cut(s)	143, 305, 713, 1053
GluI	GCNGC	3 cut(s)	213, 1140, 1143
GsaI	CCCAGC	1 cut(s)	596
GsuI	CTGGAG	2 cut(s)	386, 1173
HaeIII	GGCC	3 cut(s)	576, 957, 1032
HapII	CCGG	1 cut(s)	1092
Hin1I	GRCGYC	1 cut(s)	1124
Hin1II	CATG	7 cut(s)	89, 465, 485, 611, 792, 931, 1015
HincII	GTYRAC	2 cut(s)	933, 970
HindII	GTYRAC	2 cut(s)	933, 970
HinfI	GANTC	5 cut(s)	35, 236, 345, 604, 873
HpaII	CCGG	1 cut(s)	1092
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	5 cut(s)	355, 497, 829, 933, 970
Hpy188I	TCNGA	4 cut(s)	455, 568, 1006, 1099
Hpy188III	TCNNGA	3 cut(s)	42, 86, 482
Hpy8I	GTNNAC	5 cut(s)	355, 497, 829, 933, 970
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	9 cut(s)	25, 155, 247, 326, 484, 488, 955, 1165, 1213
HpyCH4III	ACNGT	3 cut(s)	410, 771, 937
HpyCH4IV	ACGT	5 cut(s)	104, 493, 600, 619, 1124
HpyCH4V	TGCA	5 cut(s)	383, 461, 581, 738, 897
HpyF10VI	GCNNNNNNNGC	2 cut(s)	436, 863
HpyF3I	CTNAG	4 cut(s)	858, 917, 978, 1135
HpySE526I	ACGT	5 cut(s)	104, 493, 600, 619, 1124
Hsp92I	GRCGYC	1 cut(s)	1124
Hsp92II	CATG	7 cut(s)	89, 465, 485, 611, 792, 931, 1015
Kzo9I	GATC	3 cut(s)	139, 279, 1015
LmnI	GCTCC	2 cut(s)	811, 1192
Lsp1109I	GCAGC	2 cut(s)	199, 1126
LweI	GCATC	5 cut(s)	304, 725, 802, 844, 936
MaeI	CTAG	4 cut(s)	143, 305, 713, 1053
MaeII	ACGT	5 cut(s)	104, 493, 600, 619, 1124
MaeIII	GTNAC	3 cut(s)	404, 601, 1125
MalI	GATC	3 cut(s)	141, 281, 1017
MboI	GATC	3 cut(s)	139, 279, 1015
MboII	GAAGA	3 cut(s)	143, 383, 881
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	1 cut(s)	1015
MluCI	AATT	9 cut(s)	47, 153, 205, 424, 456, 561, 671, 745, 1111
MlyI	GAGTC	2 cut(s)	29, 598
MmeI	TCCRAC	1 cut(s)	1223
MseI	TTAA	7 cut(s)	57, 93, 195, 309, 423, 878, 951
MslI	CAYNNNNRTG	3 cut(s)	486, 620, 798
MspA1I	CMGCKG	2 cut(s)	233, 1139
MspI	CCGG	1 cut(s)	1092
MspR9I	CCNGG	3 cut(s)	365, 993, 1106
MunI	CAATTG	1 cut(s)	671
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	3 cut(s)	365, 993, 1106
MwoI	GCNNNNNNNGC	2 cut(s)	436, 863
NdeII	GATC	3 cut(s)	139, 279, 1015
NlaIII	CATG	7 cut(s)	89, 465, 485, 611, 792, 931, 1015
NlaIV	GGNNCC	3 cut(s)	648, 707, 1087
NmuCI	GTSAC	2 cut(s)	601, 1125
NspI	RCATGY	1 cut(s)	465
OliI	CACNNNNGTG	1 cut(s)	620
PagI	TCATGA	2 cut(s)	85, 481
PctI	GAATGC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	236, 345, 873
PkrI	GCNGC	3 cut(s)	214, 1141, 1144
PleI	GAGTC	2 cut(s)	29, 598
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	2 cut(s)	29, 598
Ppu21I	YACGTR	2 cut(s)	105, 620
PpuMI	RGGWCCY	2 cut(s)	706, 1086
Psp5II	RGGWCCY	2 cut(s)	706, 1086
Psp6I	CCWGG	3 cut(s)	363, 991, 1104
PspCI	CACGTG	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	3 cut(s)	363, 991, 1104
PspN4I	GGNNCC	3 cut(s)	648, 707, 1087
PspPI	GGNCC	2 cut(s)	706, 1086
PspPPI	RGGWCCY	2 cut(s)	706, 1086
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	1015
PvuII	CAGCTG	2 cut(s)	233, 1139
RsaI	GTAC	2 cut(s)	107, 492
RsaNI	GTAC	2 cut(s)	106, 491
RseI	CAYNNNNRTG	3 cut(s)	486, 620, 798
SalI	GTCGAC	1 cut(s)	968
SaqAI	TTAA	7 cut(s)	57, 93, 195, 309, 423, 878, 951
SatI	GCNGC	3 cut(s)	213, 1140, 1143
Sau3AI	GATC	3 cut(s)	139, 279, 1015
Sau96I	GGNCC	2 cut(s)	706, 1086
SchI	GAGTC	2 cut(s)	29, 598
ScrFI	CCNGG	3 cut(s)	365, 993, 1106
SfaNI	GCATC	5 cut(s)	304, 725, 802, 844, 936
SinI	GGWCC	2 cut(s)	706, 1086
SmiMI	CAYNNNNRTG	3 cut(s)	486, 620, 798
Sse9I	AATT	9 cut(s)	47, 153, 205, 424, 456, 561, 671, 745, 1111
SsiI	CCGC	1 cut(s)	1143
SspI	AATATT	2 cut(s)	415, 532
SspMI	CTAG	4 cut(s)	143, 305, 713, 1053
StyD4I	CCNGG	3 cut(s)	363, 991, 1104
TaaI	ACNGT	3 cut(s)	410, 771, 937
TaiI	ACGT	5 cut(s)	107, 496, 603, 622, 1127
TaqI	TCGA	1 cut(s)	969
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	9 cut(s)	47, 153, 205, 424, 456, 561, 671, 745, 1111
TauI	GCSGC	1 cut(s)	1145
TfiI	GAWTC	3 cut(s)	236, 345, 873
Tru1I	TTAA	7 cut(s)	57, 93, 195, 309, 423, 878, 951
Tru9I	TTAA	7 cut(s)	57, 93, 195, 309, 423, 878, 951
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	2 cut(s)	601, 1125
TseI	GCWGC	2 cut(s)	212, 1139
Tsp45I	GTSAC	2 cut(s)	601, 1125
TspDTI	ATGAA	5 cut(s)	74, 470, 816, 1000, 1147
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	1 cut(s)	733
VpaK11BI	GGWCC	2 cut(s)	706, 1086
XagI	CCTNNNNNAGG	1 cut(s)	482
XapI	RAATTY	3 cut(s)	47, 205, 561
XceI	RCATGY	1 cut(s)	465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	934
XmiI	GTMKAC	3 cut(s)	354, 828, 969
XspI	CTAG	4 cut(s)	143, 305, 713, 1053
ZraI	GACGTC	1 cut(s)	1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.