Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Forward (+)

9764520 .. 9770578

Gene Structure 6059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G168000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGACTTGTTTCTCTTTCTTTTTTAGGAAGAAGGCAGCATCCTCAGTTACAAGGACTGTTGAACTTGATGAAGTGGTTTCAGGCATTTTAAATGTTACTGTGTACACTTACAAGGAACTGCGAATTGCCACTGAGAACTTTCGTGAAGAAAATAAAATTGGTCAGGGAGGCTTTGGCTCCGTGTACAAGGGCACACTTAAGAATGGCACTTTGGCAGCTATAAAGGTATTGTCAGCAGAGTCTAGGCAAGGGTCAAGGGAATTTTTGACAGAAATCGAGGTGATTGCAGACATTGAGCATGATAACCTGGTTAAGCTATATGGTTGCTGTGCAGAAGGCAATCATAGGATACTGGTTTATGGCTATCTCGAGAATAATAGCCTTGCACAAACACTTCTTGGTGGAGGCCACAGTAGTATCCAGTTTAGTTGGTCTGCAAGGTGTAAAATATGCATTGGTGTTGCAAGGGGGCTTGCTTTTCTCCATGAGGAAGTTCAGCCCCATATTATTCACAGAGACATTAAAGCTAGCAATATTCTCCTTGATAAAGACCTCTCACCAAAAATTTCAGATTTCGGTCTGGCAAAGTTTATTGCACCCAACTTAACTCATGTTAGCACTCGTGTTGCTGGAACAGCAGGTTACTTGGCACCTGAGTATGCCATACGAGGTCAAGTGACAAGGAAAGCAGACGTCTACAGTTTTGGTGTTCTGATCTTGGAAATTATTTGCGGGAGGTGCAACACAAACAGACGATTACCATTAAAAGAACAATATCTTCTTCCAGTGGTATGGGAACACCATGAGAGGGAGCAGCTGGTGGAGTTAGTAGACACAGCATTGAATGGAATATTCAATGTTGAGGAGGCTTGCAGATTCCTAAAGATTGGCCTTCTCTGCACTCAAGACATGCCCAAGCTCCGACCATCCATGTCTACTGTTGTTGAGATGCTGACAGGTGAAAGAGATGTGAATGAGGAGAAGATATCCAAACCAGGACTGCTTTCTGAATTCATGGATCAGACAGAAGGCCACAGGGATAAGGCCACTGCAAGACCTTCATCTTGCACAGTATCTGCCTCAGGGAGGTTTATCAATACATCATCATCATCAGAAAACATAACTACTTCATTTGCCACAATGACCTTCAATTCTATATATGACCGAAGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

43.45

Weight (kDa)

6.8

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	629
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	3 cut(s)	696, 831, 935
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	1 cut(s)	1026
AcsI	RAATTY	3 cut(s)	260, 564, 1010
AcyI	GRCGYC	1 cut(s)	693
AfaI	GTAC	2 cut(s)	104, 185
AfiI	CCNNNNNNNGG	2 cut(s)	808, 1086
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	62, 844, 856, 1150
AjnI	CCWGG	2 cut(s)	306, 994
AjuI	GAANNNNNNNTTGG	4 cut(s)	141, 173, 194, 226
AluBI	AGCT	5 cut(s)	218, 316, 527, 817, 919
AluI	AGCT	5 cut(s)	218, 316, 527, 817, 919
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	1026
AlwNI	CAGNNNCTG	1 cut(s)	1076
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	4 cut(s)	406, 889, 1030, 1044
ApeKI	GCWGC	3 cut(s)	35, 215, 814
ApoI	RAATTY	3 cut(s)	260, 564, 1010
AsuHPI	GGTGA	3 cut(s)	292, 549, 971
AsuNHI	GCTAGC	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	1081
BaeGI	GKGCMC	1 cut(s)	194
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanI	GGYRCC	1 cut(s)	649
BauI	CACGAG	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	47, 227, 826
BccI	CCATC	1 cut(s)	934
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	2 cut(s)	308, 996
BciVI	GTATCC	2 cut(s)	342, 428
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	2 cut(s)	243, 528
BfmI	CTRYAG	1 cut(s)	697
BfrI	CTTAAG	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	629
BfuI	GTATCC	2 cut(s)	342, 428
BisI	GCNGC	3 cut(s)	36, 216, 815
BlsI	GCNGC	3 cut(s)	37, 217, 816
Bme1390I	CCNGG	2 cut(s)	308, 996
BmeT110I	CYCGRG	1 cut(s)	368
BmiI	GGNNCC	2 cut(s)	178, 651
BmrFI	CCNGG	2 cut(s)	308, 996
BmsI	GCATC	2 cut(s)	47, 939
BmtI	GCTAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 1086
Bse1I	ACTGG	3 cut(s)	357, 421, 785
Bse21I	CCTNAGG	1 cut(s)	1081
BseBI	CCWGG	2 cut(s)	308, 996
BseGI	GGATG	2 cut(s)	38, 926
BseLI	CCNNNNNNNGG	2 cut(s)	808, 1086
BseMII	CTCAG	4 cut(s)	57, 123, 645, 1095
BseNI	ACTGG	3 cut(s)	357, 421, 785
BseRI	GAGGAG	2 cut(s)	878, 992
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	47, 227, 826
BsgI	GTGCAG	2 cut(s)	351, 883
BshFI	GGCC	4 cut(s)	408, 891, 1032, 1046
BshNI	GGYRCC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	808, 1086
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	4 cut(s)	408, 891, 1032, 1046
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp1407I	TGTACA	2 cut(s)	102, 183
Bsp143I	GATC	2 cut(s)	714, 1018
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	4 cut(s)	408, 891, 1032, 1046
BspCNI	CTCAG	4 cut(s)	56, 124, 646, 1094
BspLI	GGNNCC	2 cut(s)	178, 651
BspMI	ACCTGC	1 cut(s)	629
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	1026
BspT107I	GGYRCC	1 cut(s)	649
BspTI	CTTAAG	1 cut(s)	197
BsrGI	TGTACA	2 cut(s)	102, 183
BsrI	ACTGG	3 cut(s)	357, 421, 785
BssMI	GATC	2 cut(s)	714, 1018
BssNI	GRCGYC	1 cut(s)	693
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	308, 996
Bst4CI	ACNGT	6 cut(s)	58, 100, 413, 701, 940, 1072
BstACI	GRCGYC	1 cut(s)	693
BstAFI	CTTAAG	1 cut(s)	197
BstAUI	TGTACA	2 cut(s)	102, 183
BstC8I	GCNNGC	3 cut(s)	474, 529, 871
BstDEI	CTNAG	4 cut(s)	43, 132, 654, 1081
BstENI	CCTNNNNNAGG	1 cut(s)	1084
BstF5I	GGATG	2 cut(s)	38, 926
BstKTI	GATC	2 cut(s)	717, 1021
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	2 cut(s)	714, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	635, 738, 897
BstNI	CCWGG	2 cut(s)	308, 996
BstNSI	RCATGY	1 cut(s)	913
BstSCI	CCNGG	2 cut(s)	306, 994
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	47, 227, 826
BstXI	CCANNNNNNTGG	1 cut(s)	792
Bsu36I	CCTNAGG	1 cut(s)	1081
BsuI	GTATCC	2 cut(s)	342, 428
BsuRI	GGCC	4 cut(s)	408, 891, 1032, 1046
BtsCI	GGATG	2 cut(s)	38, 926
BtsI	GCAGTG	1 cut(s)	1047
BtsIMutI	CAGTG	3 cut(s)	129, 792, 1047
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	3 cut(s)	474, 529, 871
CaiI	CAGNNNCTG	1 cut(s)	1076
CsiI	ACCWGGT	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	103, 184
CviAII	CATG	7 cut(s)	299, 485, 611, 803, 910, 931, 1015
CviQI	GTAC	2 cut(s)	103, 184
DdeI	CTNAG	4 cut(s)	43, 132, 654, 1081
DpnI	GATC	2 cut(s)	716, 1020
DpnII	GATC	2 cut(s)	714, 1018
DraI	TTTAAA	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	987
Eco81I	CCTNAGG	1 cut(s)	1081
Eco88I	CYCGRG	1 cut(s)	368
EcoNI	CCTNNNNNAGG	1 cut(s)	1084
EcoRI	GAATTC	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	306, 994
EcoRV	GATATC	1 cut(s)	987
EcoT22I	ATGCAT	1 cut(s)	455
FaeI	CATG	7 cut(s)	302, 488, 614, 806, 913, 934, 1018
FatI	CATG	7 cut(s)	298, 484, 610, 802, 909, 930, 1014
FauI	CCCGC	1 cut(s)	725
FblI	GTMKAC	3 cut(s)	696, 831, 935
Fnu4HI	GCNGC	3 cut(s)	36, 216, 815
FokI	GGATG	2 cut(s)	25, 913
Fsp4HI	GCNGC	3 cut(s)	36, 216, 815
FspBI	CTAG	2 cut(s)	243, 528
GluI	GCNGC	3 cut(s)	36, 216, 815
HaeIII	GGCC	4 cut(s)	408, 891, 1032, 1046
Hin1I	GRCGYC	1 cut(s)	693
Hin1II	CATG	7 cut(s)	302, 488, 614, 806, 913, 934, 1018
HinfI	GANTC	2 cut(s)	239, 876
HphI	GGTGA	3 cut(s)	292, 549, 971
Hpy166II	GTNNAC	6 cut(s)	103, 105, 184, 697, 832, 936
Hpy188I	TCNGA	6 cut(s)	571, 714, 923, 1009, 1023, 1114
Hpy188III	TCNNGA	4 cut(s)	143, 368, 370, 905
Hpy8I	GTNNAC	6 cut(s)	103, 105, 184, 697, 832, 936
HpyAV	CCTTC	6 cut(s)	25, 329, 902, 1022, 1068, 1156
HpyCH4III	ACNGT	6 cut(s)	58, 100, 413, 701, 940, 1072
HpyCH4IV	ACGT	1 cut(s)	693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	635, 738, 897
HpyF3I	CTNAG	4 cut(s)	43, 132, 654, 1081
HpySE526I	ACGT	1 cut(s)	693
Hsp92I	GRCGYC	1 cut(s)	693
Hsp92II	CATG	7 cut(s)	302, 488, 614, 806, 913, 934, 1018
Kzo9I	GATC	2 cut(s)	714, 1018
LmnI	GCTCC	3 cut(s)	182, 811, 924
Lsp1109I	GCAGC	3 cut(s)	47, 227, 826
LweI	GCATC	2 cut(s)	47, 939
MabI	ACCWGGT	1 cut(s)	306
MaeI	CTAG	2 cut(s)	243, 528
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	4 cut(s)	46, 94, 641, 676
MalI	GATC	2 cut(s)	716, 1020
MboI	GATC	2 cut(s)	714, 1018
MboII	GAAGA	5 cut(s)	40, 158, 770, 773, 994
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	8 cut(s)	123, 156, 260, 564, 723, 1010, 1150, 1171
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	946
Mph1103I	ATGCAT	1 cut(s)	455
MseI	TTAA	6 cut(s)	89, 198, 312, 522, 605, 764
MspA1I	CMGCKG	1 cut(s)	817
MspCI	CTTAAG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	308, 996
MvaI	CCWGG	2 cut(s)	308, 996
MwoI	GCNNNNNNNGC	3 cut(s)	635, 738, 897
NdeII	GATC	2 cut(s)	714, 1018
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	7 cut(s)	302, 488, 614, 806, 913, 934, 1018
NlaIV	GGNNCC	2 cut(s)	178, 651
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	1 cut(s)	913
PaeR7I	CTCGAG	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	876
PkrI	GCNGC	3 cut(s)	37, 217, 816
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	306, 994
PspGI	CCWGG	2 cut(s)	306, 994
PspN4I	GGNNCC	2 cut(s)	178, 651
PstNI	CAGNNNCTG	1 cut(s)	1076
PvuII	CAGCTG	1 cut(s)	817
RsaI	GTAC	2 cut(s)	104, 185
RsaNI	GTAC	2 cut(s)	103, 184
SaqAI	TTAA	6 cut(s)	89, 198, 312, 522, 605, 764
SatI	GCNGC	3 cut(s)	36, 216, 815
Sau3AI	GATC	2 cut(s)	714, 1018
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	308, 996
SduI	GDGCHC	1 cut(s)	194
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	2 cut(s)	47, 939
SfcI	CTRYAG	1 cut(s)	697
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	3 cut(s)	197, 368, 903
SmoI	CTYRAG	3 cut(s)	197, 368, 903
Sse9I	AATT	8 cut(s)	123, 156, 260, 564, 723, 1010, 1150, 1171
SsiI	CCGC	1 cut(s)	732
SspI	AATATT	2 cut(s)	535, 852
SspMI	CTAG	2 cut(s)	243, 528
StyD4I	CCNGG	2 cut(s)	306, 994
TaaI	ACNGT	6 cut(s)	58, 100, 413, 701, 940, 1072
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	276, 369
TaqII	GACCGA	1 cut(s)	566
TasI	AATT	8 cut(s)	123, 156, 260, 564, 723, 1010, 1150, 1171
TatI	WGTACW	2 cut(s)	102, 183
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	6 cut(s)	89, 198, 312, 522, 605, 764
Tru9I	TTAA	6 cut(s)	89, 198, 312, 522, 605, 764
TscAI	CASTG	3 cut(s)	136, 792, 1054
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	3 cut(s)	35, 215, 814
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	4 cut(s)	84, 1003, 1050, 1119
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	136, 792, 1054
Vha464I	CTTAAG	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	1084
XapI	RAATTY	3 cut(s)	260, 564, 1010
XceI	RCATGY	1 cut(s)	913
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	3 cut(s)	696, 831, 935
XspI	CTAG	2 cut(s)	243, 528
ZraI	GACGTC	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.