Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002103

Physical Location & Seq

Genomic Coordinates Reverse (-)

29609057 .. 29612562

Gene Structure 3506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1198000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAGTTGTTTTTCCTTCTTAAGCGGTGCAAGGGTGAACAAATCAAGAAAACCCAGTTCTGATATCGATGAAGAAGTTTCTGGCATTCATGATGTTAAACTATTCACTTACAAAGAGTTGATAATCGCAACTGAAGATTTTAGTCCAGCCAATAAAGTCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGCCGGCTTAAAGATGGAAAATTTGCTGCTATAAAAGTTCTTTCAGCTGAATCGAGACAAGGGGTGAAGGAATTTTTGACTGAGATTGACGTGATCTCAAAAATCGAGCATGAAAATCTAGTTAAGCTCTATGGCTGTTGTGTTGAAGGAAACCAAAGAATTCTGGTCTACAACTACCTTGAGAATAATAGTCTTGCACAAAATCTTATTGGTGGAAGTAGCAGTAATCTCCACTTTAGTTGGCAAACTAGGCGTCAAATATGCATTGGGATTGCATGTGGGCTTGCCTTCCTTCATGAGGAAGTACATCCCCATATTATTCATAGAGATATCAAAGCAAGCAACATTCTCCTCGACAAAGACTTAATGCCAAAAATTTCAGATTTTGGTCTTGCAAAACTTATCCCTCCTAACATGACCCATGTTAGCACGCGTGTGGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATACGAGGGCAATTGACAAGGAAAGCTGATATTTATAGCTTTGGAGTGCTCATTGTGGAAATAGTCAGTGGCAGAAGTAATACAAATAACCGACTACCTATTGACGAACAGTATTTGATTGAAAGGCTTATATTCGTGTTCTGTGTGTCTACATGGCAACTCTACGAACGGAAGGAGCTTGTTGGACTGGTAGACACATCACTCGACGGTGATTTTGATGCTGAGGAAGCTTGTAGGTTTCTAAAGATCGGCCTCCTCTGCACCCAAGACACTGCGAAGCTCAGGCCATCCATGTCAACCGTGGTCAAGATGCTAAAAGGCAAGAAGGTTGTCAACGATGATAAGATAACAAAGCCAGGCTTGATAACCGATTTCATGGACCTCAAAGTACGAGAGCCTCGTGATACAAAGCCTAGTGCACAGACTACTACATCTTCCTACAATGCGTCCTCGGGCTCAGGCTCAGACAACAAGGACAATTCAACATTCTCCTTAGCAACCTCAGCTGCTGCTACTACCACCTTCATTTCAAACTTGTCATCGGAAACCTCAGCCGATAATACATCGAACTTCAGCTTCCGCACCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

418

Amino Acids

46.04

Weight (kDa)

7.07

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 322	1.9e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	51 - 321	1.2e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16670
fragaria_vesca	FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g16070 FvH4_3g18580
malus_domestica	MD03G1240900.v1.1 MD05G1214900.v1.1 MD10G1198000.v1.1 MD11G1260300.v1.1
prunus_persica	Prupe.4G143900_v2.0.a1 Prupe.4G143900_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1 Prupe.4G168000_v2.0.a1
pyrus_communis	pycom03g18740 pycom05g19800 pycom10g17070 pycom11g22980
rosa_chinensis	RchiOBHm_Chr5g0027041 RchiOBHm_Chr5g0031391
rosa_laevigata	RLG00000033303
rosa_multiflora	Rmu_co8183894.1_g000001 Rmu_sc0000882.1_g000021 Rmu_sc0007782.1_g000010 Rmu_sc0018148.1_g000004 Rmu_sc0041046.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048950 Rroxscaffold_1G00052450
rosa_rugosa	Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0096800 Rorug05G0124800 Rorug05G0124900 Rorug05G0125000 Rorug05G0125000
rosa_samantha	Rh5AG190400 Rh5AG217500 Rh5BG188000 Rh5CG207800 Rh5DG189800
rosa_wichuraiana	Rw5G017340 Rw5G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	649
AccI	GTMKAC	3 cut(s)	357, 812, 855
AccII	CGCG	1 cut(s)	622
AciI	CCGC	2 cut(s)	24, 1243
AcsI	RAATTY	4 cut(s)	209, 260, 348, 564
AcuI	CTGAAG	2 cut(s)	153, 1219
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	2 cut(s)	495, 1053
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflII	CTTAAG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	335, 785, 1146, 1194
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AleI	CACNNNNGTG	1 cut(s)	623
AluBI	AGCT	9 cut(s)	236, 316, 689, 702, 841, 893, 943, 1169, 1239
AluI	AGCT	9 cut(s)	236, 316, 689, 702, 841, 893, 943, 1169, 1239
Alw21I	GWGCWC	2 cut(s)	714, 1084
Alw26I	GTCTC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	1080
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	2 cut(s)	653, 1114
AoxI	GGCC	3 cut(s)	190, 913, 947
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	3 cut(s)	215, 1169, 1172
ApoI	RAATTY	4 cut(s)	209, 260, 348, 564
ArsI	GACNNNNNNTTYG	4 cut(s)	427, 459, 860, 892
AspS9I	GGNCC	2 cut(s)	190, 1042
AsuHPI	GGTGA	3 cut(s)	46, 265, 884
AvaI	CYCGRG	2 cut(s)	653, 1114
AvaII	GGWCC	1 cut(s)	1042
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	1121
BauI	CACGAG	1 cut(s)	1062
Bbv12I	GWGCWC	2 cut(s)	714, 1084
BbvCI	CCTCAGC	3 cut(s)	885, 1165, 1213
BbvI	GCAGC	3 cut(s)	202, 1156, 1159
BccI	CCATC	2 cut(s)	197, 958
BciT130I	CCWGG	1 cut(s)	1020
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	3 cut(s)	308, 438, 1077
BfrI	CTTAAG	1 cut(s)	19
BisI	GCNGC	3 cut(s)	216, 1170, 1173
BlsI	GCNGC	3 cut(s)	217, 1171, 1174
Bme1390I	CCNGG	1 cut(s)	1020
Bme18I	GGWCC	1 cut(s)	1042
BmeT110I	CYCGRG	2 cut(s)	653, 1114
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	190, 1042
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	1 cut(s)	1020
BmrI	ACTGGG	1 cut(s)	48
BmsI	GCATC	2 cut(s)	871, 963
BmuI	ACTGGG	1 cut(s)	48
Bpu10I	CCTNAGC	6 cut(s)	885, 944, 1120, 1156, 1165, 1213
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	963, 1113
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	54, 855
BseBI	CCWGG	1 cut(s)	1020
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	963, 1113
BseGI	GGATG	2 cut(s)	496, 950
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	7 cut(s)	261, 876, 958, 1134, 1140, 1179, 1227
BseNI	ACTGG	2 cut(s)	54, 855
BseRI	GAGGAG	2 cut(s)	530, 908
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	3 cut(s)	202, 1156, 1159
BsgI	GTGCAG	1 cut(s)	907
Bsh1236I	CGCG	1 cut(s)	622
BshFI	GGCC	3 cut(s)	192, 915, 949
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	714, 1084
BsiHKCI	CYCGRG	2 cut(s)	653, 1114
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	3 cut(s)	192, 915, 949
BsoBI	CYCGRG	2 cut(s)	653, 1114
Bsp1286I	GDGCHC	3 cut(s)	714, 1084, 1121
Bsp143I	GATC	2 cut(s)	282, 909
BspACI	CCGC	2 cut(s)	24, 1243
BspANI	GGCC	3 cut(s)	192, 915, 949
BspCNI	CTCAG	7 cut(s)	262, 877, 957, 1133, 1139, 1178, 1226
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	622
BspHI	TCATGA	2 cut(s)	88, 484
BspLI	GGNNCC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	649
BspTI	CTTAAG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	54, 855
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	963, 1113
BssMI	GATC	2 cut(s)	282, 909
BssNI	GRCGYC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	1062
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	1 cut(s)	1020
Bst4CI	ACNGT	4 cut(s)	774, 872, 964, 1249
BstACI	GRCGYC	1 cut(s)	442
BstAFI	CTTAAG	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	194, 474, 529, 620
BstDEI	CTNAG	8 cut(s)	270, 885, 944, 1120, 1126, 1156, 1165, 1213
BstDSI	CCRYGG	1 cut(s)	963
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	2 cut(s)	496, 950
BstFNI	CGCG	1 cut(s)	622
BstKTI	GATC	2 cut(s)	285, 912
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	282, 909
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 890, 921, 1166
BstNI	CCWGG	1 cut(s)	1020
BstNSI	RCATGY	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	1018
BstSLI	GKGCMC	1 cut(s)	1084
BstUI	CGCG	1 cut(s)	622
BstV1I	GCAGC	3 cut(s)	202, 1156, 1159
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	192, 915, 949
BsuTUI	ATCGAT	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	963
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	496, 950
BtsI	GCAGTG	1 cut(s)	933
BtsIMutI	CAGTG	2 cut(s)	736, 933
Cac8I	GCNNGC	4 cut(s)	194, 474, 529, 620
CaiI	CAGNNNCTG	1 cut(s)	1172
CciI	TCATGA	2 cut(s)	88, 484
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	190, 1042
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	2 cut(s)	431, 1098
Csp6I	GTAC	2 cut(s)	494, 1052
CspCI	CAANNNNNGTGG	2 cut(s)	410, 445
CviAII	CATG	9 cut(s)	89, 299, 465, 485, 604, 611, 816, 955, 1039
CviQI	GTAC	2 cut(s)	494, 1052
DdeI	CTNAG	8 cut(s)	270, 885, 944, 1120, 1126, 1156, 1165, 1213
DpnI	GATC	2 cut(s)	284, 911
DpnII	GATC	2 cut(s)	282, 909
Eco24I	GRGCYC	1 cut(s)	1121
Eco32I	GATATC	2 cut(s)	64, 520
Eco47I	GGWCC	1 cut(s)	1042
Eco57I	CTGAAG	2 cut(s)	153, 1219
Eco88I	CYCGRG	2 cut(s)	653, 1114
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	1018
EcoRV	GATATC	2 cut(s)	64, 520
EcoT22I	ATGCAT	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	1121
FaeI	CATG	9 cut(s)	92, 302, 468, 488, 607, 614, 819, 958, 1042
FalI	AAGNNNNNCTT	2 cut(s)	1007, 1039
FatI	CATG	9 cut(s)	88, 298, 464, 484, 603, 610, 815, 954, 1038
FblI	GTMKAC	3 cut(s)	357, 812, 855
Fnu4HI	GCNGC	3 cut(s)	216, 1170, 1173
FokI	GGATG	2 cut(s)	483, 937
FriOI	GRGCYC	1 cut(s)	1121
Fsp4HI	GCNGC	3 cut(s)	216, 1170, 1173
FspBI	CTAG	3 cut(s)	308, 438, 1077
GluI	GCNGC	3 cut(s)	216, 1170, 1173
HaeIII	GGCC	3 cut(s)	192, 915, 949
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	2 cut(s)	431, 1098
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	9 cut(s)	92, 302, 468, 488, 607, 614, 819, 958, 1042
HincII	GTYRAC	2 cut(s)	960, 997
HindII	GTYRAC	2 cut(s)	960, 997
HindIII	AAGCTT	1 cut(s)	891
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	3 cut(s)	46, 265, 884
Hpy166II	GTNNAC	7 cut(s)	37, 358, 813, 856, 960, 997, 1082
Hpy188I	TCNGA	4 cut(s)	61, 571, 1129, 1207
Hpy188III	TCNNGA	6 cut(s)	45, 89, 243, 485, 970, 1064
Hpy8I	GTNNAC	7 cut(s)	37, 358, 813, 856, 960, 997, 1082
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	9 cut(s)	25, 158, 250, 329, 487, 491, 829, 982, 1195
HpyCH4III	ACNGT	4 cut(s)	774, 872, 964, 1249
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	8 cut(s)	29, 386, 453, 464, 584, 662, 924, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 890, 921, 1166
HpyF3I	CTNAG	8 cut(s)	270, 885, 944, 1120, 1126, 1156, 1165, 1213
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	9 cut(s)	92, 302, 468, 488, 607, 614, 819, 958, 1042
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	282, 909
LmnI	GCTCC	1 cut(s)	838
Lsp1109I	GCAGC	3 cut(s)	202, 1156, 1159
LweI	GCATC	2 cut(s)	871, 963
MaeI	CTAG	3 cut(s)	308, 438, 1077
MaeII	ACGT	1 cut(s)	279
MalI	GATC	2 cut(s)	284, 911
MboI	GATC	2 cut(s)	282, 909
MboII	GAAGA	3 cut(s)	83, 146, 1089
MfeI	CAATTG	1 cut(s)	674
MhlI	GDGCHC	3 cut(s)	714, 1084, 1121
MluCI	AATT	6 cut(s)	209, 260, 348, 564, 674, 1141
MluI	ACGCGT	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	826
Mph1103I	ATGCAT	1 cut(s)	455
MroNI	GCCGGC	1 cut(s)	192
MseI	TTAA	5 cut(s)	20, 96, 198, 312, 554
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	2 cut(s)	236, 1169
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	1020
MunI	CAATTG	1 cut(s)	674
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	1020
MvnI	CGCG	1 cut(s)	622
MwoI	GCNNNNNNNGC	4 cut(s)	439, 890, 921, 1166
NaeI	GCCGGC	1 cut(s)	194
NdeII	GATC	2 cut(s)	282, 909
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	9 cut(s)	92, 302, 468, 488, 607, 614, 819, 958, 1042
NlaIV	GGNNCC	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	1 cut(s)	468
OliI	CACNNNNGTG	1 cut(s)	623
PagI	TCATGA	2 cut(s)	88, 484
PcsI	WCGNNNNNNNCGW	1 cut(s)	1060
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	217, 1171, 1174
Psp6I	CCWGG	1 cut(s)	1018
PspGI	CCWGG	1 cut(s)	1018
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	190, 1042
PstNI	CAGNNNCTG	1 cut(s)	1172
PvuII	CAGCTG	2 cut(s)	236, 1169
RsaI	GTAC	2 cut(s)	495, 1053
RsaNI	GTAC	2 cut(s)	494, 1052
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	5 cut(s)	20, 96, 198, 312, 554
SatI	GCNGC	3 cut(s)	216, 1170, 1173
Sau3AI	GATC	2 cut(s)	282, 909
Sau96I	GGNCC	2 cut(s)	190, 1042
ScrFI	CCNGG	1 cut(s)	1020
SduI	GDGCHC	3 cut(s)	714, 1084, 1121
SfaNI	GCATC	2 cut(s)	871, 963
SinI	GGWCC	1 cut(s)	1042
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	2 cut(s)	19, 368
SmoI	CTYRAG	2 cut(s)	19, 368
Sse9I	AATT	6 cut(s)	209, 260, 348, 564, 674, 1141
SsiI	CCGC	2 cut(s)	24, 1243
SspMI	CTAG	3 cut(s)	308, 438, 1077
StyD4I	CCNGG	1 cut(s)	1018
TaaI	ACNGT	4 cut(s)	774, 872, 964, 1249
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	6 cut(s)	66, 242, 294, 543, 867, 1229
TasI	AATT	6 cut(s)	209, 260, 348, 564, 674, 1141
TatI	WGTACW	1 cut(s)	493
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	5 cut(s)	20, 96, 198, 312, 554
Tru9I	TTAA	5 cut(s)	20, 96, 198, 312, 554
TscAI	CASTG	2 cut(s)	736, 940
TseI	GCWGC	3 cut(s)	215, 1169, 1172
TspDTI	ATGAA	7 cut(s)	77, 84, 315, 473, 500, 1027, 1177
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	2 cut(s)	736, 940
Vha464I	CTTAAG	1 cut(s)	19
VneI	GTGCAC	1 cut(s)	1080
VpaK11BI	GGWCC	1 cut(s)	1042
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	4 cut(s)	209, 260, 348, 564
XceI	RCATGY	1 cut(s)	468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	961
XmiI	GTMKAC	3 cut(s)	357, 812, 855
XspI	CTAG	3 cut(s)	308, 438, 1077
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.