Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0005303

Physical Location & Seq

Genomic Coordinates Forward (+)

37425307 .. 37427427

Gene Structure 2121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1260200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGTCTAATTTTTTAAGTATATTAATAAAAAACCAAATCCATGAGTTTGATTTGAGTGAAATAGTAACGTCACGTGATTGTGTTTCGACTATATCGAAAAGTTACTCCAGAATTTATGTTTGCCAACAAGAAAACAGAAGGAAAGCAAAAGTATCAAAGCTTTGGCTTCTCTTCTACCCTAACTTGTATAGAAAACACACAGTTTGGTGCGTTAGCTCATCTCCTCCATTTCATCTACACTACCCCACAAATATCACATTCTCTCTCTCTCACTTCTACTCTTCCCCCCACAACATGGAGTTGCCTGTGAAAATGCCGGTTTCCCGCAGCCTGATAACACCATACAGACTTGAAACCAGAAACTTGTGCTACAAACTATCAACCCGATTCGATGAGATGAAATTCGTGTGTTGTAGGGAGAGCCCGAGGAGAGTTCCGAAGTTCGTTCTGAAGGATGTGAATTGTGAAGCAAGGCCTGCAGAGATCACTGCAATCGCTGGCCCTAGTGGAGCTGGAAAAACCACACTGCTAGAGATTCTTGCTGGAAAGATATCCCCAAAGAAAGTGTGTGGTGAGGTGCTGGTGAATGGTCAGCCTATGGACACAAAAAGTTTTCGCAGAATGTCGGGCTATGTCACACAGGACGATGCCCTATTTCCGTTACTTACAGTTGAAGAAACCCTCATATACAGTGCTCTGCTGAGGCTTCCTGGTGGGAGGAAAAATGCTGCAGATGAAGTGTGGAAGCTGATGAAGGAGCTCGGGCTGGTACATGTCGCGGGTTCAAGAGTCGGCTGGGGATCAAACAATGGGATTTCGGGTGGTGAAAGGCGCAGGGTTTCGATTGGAGTTGATTTAGTTCATAATCCAGCTGTGGTTTTGATTGATGAACCAACTTCAGGGTTGGATTCTGCCTCAGCTTTCCATGTAGTCTCATTGCTCAGAACAATGGTTTTCAATCAGGGTAAAACTATTGTCCTGACAATTCACCAACCAGGTTTCCGAATCCTAGAGATGTTCGATCGCGTTGTTCTGCTTTCAAATGGAACTGTGATCCACAATGGATCATTGTGTCTTCTACAAGAAAGGCTCAATTTAGCTGGCCATCGCATCCCCAACCATGTTAACTTGCTCGAATTCGCCATTGATGTTATCAAGAGCTTGGAGGGTGCACAAACTTCAGAAACCTTGCACAACCAATGTTTCCGGCCTCTAGAACAAAGGTTTGTATGCTCTGGTATCTTAGCAAAGAAGCTTCCAGTCTACCCAAATGCGCGTCCCCGGGAAGTTGTAATACTAGGGCGAAGATTTTGTAGCAACATATTTAGAACCAAGCAATTGTTTGTCACTAGAGTTATACAAGCCTTGGTAGCTGGATTCGTACTCGGAAGCATTTTCTTTAATGTTGGAGCGGAAAAAGGGAGCTTTGCCTTGCAAACACAAACTGGATTTTTCGCCTTCAGCCTCACATTCTTGCTGTCTTCCAGCACAGAAGGCCTACCGATTTTCTTACAAGAGCGGAGAATACTAATGAATGAGACTTCCAAGGGAGCCTATCGAGTTTCCTCCTATGTCATAGCAAACACCCTCATTTTCCTCCCTTTCCTTTTGATGGTTTGTTTTCTGTTCACCGCACCGGTTTACTGGCTAGTCGGATTGAGGAGGGACTTTGATGCATTCCTCTACTTCTCTCTGGTGGTCTGGATGGTTCTTCTCATGTCCAATTCTGTTGTGGCCTGCTTCAGTGCTCTTGTGCCCAACTTCATCATGGGGAGTTCCCTGATTTCCGGGCTCATGGGATCTTTCTTTCTCTTTTCGGGATACTTCATTTCAAAGGACCGGCTTCCAAGCTACTGGATATTCATGCACTACTTGAGTCTTTTCAAGTACCCGTTCGATTGCTTTATAATAAATGAATACGGAGGAGAGCAGGGAAGGAGATGCATTCAACAGATTGGCAATGAAGGATGCAATCTTTTCGGGGATGTATTCTTGAGACAGCAGGGTTTAAAAGAAGCACAGAAATGGAGCAATTTGGGTGTGATGCTGGTATTCATAATTGGTTATAGAGTGTTTTGTTTTCTCATTCTGTGGTGCAGATGCTGCAGAAATAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

707

Amino Acids

79.96

Weight (kDa)

9.42

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	150 - 300	5.2e-30	ABC transporter
ABC2_membrane	PF01061	430 - 640	3.7e-49	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53270
fragaria_vesca	FvH4_3g18590 FvH4_6g27140
malus_domestica	MD03G1240800.v1.1 MD11G1260200.v1.1
prunus_persica	Prupe.3G122400_v2.0.a1 Prupe.3G122400_v2.0.a1 Prupe.4G168100_v2.0.a1
pyrus_communis	pycom03g18730 pycom11g22970
rosa_chinensis	RchiOBHm_Chr2g0129131 RchiOBHm_Chr5g0031401
rosa_laevigata	RLG00000019057 RLG00000033304
rosa_multiflora	Rmu_sc0007782.1_g000009 Rmu_sc0009045.1_g000001 Rmu_sc0018148.1_g000005
rosa_roxburghii	Rroxscaffold_1G00048940 Rroxscaffold_2G00114830
rosa_rugosa	Rorug02G0285000 Rorug05G0125000
rosa_samantha	Rh2AG337100 Rh2BG345100 Rh2CG324500 Rh2DG361900 Rh5BG217300 Rh5CG241100 Rh5DG222700
rosa_wichuraiana	Rw2G027340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1907
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccBSI	CCGCTC	2 cut(s)	1412, 1519
AccI	GTMKAC	1 cut(s)	1263
AccII	CGCG	3 cut(s)	779, 1026, 1276
AciI	CCGC	5 cut(s)	325, 779, 1412, 1519, 1632
AclWI	GGATC	4 cut(s)	808, 1048, 1072, 1807
AcoI	YGGCCR	1 cut(s)	1102
AcsI	RAATTY	3 cut(s)	111, 401, 1136
AcuI	CTGAAG	5 cut(s)	470, 882, 1164, 1444, 1726
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	3 cut(s)	771, 1383, 1889
AfiI	CCNNNNNNNGG	3 cut(s)	295, 899, 1612
AflIII	ACRYGT	1 cut(s)	772
AgeI	ACCGGT	1 cut(s)	1636
AgsI	TTSAA	8 cut(s)	353, 674, 786, 958, 1041, 1833, 1885, 1949
AjnI	CCWGG	2 cut(s)	709, 994
Alw21I	GWGCWC	4 cut(s)	697, 762, 1174, 1750
Alw26I	GTCTC	3 cut(s)	937, 1532, 1990
Alw44I	GTGCAC	1 cut(s)	1170
AlwI	GGATC	4 cut(s)	808, 1048, 1072, 1807
AlwNI	CAGNNNCTG	1 cut(s)	2103
Ama87I	CYCGRG	3 cut(s)	424, 761, 1281
AoxI	GGCC	6 cut(s)	473, 499, 1102, 1208, 1495, 1734
ApaLI	GTGCAC	1 cut(s)	1170
ApeKI	GCWGC	3 cut(s)	327, 728, 2103
ApoI	RAATTY	3 cut(s)	111, 401, 1136
AseI	ATTAAT	1 cut(s)	23
AsiGI	ACCGGT	1 cut(s)	1636
AspLEI	GCGC	2 cut(s)	834, 1276
AspS9I	GGNCC	2 cut(s)	500, 1837
AsuC2I	CCSGG	3 cut(s)	1282, 1283, 1789
AsuHPI	GGTGA	5 cut(s)	584, 595, 836, 980, 1621
AvaI	CYCGRG	3 cut(s)	424, 761, 1281
AvaII	GGWCC	1 cut(s)	1837
BaeGI	GKGCMC	2 cut(s)	1174, 1758
BalI	TGGCCA	1 cut(s)	1104
BanII	GRGCYC	3 cut(s)	425, 762, 1794
BarI	GAAGNNNNNNTAC	2 cut(s)	1278, 1310
BbrPI	CACGTG	1 cut(s)	74
BbsI	GAAGAC	2 cut(s)	1067, 1473
Bbv12I	GWGCWC	4 cut(s)	697, 762, 1174, 1750
BbvCI	CCTCAGC	2 cut(s)	701, 916
BbvI	GCAGC	3 cut(s)	339, 715, 2090
BccI	CCATC	3 cut(s)	1113, 1606, 1699
BcgI	CGANNNNNNTGC	2 cut(s)	1960, 1994
BciT130I	CCWGG	2 cut(s)	711, 996
BciVI	GTATCC	1 cut(s)	1814
BcnI	CCSGG	3 cut(s)	1282, 1283, 1789
BcoDI	GTCTC	3 cut(s)	937, 1532, 1990
BfaI	CTAG	8 cut(s)	504, 530, 1010, 1214, 1298, 1350, 1649, 2119
BfmI	CTRYAG	3 cut(s)	477, 729, 2104
BfuI	GTATCC	1 cut(s)	1814
BisI	GCNGC	3 cut(s)	328, 729, 2104
BlsI	GCNGC	3 cut(s)	329, 730, 2105
Bme1390I	CCNGG	5 cut(s)	711, 996, 1282, 1283, 1789
Bme18I	GGWCC	1 cut(s)	1837
BmeT110I	CYCGRG	3 cut(s)	424, 761, 1281
BmgT120I	GGNCC	2 cut(s)	500, 1837
BmiI	GGNNCC	1 cut(s)	1552
BmrFI	CCNGG	5 cut(s)	711, 996, 1282, 1283, 1789
BmsI	GCATC	7 cut(s)	637, 1119, 1663, 1931, 1958, 2034, 2090
BpiI	GAAGAC	2 cut(s)	1067, 1473
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	2 cut(s)	701, 916
BpuEI	CTTGAG	2 cut(s)	1894, 2014
BpuMI	CCSGG	3 cut(s)	1282, 1283, 1789
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	5 cut(s)	425, 1280, 1281, 1365, 1545
BsaWI	WCCGGW	1 cut(s)	1636
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 899, 1612
Bse118I	RCCGGY	3 cut(s)	316, 1636, 1839
Bse1I	ACTGG	4 cut(s)	1259, 1450, 1649, 1859
Bse3DI	GCAATG	2 cut(s)	935, 1966
BseBI	CCWGG	2 cut(s)	711, 996
BseDI	CCNNGG	5 cut(s)	425, 1280, 1281, 1365, 1545
BseGI	GGATG	5 cut(s)	460, 1110, 1710, 1973, 1990
BseLI	CCNNNNNNNGG	3 cut(s)	295, 899, 1612
BseMI	GCAATG	2 cut(s)	935, 1966
BseMII	CTCAG	3 cut(s)	692, 930, 955
BseNI	ACTGG	4 cut(s)	1259, 1450, 1649, 1859
BseRI	GAGGAG	4 cut(s)	213, 442, 1675, 1938
BseSI	GKGCMC	2 cut(s)	1174, 1758
BseXI	GCAGC	3 cut(s)	339, 715, 2090
BseYI	CCCAGC	1 cut(s)	795
BsgI	GTGCAG	1 cut(s)	2116
Bsh1236I	CGCG	3 cut(s)	779, 1026, 1276
Bsh1285I	CGRYCG	1 cut(s)	1024
BshFI	GGCC	6 cut(s)	475, 501, 1104, 1210, 1497, 1736
BshTI	ACCGGT	1 cut(s)	1636
BsiEI	CGRYCG	1 cut(s)	1024
BsiHKAI	GWGCWC	4 cut(s)	697, 762, 1174, 1750
BsiHKCI	CYCGRG	3 cut(s)	424, 761, 1281
BsiSI	CCGG	6 cut(s)	317, 1207, 1282, 1637, 1788, 1840
BslFI	GGGAC	2 cut(s)	1263, 1679
BslI	CCNNNNNNNGG	3 cut(s)	295, 899, 1612
BsmAI	GTCTC	3 cut(s)	937, 1532, 1990
BsmFI	GGGAC	2 cut(s)	1263, 1679
BsmI	GAATGC	2 cut(s)	1676, 1944
BsnI	GGCC	6 cut(s)	475, 501, 1104, 1210, 1497, 1736
BsoBI	CYCGRG	3 cut(s)	424, 761, 1281
Bsp1286I	GDGCHC	7 cut(s)	425, 697, 762, 1174, 1750, 1758, 1794
Bsp143I	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
BspACI	CCGC	5 cut(s)	325, 779, 1412, 1519, 1632
BspANI	GGCC	6 cut(s)	475, 501, 1104, 1210, 1497, 1736
BspCNI	CTCAG	3 cut(s)	693, 929, 954
BspFNI	CGCG	3 cut(s)	779, 1026, 1276
BspLI	GGNNCC	1 cut(s)	1552
BspMAI	CTGCAG	3 cut(s)	481, 733, 2108
BspPI	GGATC	4 cut(s)	808, 1048, 1072, 1807
BsrBI	CCGCTC	2 cut(s)	1412, 1519
BsrDI	GCAATG	2 cut(s)	935, 1966
BsrFI	RCCGGY	3 cut(s)	316, 1636, 1839
BsrI	ACTGG	4 cut(s)	1259, 1450, 1649, 1859
BssAI	RCCGGY	3 cut(s)	316, 1636, 1839
BssECI	CCNNGG	5 cut(s)	425, 1280, 1281, 1365, 1545
BssMI	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
BssT1I	CCWWGG	2 cut(s)	1365, 1545
Bst2UI	CCWGG	2 cut(s)	711, 996
Bst4CI	ACNGT	4 cut(s)	202, 670, 692, 1051
Bst6I	CTCTTC	2 cut(s)	176, 286
BstAPI	GCANNNNNTGC	2 cut(s)	476, 2103
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	4 cut(s)	477, 499, 1102, 1738
BstDEI	CTNAG	4 cut(s)	701, 916, 941, 1243
BstF5I	GGATG	5 cut(s)	460, 1110, 1710, 1973, 1990
BstFNI	CGCG	3 cut(s)	779, 1026, 1276
BstHHI	GCGC	2 cut(s)	834, 1276
BstKTI	GATC	6 cut(s)	486, 803, 1024, 1056, 1067, 1802
BstMAI	GTCTC	3 cut(s)	937, 1532, 1990
BstMBI	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
BstMCI	CGRYCG	1 cut(s)	1024
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 1370, 1494, 2103
BstNI	CCWGG	2 cut(s)	711, 996
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	5 cut(s)	709, 994, 1280, 1281, 1787
BstSFI	CTRYAG	3 cut(s)	477, 729, 2104
BstSLI	GKGCMC	2 cut(s)	1174, 1758
BstUI	CGCG	3 cut(s)	779, 1026, 1276
BstV1I	GCAGC	3 cut(s)	339, 715, 2090
BstV2I	GAAGAC	2 cut(s)	1067, 1473
BstX2I	RGATCY	1 cut(s)	1799
BstXI	CCANNNNNNTGG	1 cut(s)	1854
BstYI	RGATCY	1 cut(s)	1799
BsuI	GTATCC	1 cut(s)	1814
BsuRI	GGCC	6 cut(s)	475, 501, 1104, 1210, 1497, 1736
BtgZI	GCGATG	1 cut(s)	1091
BtsCI	GGATG	5 cut(s)	460, 1110, 1710, 1973, 1990
BtsI	GCAGTG	2 cut(s)	486, 524
BtsIMutI	CAGTG	4 cut(s)	486, 524, 697, 1750
Cac8I	GCNNGC	4 cut(s)	477, 499, 1102, 1738
CaiI	CAGNNNCTG	1 cut(s)	2103
CfoI	GCGC	2 cut(s)	834, 1276
Cfr10I	RCCGGY	3 cut(s)	316, 1636, 1839
Cfr13I	GGNCC	2 cut(s)	500, 1837
Cfr9I	CCCGGG	1 cut(s)	1281
CseI	GACGC	1 cut(s)	1265
CsiI	ACCWGGT	1 cut(s)	994
Csp6I	GTAC	3 cut(s)	770, 1382, 1888
CspAI	ACCGGT	1 cut(s)	1636
CviAII	CATG	9 cut(s)	41, 295, 773, 926, 1121, 1717, 1768, 1795, 1864
CviQI	GTAC	3 cut(s)	770, 1382, 1888
DdeI	CTNAG	4 cut(s)	701, 916, 941, 1243
DpnI	GATC	6 cut(s)	485, 802, 1023, 1055, 1066, 1801
DpnII	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
DraI	TTTAAA	1 cut(s)	2010
EaeI	YGGCCR	1 cut(s)	1102
Eam1104I	CTCTTC	2 cut(s)	176, 286
EarI	CTCTTC	2 cut(s)	176, 286
Ecl136II	GAGCTC	1 cut(s)	760
Eco130I	CCWWGG	2 cut(s)	1365, 1545
Eco147I	AGGCCT	2 cut(s)	475, 1497
Eco24I	GRGCYC	3 cut(s)	425, 762, 1794
Eco32I	GATATC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	1837
Eco53kI	GAGCTC	1 cut(s)	760
Eco57I	CTGAAG	5 cut(s)	470, 882, 1164, 1444, 1726
Eco72I	CACGTG	1 cut(s)	74
Eco88I	CYCGRG	3 cut(s)	424, 761, 1281
EcoICRI	GAGCTC	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	1136
EcoRII	CCWGG	2 cut(s)	709, 994
EcoRV	GATATC	1 cut(s)	552
EcoT14I	CCWWGG	2 cut(s)	1365, 1545
EcoT22I	ATGCAT	2 cut(s)	1678, 1946
EcoT38I	GRGCYC	3 cut(s)	425, 762, 1794
ErhI	CCWWGG	2 cut(s)	1365, 1545
FaeI	CATG	9 cut(s)	44, 298, 776, 929, 1124, 1720, 1771, 1798, 1867
FaqI	GGGAC	2 cut(s)	1263, 1679
FatI	CATG	9 cut(s)	40, 294, 772, 925, 1120, 1716, 1767, 1794, 1863
FauI	CCCGC	2 cut(s)	332, 772
FblI	GTMKAC	1 cut(s)	1263
Fnu4HI	GCNGC	3 cut(s)	328, 729, 2104
FokI	GGATG	5 cut(s)	467, 1097, 1717, 1980, 1997
FriOI	GRGCYC	3 cut(s)	425, 762, 1794
Fsp4HI	GCNGC	3 cut(s)	328, 729, 2104
FspBI	CTAG	8 cut(s)	504, 530, 1010, 1214, 1298, 1350, 1649, 2119
GlaI	GCGC	2 cut(s)	833, 1275
GluI	GCNGC	3 cut(s)	328, 729, 2104
GsaI	CCCAGC	1 cut(s)	799
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	6 cut(s)	475, 501, 1104, 1210, 1497, 1736
HapII	CCGG	6 cut(s)	317, 1207, 1282, 1637, 1788, 1840
HgaI	GACGC	1 cut(s)	1265
HhaI	GCGC	2 cut(s)	834, 1276
Hin1II	CATG	9 cut(s)	44, 298, 776, 929, 1124, 1720, 1771, 1798, 1867
Hin6I	GCGC	2 cut(s)	832, 1274
HinP1I	GCGC	2 cut(s)	832, 1274
HincII	GTYRAC	1 cut(s)	1126
HindII	GTYRAC	1 cut(s)	1126
HindIII	AAGCTT	2 cut(s)	158, 1253
HinfI	GANTC	7 cut(s)	387, 535, 789, 908, 1005, 1377, 1876
HpaI	GTTAAC	1 cut(s)	1126
HpaII	CCGG	6 cut(s)	317, 1207, 1282, 1637, 1788, 1840
HphI	GGTGA	5 cut(s)	584, 595, 836, 980, 1621
Hpy166II	GTNNAC	5 cut(s)	1126, 1172, 1264, 1629, 1642
Hpy188I	TCNGA	7 cut(s)	438, 450, 944, 1004, 1183, 1388, 1655
Hpy188III	TCNNGA	8 cut(s)	108, 786, 979, 1156, 1214, 1702, 1818, 1993
Hpy8I	GTNNAC	5 cut(s)	1126, 1172, 1264, 1629, 1642
HpyAV	CCTTC	7 cut(s)	132, 445, 748, 1468, 1487, 1929, 1958
HpyCH4III	ACNGT	4 cut(s)	202, 670, 692, 1051
HpyCH4IV	ACGT	2 cut(s)	68, 73
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 1370, 1494, 2103
HpyF3I	CTNAG	4 cut(s)	701, 916, 941, 1243
HpySE526I	ACGT	2 cut(s)	68, 73
Hsp92II	CATG	9 cut(s)	44, 298, 776, 929, 1124, 1720, 1771, 1798, 1867
HspAI	GCGC	2 cut(s)	832, 1274
KspAI	GTTAAC	1 cut(s)	1126
Kzo9I	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
LmnI	GCTCC	6 cut(s)	509, 757, 1409, 1422, 1550, 2028
Lsp1109I	GCAGC	3 cut(s)	339, 715, 2090
LweI	GCATC	7 cut(s)	637, 1119, 1663, 1931, 1958, 2034, 2090
MabI	ACCWGGT	1 cut(s)	994
MaeI	CTAG	8 cut(s)	504, 530, 1010, 1214, 1298, 1350, 1649, 2119
MaeII	ACGT	2 cut(s)	68, 73
MaeIII	GTNAC	6 cut(s)	64, 69, 101, 634, 660, 1345
MalI	GATC	6 cut(s)	485, 802, 1023, 1055, 1066, 1801
MbiI	CCGCTC	2 cut(s)	1412, 1519
MboI	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
MboII	GAAGA	7 cut(s)	163, 273, 686, 1067, 1317, 1473, 1703
MfeI	CAATTG	1 cut(s)	1337
MflI	RGATCY	1 cut(s)	1799
MhlI	GDGCHC	7 cut(s)	425, 697, 762, 1174, 1750, 1758, 1794
MlsI	TGGCCA	1 cut(s)	1104
MluNI	TGGCCA	1 cut(s)	1104
MlyI	GAGTC	2 cut(s)	798, 1885
MmeI	TCCRAC	3 cut(s)	885, 1387, 1633
Mox20I	TGGCCA	1 cut(s)	1104
Mph1103I	ATGCAT	2 cut(s)	1678, 1946
MscI	TGGCCA	1 cut(s)	1104
MseI	TTAA	5 cut(s)	14, 23, 1125, 1401, 2009
MslI	CAYNNNNRTG	1 cut(s)	2023
Msp20I	TGGCCA	1 cut(s)	1104
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	6 cut(s)	317, 1207, 1282, 1637, 1788, 1840
MspR9I	CCNGG	5 cut(s)	711, 996, 1282, 1283, 1789
MunI	CAATTG	1 cut(s)	1337
Mva1269I	GAATGC	2 cut(s)	1676, 1944
MvaI	CCWGG	2 cut(s)	711, 996
MvnI	CGCG	3 cut(s)	779, 1026, 1276
MwoI	GCNNNNNNNGC	4 cut(s)	476, 1370, 1494, 2103
NciI	CCSGG	3 cut(s)	1282, 1283, 1789
NdeII	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
NlaIII	CATG	9 cut(s)	44, 298, 776, 929, 1124, 1720, 1771, 1798, 1867
NlaIV	GGNNCC	1 cut(s)	1552
NmuCI	GTSAC	3 cut(s)	69, 634, 1345
NsiI	ATGCAT	2 cut(s)	1678, 1946
NspI	RCATGY	1 cut(s)	776
PceI	AGGCCT	2 cut(s)	475, 1497
PciI	ACATGT	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PctI	GAATGC	2 cut(s)	1676, 1944
PfeI	GAWTC	5 cut(s)	387, 535, 908, 1005, 1377
PflMI	CCANNNNNTGG	1 cut(s)	295
PinAI	ACCGGT	1 cut(s)	1636
PkrI	GCNGC	3 cut(s)	329, 730, 2105
Ple19I	CGATCG	1 cut(s)	1024
PleI	GAGTC	2 cut(s)	797, 1884
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
PpsI	GAGTC	2 cut(s)	797, 1884
Ppu21I	YACGTR	1 cut(s)	74
PscI	ACATGT	1 cut(s)	772
PshBI	ATTAAT	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	1907
Psp124BI	GAGCTC	1 cut(s)	762
Psp6I	CCWGG	2 cut(s)	709, 994
PspCI	CACGTG	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	795
PspGI	CCWGG	2 cut(s)	709, 994
PspN4I	GGNNCC	1 cut(s)	1552
PspPI	GGNCC	2 cut(s)	500, 1837
PstI	CTGCAG	3 cut(s)	481, 733, 2108
PstNI	CAGNNNCTG	1 cut(s)	2103
PsuI	RGATCY	1 cut(s)	1799
PvuI	CGATCG	1 cut(s)	1024
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	3 cut(s)	771, 1383, 1889
RsaNI	GTAC	3 cut(s)	770, 1382, 1888
RseI	CAYNNNNRTG	1 cut(s)	2023
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	5 cut(s)	14, 23, 1125, 1401, 2009
SatI	GCNGC	3 cut(s)	328, 729, 2104
Sau3AI	GATC	6 cut(s)	483, 800, 1021, 1053, 1064, 1799
Sau96I	GGNCC	2 cut(s)	500, 1837
SchI	GAGTC	2 cut(s)	798, 1885
ScrFI	CCNGG	5 cut(s)	711, 996, 1282, 1283, 1789
SduI	GDGCHC	7 cut(s)	425, 697, 762, 1174, 1750, 1758, 1794
SexAI	ACCWGGT	1 cut(s)	994
SfaNI	GCATC	7 cut(s)	637, 1119, 1663, 1931, 1958, 2034, 2090
SfcI	CTRYAG	3 cut(s)	477, 729, 2104
SinI	GGWCC	1 cut(s)	1837
SmaI	CCCGGG	1 cut(s)	1283
SmiMI	CAYNNNNRTG	1 cut(s)	2023
SmlI	CTYRAG	2 cut(s)	1873, 1993
SmoI	CTYRAG	2 cut(s)	1873, 1993
SseBI	AGGCCT	2 cut(s)	475, 1497
SsiI	CCGC	5 cut(s)	325, 779, 1412, 1519, 1632
SspMI	CTAG	8 cut(s)	504, 530, 1010, 1214, 1298, 1350, 1649, 2119
SstI	GAGCTC	1 cut(s)	762
StuI	AGGCCT	2 cut(s)	475, 1497
StyD4I	CCNGG	5 cut(s)	709, 994, 1280, 1281, 1787
StyI	CCWWGG	2 cut(s)	1365, 1545
TaaI	ACNGT	4 cut(s)	202, 670, 692, 1051
TaiI	ACGT	2 cut(s)	71, 76
TaqI	TCGA	8 cut(s)	86, 95, 390, 842, 1020, 1134, 1558, 1896
TfiI	GAWTC	5 cut(s)	387, 535, 908, 1005, 1377
Tru1I	TTAA	5 cut(s)	14, 23, 1125, 1401, 2009
Tru9I	TTAA	5 cut(s)	14, 23, 1125, 1401, 2009
TscAI	CASTG	4 cut(s)	493, 531, 697, 1750
TseFI	GTSAC	3 cut(s)	69, 634, 1345
TseI	GCWGC	3 cut(s)	327, 728, 2103
Tsp45I	GTSAC	3 cut(s)	69, 634, 1345
TspGWI	ACGGA	2 cut(s)	648, 1935
TspMI	CCCGGG	1 cut(s)	1281
TspRI	CASTG	4 cut(s)	493, 531, 697, 1750
Van91I	CCANNNNNTGG	1 cut(s)	295
VneI	GTGCAC	1 cut(s)	1170
VpaK11BI	GGWCC	1 cut(s)	1837
VspI	ATTAAT	1 cut(s)	23
XapI	RAATTY	3 cut(s)	111, 401, 1136
XbaI	TCTAGA	1 cut(s)	1213
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1729, 1765
XmaI	CCCGGG	1 cut(s)	1281
XmiI	GTMKAC	1 cut(s)	1263
XspI	CTAG	8 cut(s)	504, 530, 1010, 1214, 1298, 1350, 1649, 2119
Zsp2I	ATGCAT	2 cut(s)	1678, 1946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.