Prupe.3G122400_v2.0.a1

ABC transporter

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
10907626 .. 10909866
2241 bp
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UTR
Exon/CDS
Intron
Prupe.3G122400.2

Sequence Viewer

Length: 1413 bp
ATGGAGTTACTAACAAAGGCACAGAATACCATGACTGGCAAGAAAACCCAATACAGAATTAAGACCAAGAAACTTTGTTACAGATTATCTTCCACAGTTGATCAGTTCAAGTGGCTGTTCAAGAGGGAGGTGACCCCTAAAGCATACATCTTGAAGAATGTCAATTTTGAAGCTAGACCGGGAGAGATCACAGCTATTGCGGGTGCAAGCGGAGCAGGAAAGACAACATTGCTAGAAATAGTAGCTGGTATGATCCCTCTAAGTAGTACTGCTGGCCAAGTTATTGTCAATGACCAGCCAATGAATGCTCAACATTTTCGGAGAGTATCAGGTTATGTCACTCAAGAAGAAGCCCTCTTCCCACTTCTTACTGTGGAAGAAACACTCTTGTACAGTGCTCGTTTAAGGTTCCATGGTGTGCACCAAAAGGCCACAGCTAGAGTGAGTGAGCTACTGAGGGAGCTTGGACTACAACATGTTGCCGATGTAAGAATTGGTAGTGAATCTAACCGCGGCATATCAGGCGGTGAAAAACGCAGAGTCTCCATTGGAGTGGACCTAGTACATGATCCGGCTGTTCTTTTGCTGGATGAGCCTACATCAGGATTGGATTCGTCGTCAGCACTTGATGTAGCCTTGTTGCTTAAAACTATGGCTTCAACACAAGGATTTGTGCTGGGTACTATTTTTATGAATGCTGCTAATGACCCAAGAAGAGCTAAATTACAAACACAAATTGGGTTTTTTGCCTTCAGCCTCACCTTCTTGATGTCTTCTGCAACTGAAGGACTACCAATTTACCTGCAAGAGAGGAGAATATTGATGAGGGAAACCTCAAGAGGTGCTTATAGAATCTCTTCTTATGTCATATCAAACACTCTAGTATTCCTTCCTTTCCTATTAGGTGTGGCTCTTCTCTATGCTACCCCAGTCTACTGGTTAGTTGGATTAAGAAGGGAAATTGATGGGTTTCTCTACTTTTCACTGGTGGTGTGGATGGTCATTTTGATGTCAAATTCTTTGGTTGCGTGCTTCAGCGCTCTAGTGCCGAACTTCATCATGGGAACATCTTTAGTGGCAGGGCTTATGGGTTCCTTCTTTCTATTTTCTGGGTTTTTCATCCCAAAGGAGGACATTCCCAGCTACTGGACTTTCATGCACTACTTGAGTTTATTTAAGTACCCACTTGAGTGTTTCCTGATAAATGAGTATGGGGGAGAGCAGGGAAGAAGGAGATGTTTGCAGAGTGTTGGAGGCGACTGCATTCTGTATGGTGACTGGTTCTTGATGCAGCAAGGTCTGAAACCATCACAGAAGTGGATCAACTTAGGTATAATGTTGGGTTTCATCATTGGTTACAGATGGCTTGGTTTTCTGATTCTGTGGTACAGATCTTACAGAATCAGTAAGTAG

Protein Analysis

471

Amino Acids

52.86

Weight (kDa)

9.49

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 810
AccB7I CCANNNNNTGG 1 cut(s) 1146
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 513
AciI CCGC 5 cut(s) 200, 210, 511, 513, 525
AclWI GGATC 3 cut(s) 247, 563, 1328
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 3 cut(s) 736, 804, 1018
AfaI GTAC 6 cut(s) 268, 392, 564, 682, 1181, 1388
AfeI AGCGCT 1 cut(s) 1039
AfiI CCNNNNNNNGG 3 cut(s) 602, 1129, 1146
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 5 cut(s) 109, 121, 154, 170, 660
AleI CACNNNNGTG 2 cut(s) 1189, 1315
AluBI AGCT 8 cut(s) 173, 194, 245, 437, 451, 463, 719, 1143
AluI AGCT 8 cut(s) 173, 194, 245, 437, 451, 463, 719, 1143
Alw21I GWGCWC 2 cut(s) 400, 423
Alw26I GTCTC 1 cut(s) 547
Alw44I GTGCAC 1 cut(s) 419
AlwI GGATC 3 cut(s) 247, 563, 1328
AlwNI CAGNNNCTG 1 cut(s) 1146
Aor51HI AGCGCT 1 cut(s) 1039
AoxI GGCC 2 cut(s) 274, 429
ApaLI GTGCAC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 698, 1291
ApoI RAATTY 1 cut(s) 1015
Asp700I GAANNNNTTC 1 cut(s) 856
AspLEI GCGC 1 cut(s) 1040
AspS9I GGNCC 1 cut(s) 556
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 142, 539, 751, 1286
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 423
BalI TGGCCA 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 765
Bbv12I GWGCWC 2 cut(s) 400, 423
BbvI GCAGC 2 cut(s) 685, 1303
BccI CCATC 4 cut(s) 959, 991, 1315, 1356
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 547
BfaI CTAG 6 cut(s) 174, 233, 438, 560, 881, 1043
BfoI RGCGCY 1 cut(s) 1041
BfuAI ACCTGC 1 cut(s) 810
BglII AGATCT 1 cut(s) 1391
BisI GCNGC 3 cut(s) 514, 699, 1292
BlsI GCNGC 3 cut(s) 515, 700, 1293
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 180
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 410, 1093
BmrFI CCNGG 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 923
BmsI GCATC 1 cut(s) 1278
BmuI ACTGGG 1 cut(s) 923
BpiI GAAGAC 1 cut(s) 765
BpuEI CTTGAG 4 cut(s) 327, 820, 1186, 1208
BpuMI CCSGG 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 412, 511
Bsc4I CCNNNNNNNGG 3 cut(s) 602, 1129, 1146
Bse1I ACTGG 6 cut(s) 40, 929, 941, 990, 1151, 1283
Bse3DI GCAATG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 412, 511
BseGI GGATG 3 cut(s) 595, 1002, 1119
BseLI CCNNNNNNNGG 3 cut(s) 602, 1129, 1146
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 6 cut(s) 40, 929, 941, 990, 1151, 1283
BseRI GAGGAG 1 cut(s) 826
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 2 cut(s) 685, 1303
BseYI CCCAGC 2 cut(s) 676, 1139
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 2 cut(s) 276, 431
BsiHKAI GWGCWC 2 cut(s) 400, 423
BsiSI CCGG 2 cut(s) 179, 572
BslI CCNNNNNNNGG 3 cut(s) 602, 1129, 1146
BsmAI GTCTC 1 cut(s) 547
BsmI GAATGC 3 cut(s) 310, 700, 1263
BsnI GGCC 2 cut(s) 276, 431
Bsp1286I GDGCHC 2 cut(s) 400, 423
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 5 cut(s) 200, 210, 511, 513, 525
BspANI GGCC 2 cut(s) 276, 431
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 410, 1093
BspMI ACCTGC 1 cut(s) 810
BspPI GGATC 3 cut(s) 247, 563, 1328
BspQI GCTCTTC 2 cut(s) 709, 918
BsrDI GCAATG 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 6 cut(s) 40, 929, 941, 990, 1151, 1283
BssECI CCNNGG 2 cut(s) 412, 511
BssMI GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
BssT1I CCWWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 97, 373, 395
Bst6I CTCTTC 4 cut(s) 362, 709, 862, 918
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 208, 274, 1030
BstDEI CTNAG 3 cut(s) 260, 455, 1327
BstDSI CCRYGG 2 cut(s) 412, 511
BstEII GGTNACC 1 cut(s) 130
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 3 cut(s) 595, 1002, 1119
BstFNI CGCG 1 cut(s) 513
BstH2I RGCGCY 1 cut(s) 1041
BstHHI GCGC 1 cut(s) 1040
BstKTI GATC 6 cut(s) 103, 189, 255, 571, 1323, 1394
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
BstMWI GCNNNNNNNGC 3 cut(s) 212, 522, 592
BstNSI RCATGY 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 685, 1303
BstV2I GAAGAC 1 cut(s) 765
BstX2I RGATCY 1 cut(s) 1391
BstXI CCANNNNNNTGG 2 cut(s) 553, 936
BstYI RGATCY 1 cut(s) 1391
BsuRI GGCC 2 cut(s) 276, 431
BtgI CCRYGG 2 cut(s) 412, 511
BtsCI GGATG 3 cut(s) 595, 1002, 1119
BtsIMutI CAGTG 2 cut(s) 400, 983
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 3 cut(s) 208, 274, 1030
CaiI CAGNNNCTG 1 cut(s) 1146
CfoI GCGC 1 cut(s) 1040
Cfr13I GGNCC 1 cut(s) 556
Cfr42I CCGCGG 1 cut(s) 514
Csp6I GTAC 6 cut(s) 267, 391, 563, 681, 1180, 1387
CviAII CATG 6 cut(s) 31, 413, 476, 566, 1060, 1156
CviQI GTAC 6 cut(s) 267, 391, 563, 681, 1180, 1387
DdeI CTNAG 3 cut(s) 260, 455, 1327
DpnI GATC 6 cut(s) 102, 188, 254, 570, 1322, 1393
DpnII GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 4 cut(s) 362, 709, 862, 918
EarI CTCTTC 4 cut(s) 362, 709, 862, 918
Eco130I CCWWGG 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 556
Eco47III AGCGCT 1 cut(s) 1039
Eco57I CTGAAG 3 cut(s) 736, 804, 1018
Eco91I GGTNACC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO65I GGTNACC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 6 cut(s) 34, 416, 479, 569, 1063, 1159
FalI AAGNNNNNCTT 2 cut(s) 829, 861
FatI CATG 6 cut(s) 30, 412, 475, 565, 1059, 1155
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 3 cut(s) 514, 699, 1292
FokI GGATG 3 cut(s) 602, 1009, 1106
Fsp4HI GCNGC 3 cut(s) 514, 699, 1292
FspBI CTAG 6 cut(s) 174, 233, 438, 560, 881, 1043
GlaI GCGC 1 cut(s) 1039
GluI GCNGC 3 cut(s) 514, 699, 1292
GsaI CCCAGC 2 cut(s) 680, 1143
HaeII RGCGCY 1 cut(s) 1041
HaeIII GGCC 2 cut(s) 276, 431
HapII CCGG 2 cut(s) 179, 572
HhaI GCGC 1 cut(s) 1040
Hin1II CATG 6 cut(s) 34, 416, 479, 569, 1063, 1159
Hin6I GCGC 1 cut(s) 1038
HinP1I GCGC 1 cut(s) 1038
HinfI GANTC 6 cut(s) 503, 540, 611, 852, 1378, 1401
HpaII CCGG 2 cut(s) 179, 572
HphI GGTGA 4 cut(s) 142, 539, 751, 1286
Hpy166II GTNNAC 3 cut(s) 421, 556, 934
Hpy188I TCNGA 3 cut(s) 321, 1302, 1377
Hpy188III TCNNGA 8 cut(s) 121, 151, 344, 603, 766, 837, 1198, 1285
Hpy8I GTNNAC 3 cut(s) 421, 556, 934
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 7 cut(s) 760, 772, 779, 899, 948, 1105, 1224
HpyCH4III ACNGT 3 cut(s) 97, 373, 395
HpyCH4V TGCA 8 cut(s) 206, 421, 779, 805, 1159, 1243, 1263, 1291
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 522, 592
HpyF3I CTNAG 3 cut(s) 260, 455, 1327
Hsp92II CATG 6 cut(s) 34, 416, 479, 569, 1063, 1159
HspAI GCGC 1 cut(s) 1038
Ksp22I TGATCA 1 cut(s) 100
KspI CCGCGG 1 cut(s) 514
Kzo9I GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
LguI GCTCTTC 2 cut(s) 709, 918
LmnI GCTCC 2 cut(s) 212, 460
Lsp1109I GCAGC 2 cut(s) 685, 1303
LweI GCATC 1 cut(s) 1278
MaeI CTAG 6 cut(s) 174, 233, 438, 560, 881, 1043
MaeIII GTNAC 6 cut(s) 6, 77, 130, 337, 1274, 1355
MalI GATC 6 cut(s) 102, 188, 254, 570, 1322, 1393
MboI GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
MflI RGATCY 1 cut(s) 1391
MhlI GDGCHC 2 cut(s) 400, 423
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 8 cut(s) 57, 163, 492, 722, 735, 795, 960, 1015
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 2 cut(s) 925, 1231
Mox20I TGGCCA 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 856
MscI TGGCCA 1 cut(s) 276
MseI TTAA 5 cut(s) 60, 404, 645, 950, 1176
MslI CAYNNNNRTG 4 cut(s) 551, 1007, 1189, 1315
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 513
MspI CCGG 2 cut(s) 179, 572
MspR9I CCNGG 1 cut(s) 180
Mva1269I GAATGC 3 cut(s) 310, 700, 1263
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 3 cut(s) 212, 522, 592
NciI CCSGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 412
NdeII GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
NlaIII CATG 6 cut(s) 34, 416, 479, 569, 1063, 1159
NlaIV GGNNCC 2 cut(s) 410, 1093
NmuCI GTSAC 3 cut(s) 130, 337, 1274
NspI RCATGY 1 cut(s) 479
OliI CACNNNNGTG 2 cut(s) 1189, 1315
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 2 cut(s) 709, 918
PctI GAATGC 3 cut(s) 310, 700, 1263
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 5 cut(s) 503, 611, 852, 1378, 1401
PflMI CCANNNNNTGG 1 cut(s) 1146
PkrI GCNGC 3 cut(s) 515, 700, 1293
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
PscI ACATGT 1 cut(s) 475
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 2 cut(s) 676, 1139
PspN4I GGNNCC 2 cut(s) 410, 1093
PspPI GGNCC 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 1146
PsuI RGATCY 1 cut(s) 1391
RsaI GTAC 6 cut(s) 268, 392, 564, 682, 1181, 1388
RsaNI GTAC 6 cut(s) 267, 391, 563, 681, 1180, 1387
RseI CAYNNNNRTG 4 cut(s) 551, 1007, 1189, 1315
SacII CCGCGG 1 cut(s) 514
SapI GCTCTTC 2 cut(s) 709, 918
SaqAI TTAA 5 cut(s) 60, 404, 645, 950, 1176
SatI GCNGC 3 cut(s) 514, 699, 1292
Sau3AI GATC 6 cut(s) 100, 186, 252, 568, 1320, 1391
Sau96I GGNCC 1 cut(s) 556
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 2 cut(s) 400, 423
SfaNI GCATC 1 cut(s) 1278
Sfr303I CCGCGG 1 cut(s) 514
SgrBI CCGCGG 1 cut(s) 514
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 4 cut(s) 551, 1007, 1189, 1315
SmlI CTYRAG 4 cut(s) 342, 835, 1165, 1187
SmoI CTYRAG 4 cut(s) 342, 835, 1165, 1187
Sse9I AATT 8 cut(s) 57, 163, 492, 722, 735, 795, 960, 1015
SsiI CCGC 5 cut(s) 200, 210, 511, 513, 525
SspI AATATT 1 cut(s) 819
SspMI CTAG 6 cut(s) 174, 233, 438, 560, 881, 1043
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 97, 373, 395
TasI AATT 8 cut(s) 57, 163, 492, 722, 735, 795, 960, 1015
TatI WGTACW 3 cut(s) 266, 390, 562
TauI GCSGC 1 cut(s) 516
TfiI GAWTC 5 cut(s) 503, 611, 852, 1378, 1401
Tru1I TTAA 5 cut(s) 60, 404, 645, 950, 1176
Tru9I TTAA 5 cut(s) 60, 404, 645, 950, 1176
TscAI CASTG 2 cut(s) 400, 990
TseFI GTSAC 3 cut(s) 130, 337, 1274
TseI GCWGC 2 cut(s) 698, 1291
Tsp45I GTSAC 3 cut(s) 130, 337, 1274
TspDTI ATGAA 6 cut(s) 317, 707, 1045, 1108, 1144, 1336
TspRI CASTG 2 cut(s) 400, 990
Van91I CCANNNNNTGG 1 cut(s) 1146
VneI GTGCAC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 556
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 1 cut(s) 1015
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 1314
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 6 cut(s) 174, 233, 438, 560, 881, 1043
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.