FvH4_6g28220

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21726881 .. 21729588
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28220.t1

Sequence Viewer

Length: 1638 bp
ATGCACCACTGGGGTCCTAAAAGCCAGCCCTTCCTCTTTTGTTCTCTTGCCAAACTCCAACCCCTAAGAATCTCTCCCACTCTCTCCCTCTCCCTCACAAACACAACCATATATTGTCTTCCTTCCATTCTTGATCTGCACCACCACATTTCCTTATATTCATCATCCAAAAGTACAATGGCTGATGCAAATCCTCTTTCGCAGTTTTTTCTGTTTTTGTTTCTTGTTTGCCTCGCTACTTGCAGAAATGGGGTTCAGGGTTTTAGAGAGAAGAACAAGGTGCTTGACCTGCAAGAGTTTCGTTCGAAGCAGCATAGTGGAACTGGAACCAGGACTAGTGCCTGCCTCTCCCAGAAATCAAGAAAGGAAAAAGGTGCAACTATATTGGAAATAAAACACAGAGATTATTGCTCAGCTGGGAAGATTGTTAACTGGAACAAAAAGCAACAGAAACGTTTAATGTTGGATGATCTTCATGTTCGGTTTCTACAATCCCAATTTCGAAACAGGATTTCTGGCATTGCTACAAAAGATGTATCAGAAGCTCAAATTCCATTAACTTCTGGCGTAAGGCTAGAAACACTAAACTACATTGTAACTGTGGAATTGGGTGGTAGAAATATGACAGTGATAGTGGACACAGGCAGTGACTTGACTTGGGTTCAATGCCGACCTTGTAAATTGTGTTACAATCAACAAGAACCTCTCTTCAACCCTTCTGAATCTAAATCATACCAATCAGTTTTATGCAACTCAACAAATTGTCAGGCTCTCCAGTTTGCTACTGGGAACTCAGGAGTGTGTGGGAGCAATCCTCAGACTTGCAACTATGTTGTGAACTATGGTGATGGCTCCTATACTCGGGGTGAGCTTGCTAGAGACCATATCATTCTTGGAACTACACTAGTGGACAATTTTGTGTTTGGTTGTGGCAGAAACAACAAGGGTCTGTTTGGGGGAGCTTCTGGTTTAATGGGTTTGGGAAGGAGTGATGGTCTCTCGGTGGTTTCTCAAACATCTGGCTTATTTGGTGGAGTTTTCTCTTACTGTTTACCTTCAACAGAAGCTGCAGAATCTGGTTCATTAGTTATGGGTGGAGATTCTTCAATCTACAAGAATTCAACTCCCATCTCTTACACTAGAATGGTTGCAAATCCACAGCTATCCACCTTCTATTTTCTAAATCTAACCGGTATAAGTATTGGGGGAGTGGCTTTACAAGTTCCTAGCTTTGCAAGTGGTGGGATTCTGATTGATTCTGGGACAGTTATTTCAAGGCTGCCTCCTTCAGTTTACAAGGCAATCAAGGCAGAGTTCCTGAAGCAGTTTTCCGGGTACCCTCCAGCACCGGGTTTTTCAATTTTGGACACTTGTTTCAACCTTAGTTCGTATCAAGAAGTTAACATTCCTACAATGAAGATGCACTTTGAGGGAGATGCAGAGCTGACTGTGGATGTAACCGGAATTTTTTATATGGTGAAGACCGATGCATCACAGATCTGTTTGGCTCTTGCAAGTCTTTCATACGAAGATGAGGTGGCAATAATTGGGAATTATCAGCAGAGAAACCAAAGGGTTGTATACAATACTAAAGAATCTAAGCTAGGATTTGCAGAAGAATCATGCAGCTTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

546

Amino Acids

59.7

Weight (kDa)

8.53

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 197 - 366 8.6e-49 Xylanase inhibitor N-terminal
Asp PF00026 197 - 539 8.2e-23 Eukaryotic aspartyl protease
TAXi_C PF14541 392 - 538 4.7e-30 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016619)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79720
fragaria_vesca FvH4_6g28220
malus_domestica MD09G1228000.v1.1
prunus_persica Prupe.3G103900_v2.0.a1
pyrus_communis pycom09g14720
rosa_chinensis RchiOBHm_Chr2g0132281
rosa_laevigata RLG00000019243
rosa_roxburghii Rroxscaffold_2G00112200
rosa_rugosa Rorug02G0303400
rosa_samantha Rh2AG356400 Rh2BG362800 Rh2CG339900 Rh2DG379700
rosa_wichuraiana Rw2G028980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
Acc65I GGTACC 1 cut(s) 1335
AccB1I GGYRCC 1 cut(s) 1335
AccI GTMKAC 1 cut(s) 1581
AclI AACGTT 1 cut(s) 454
AcsI RAATTY 3 cut(s) 549, 1117, 1464
AcuI CTGAAG 2 cut(s) 1272, 1340
AfaI GTAC 2 cut(s) 175, 1337
AfiI CCNNNNNNNGG 2 cut(s) 861, 1349
AgeI ACCGGT 1 cut(s) 1190
AgsI TTSAA 8 cut(s) 665, 712, 1059, 1107, 1122, 1275, 1359, 1378
AhlI ACTAGT 2 cut(s) 335, 904
AjnI CCWGG 1 cut(s) 329
Alw26I GTCTC 2 cut(s) 873, 1001
AlwNI CAGNNNCTG 2 cut(s) 1067, 1076
Ama87I CYCGRG 1 cut(s) 861
ApeKI GCWGC 4 cut(s) 310, 1067, 1279, 1626
ApoI RAATTY 3 cut(s) 549, 1117, 1464
AsiGI ACCGGT 1 cut(s) 1190
Asp718I GGTACC 1 cut(s) 1335
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 1333, 1350
AsuHPI GGTGA 3 cut(s) 857, 878, 1489
AsuII TTCGAA 2 cut(s) 305, 502
AvaI CYCGRG 1 cut(s) 861
AvaII GGWCC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 1335
BbsI GAAGAC 2 cut(s) 110, 1487
BbvI GCAGC 3 cut(s) 322, 1054, 1266
BccI CCATC 3 cut(s) 842, 986, 1136
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 2 cut(s) 1333, 1350
BcoDI GTCTC 2 cut(s) 873, 1001
BcuI ACTAGT 2 cut(s) 335, 904
BfaI CTAG 7 cut(s) 336, 575, 876, 905, 1140, 1227, 1604
BfmI CTRYAG 1 cut(s) 1068
BfuAI ACCTGC 1 cut(s) 297
BglII AGATCT 1 cut(s) 1497
BisI GCNGC 4 cut(s) 311, 1068, 1280, 1627
BlpI GCTNAGC 1 cut(s) 412
BlsI GCNGC 4 cut(s) 312, 1069, 1281, 1628
Bme1390I CCNGG 3 cut(s) 331, 1333, 1350
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 861
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 4 cut(s) 15, 328, 853, 1337
BmrFI CCNGG 3 cut(s) 331, 1333, 1350
BmrI ACTGGG 2 cut(s) 19, 795
BmsI GCATC 5 cut(s) 175, 1410, 1426, 1477, 1499
BmuI ACTGGG 2 cut(s) 19, 795
BpiI GAAGAC 2 cut(s) 110, 1487
BplI GAGNNNNNCTC 2 cut(s) 799, 831
BpmI CTGGAG 2 cut(s) 758, 1326
Bpu1102I GCTNAGC 1 cut(s) 412
Bpu14I TTCGAA 2 cut(s) 305, 502
BpuMI CCSGG 2 cut(s) 1333, 1350
BsaBI GATNNNNATC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 873, 1001
BsaWI WCCGGW 2 cut(s) 1190, 1460
BsaXI ACNNNNNCTCC 2 cut(s) 979, 1009
Bsc4I CCNNNNNNNGG 2 cut(s) 861, 1349
Bse118I RCCGGY 1 cut(s) 1190
Bse1I ACTGG 5 cut(s) 14, 328, 437, 775, 790
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 331
BseGI GGATG 3 cut(s) 164, 472, 1459
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 861, 1349
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 3 cut(s) 426, 807, 830
BseNI ACTGG 5 cut(s) 14, 328, 437, 775, 790
BseXI GCAGC 3 cut(s) 322, 1054, 1266
BseYI CCCAGC 1 cut(s) 416
BsgI GTGCAG 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 1335
BshTI ACCGGT 1 cut(s) 1190
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 4 cut(s) 1191, 1332, 1349, 1461
BslFI GGGAC 1 cut(s) 1276
BslI CCNNNNNNNGG 2 cut(s) 861, 1349
BsmAI GTCTC 2 cut(s) 873, 1001
BsmFI GGGAC 1 cut(s) 1276
Bso31I GGTCTC 2 cut(s) 873, 1001
BsoBI CYCGRG 1 cut(s) 861
Bsp119I TTCGAA 2 cut(s) 305, 502
Bsp143I GATC 3 cut(s) 133, 469, 1497
Bsp1720I GCTNAGC 1 cut(s) 412
BspCNI CTCAG 3 cut(s) 425, 806, 829
BspLI GGNNCC 4 cut(s) 15, 328, 853, 1337
BspMAI CTGCAG 1 cut(s) 1072
BspMI ACCTGC 1 cut(s) 297
BspT104I TTCGAA 2 cut(s) 305, 502
BspT107I GGYRCC 1 cut(s) 1335
BspTNI GGTCTC 2 cut(s) 873, 1001
BsrDI GCAATG 1 cut(s) 519
BsrFI RCCGGY 1 cut(s) 1190
BsrI ACTGG 5 cut(s) 14, 328, 437, 775, 790
BssAI RCCGGY 1 cut(s) 1190
BssMI GATC 3 cut(s) 133, 469, 1497
BssNAI GTATAC 1 cut(s) 1582
Bst1107I GTATAC 1 cut(s) 1582
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 5 cut(s) 601, 628, 1049, 1267, 1450
Bst6I CTCTTC 1 cut(s) 713
BstBI TTCGAA 2 cut(s) 305, 502
BstC8I GCNNGC 3 cut(s) 26, 343, 873
BstDEI CTNAG 6 cut(s) 65, 412, 793, 816, 1382, 1599
BstF5I GGATG 3 cut(s) 164, 472, 1459
BstKTI GATC 3 cut(s) 136, 472, 1500
BstMAI GTCTC 2 cut(s) 873, 1001
BstMBI GATC 3 cut(s) 133, 469, 1497
BstMWI GCNNNNNNNGC 2 cut(s) 289, 1307
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 3 cut(s) 329, 1331, 1348
BstSFI CTRYAG 1 cut(s) 1068
BstV1I GCAGC 3 cut(s) 322, 1054, 1266
BstV2I GAAGAC 2 cut(s) 110, 1487
BstX2I RGATCY 1 cut(s) 1497
BstYI RGATCY 1 cut(s) 1497
BstZ17I GTATAC 1 cut(s) 1582
BtsCI GGATG 3 cut(s) 164, 472, 1459
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 3 cut(s) 7, 633, 652
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 26, 343, 873
CaiI CAGNNNCTG 2 cut(s) 1067, 1076
Cfr10I RCCGGY 1 cut(s) 1190
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 174, 1336
CspAI ACCGGT 1 cut(s) 1190
CviAII CATG 2 cut(s) 476, 1623
CviQI GTAC 2 cut(s) 174, 1336
DdeI CTNAG 6 cut(s) 65, 412, 793, 816, 1382, 1599
DpnI GATC 3 cut(s) 135, 471, 1499
DpnII GATC 3 cut(s) 133, 469, 1497
Eam1104I CTCTTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 713
Eco31I GGTCTC 2 cut(s) 873, 1001
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 1272, 1340
Eco88I CYCGRG 1 cut(s) 861
EcoO109I RGGNCCY 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 1492
FaeI CATG 2 cut(s) 479, 1626
FalI AAGNNNNNCTT 2 cut(s) 1409, 1441
FaqI GGGAC 1 cut(s) 1276
FatI CATG 2 cut(s) 475, 1622
FblI GTMKAC 1 cut(s) 1581
Fnu4HI GCNGC 4 cut(s) 311, 1068, 1280, 1627
FokI GGATG 3 cut(s) 151, 479, 1466
Fsp4HI GCNGC 4 cut(s) 311, 1068, 1280, 1627
FspBI CTAG 7 cut(s) 336, 575, 876, 905, 1140, 1227, 1604
GluI GCNGC 4 cut(s) 311, 1068, 1280, 1627
GsaI CCCAGC 1 cut(s) 420
GsuI CTGGAG 2 cut(s) 758, 1326
HapII CCGG 4 cut(s) 1191, 1332, 1349, 1461
Hin1II CATG 2 cut(s) 479, 1626
HincII GTYRAC 2 cut(s) 430, 1402
HindII GTYRAC 2 cut(s) 430, 1402
HinfI GANTC 8 cut(s) 69, 722, 1073, 1100, 1246, 1256, 1595, 1619
HpaI GTTAAC 2 cut(s) 430, 1402
HpaII CCGG 4 cut(s) 1191, 1332, 1349, 1461
HphI GGTGA 3 cut(s) 857, 878, 1489
Hpy166II GTNNAC 8 cut(s) 430, 637, 838, 910, 1052, 1294, 1402, 1582
Hpy188I TCNGA 4 cut(s) 541, 721, 819, 1251
Hpy188III TCNNGA 5 cut(s) 131, 360, 795, 1318, 1394
Hpy8I GTNNAC 8 cut(s) 430, 637, 838, 910, 1052, 1294, 1402, 1582
HpyAV CCTTC 7 cut(s) 40, 132, 726, 978, 1065, 1180, 1296
HpyCH4III ACNGT 5 cut(s) 601, 628, 1049, 1267, 1450
HpyCH4IV ACGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 1307
HpyF3I CTNAG 6 cut(s) 65, 412, 793, 816, 1382, 1599
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 2 cut(s) 479, 1626
KpnI GGTACC 1 cut(s) 1339
KspAI GTTAAC 2 cut(s) 430, 1402
Kzo9I GATC 3 cut(s) 133, 469, 1497
LmnI GCTCC 3 cut(s) 807, 857, 959
Lsp1109I GCAGC 3 cut(s) 322, 1054, 1266
LweI GCATC 5 cut(s) 175, 1410, 1426, 1477, 1499
MaeI CTAG 7 cut(s) 336, 575, 876, 905, 1140, 1227, 1604
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 4 cut(s) 595, 647, 686, 1456
MalI GATC 3 cut(s) 135, 471, 1499
MboI GATC 3 cut(s) 133, 469, 1497
MflI RGATCY 1 cut(s) 1497
MmeI TCCRAC 2 cut(s) 82, 444
Mph1103I ATGCAT 1 cut(s) 1492
MseI TTAA 5 cut(s) 429, 458, 557, 971, 1401
MslI CAYNNNNRTG 1 cut(s) 1142
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 4 cut(s) 1191, 1332, 1349, 1461
MspR9I CCNGG 3 cut(s) 331, 1333, 1350
MvaI CCWGG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 289, 1307
NciI CCSGG 2 cut(s) 1333, 1350
NdeII GATC 3 cut(s) 133, 469, 1497
NlaIII CATG 2 cut(s) 479, 1626
NlaIV GGNNCC 4 cut(s) 15, 328, 853, 1337
NmuCI GTSAC 1 cut(s) 647
NsiI ATGCAT 1 cut(s) 1492
NspV TTCGAA 2 cut(s) 305, 502
PfeI GAWTC 8 cut(s) 69, 722, 1073, 1100, 1246, 1256, 1595, 1619
PinAI ACCGGT 1 cut(s) 1190
PkrI GCNGC 4 cut(s) 312, 1069, 1281, 1628
PpuMI RGGWCCY 1 cut(s) 14
Psp1406I AACGTT 1 cut(s) 454
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 4 cut(s) 15, 328, 853, 1337
PspPI GGNCC 1 cut(s) 14
PspPPI RGGWCCY 1 cut(s) 14
PstI CTGCAG 1 cut(s) 1072
PstNI CAGNNNCTG 2 cut(s) 1067, 1076
PsuI RGATCY 1 cut(s) 1497
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 175, 1337
RsaNI GTAC 2 cut(s) 174, 1336
RseI CAYNNNNRTG 1 cut(s) 1142
SaqAI TTAA 5 cut(s) 429, 458, 557, 971, 1401
SatI GCNGC 4 cut(s) 311, 1068, 1280, 1627
Sau3AI GATC 3 cut(s) 133, 469, 1497
Sau96I GGNCC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 331, 1333, 1350
SfaNI GCATC 5 cut(s) 175, 1410, 1426, 1477, 1499
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 2 cut(s) 305, 502
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 1142
SpeI ACTAGT 2 cut(s) 335, 904
SspMI CTAG 7 cut(s) 336, 575, 876, 905, 1140, 1227, 1604
StyD4I CCNGG 3 cut(s) 329, 1331, 1348
TaaI ACNGT 5 cut(s) 601, 628, 1049, 1267, 1450
TaiI ACGT 1 cut(s) 457
TaqI TCGA 2 cut(s) 305, 502
TaqII GACCGA 1 cut(s) 1499
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 8 cut(s) 69, 722, 1073, 1100, 1246, 1256, 1595, 1619
Tru1I TTAA 5 cut(s) 429, 458, 557, 971, 1401
Tru9I TTAA 5 cut(s) 429, 458, 557, 971, 1401
TscAI CASTG 3 cut(s) 14, 633, 652
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 4 cut(s) 310, 1067, 1279, 1626
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 6 cut(s) 150, 464, 1071, 1430, 1512, 1621
TspRI CASTG 3 cut(s) 14, 633, 652
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 3 cut(s) 549, 1117, 1464
XcmI CCANNNNNNNNNTGG 3 cut(s) 175, 782, 890
XmiI GTMKAC 1 cut(s) 1581
XspI CTAG 7 cut(s) 336, 575, 876, 905, 1140, 1227, 1604
Zsp2I ATGCAT 1 cut(s) 1492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.