RLG00000019243

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016619
Physical Location & Seq
Reverse (-)
48876996 .. 48879023
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019243

Sequence Viewer

Length: 1464 bp
ATGGCGGATGCAAAACCTATTTTGCAGTTTCTTCTGTTTCTGTTTCTTGTTTGCCTCGGTACTTATGGAAATGGGGTTCAGGGTTTTAGAGAGAAGAACAAGGTGCTCGACCTGCAAGAGTTTCGTTTGAAGCAGCATGGTGGAACTGGAACCAGAACTAGTGCTTGCCTCTCCCAGAAATCAAGAAAGGAAAAAGGTGCAACTATATTGGAAATAAAACATAGAGATTATTGCTCAGCTGGAAAGATTGTTGACTGGAACAAAAAGCAACAGAAACGTTTAATGTTGGATGATCTTCATGTTCGGTTTCTGCAATCCCAATTCCGATATAGGATTTCTGGCATTACTACAAAGGATGATGTATCAGAAGCTCAAATTCCATTAACTTCTGGCGTAAGGCTAGAAACACTAAACTACATCGTAACTGTGGAATTGGGTGGTAGAAATATGACGGTGATTGTCGACACAGGCAGTGACTTGACTTGGGTTCAATGCCAACCTTGTAAATTGTGTTACAATCAACAAGAACCTCTCTTCAACCCTTCTGAATCTAAATCATACCAATCAGTTTTATGCAACTCAACAAATTGTCAGGCCCTCCAGTTTGCTACTGGGAATTCAGGAGTGTGTGGGAGGAATCCACAGACCTGTAACTATGTTGTGAACTATGGTGATGGCTCCTACACTCGGGGTGAGTTTGCTCGAGACCACCTCTACCTTGGAACTACACCAGTGGACAATTTTGTGTTTGGTTGTGGCAGAAACAATAAGGGTCTGTTTGGGGGAGCTTCAGGTTTGATGGGTTTGGGAAGGAGTGATAGTCTCTCAGTGGTTTCTCAGACATATGGCTTATTTGGTGGGGTTTTCTCTTACTGTTTACCTTCAACAGAAGTCGCAGATTCTGGCTCATTAGTTATGGGTGGGGATTCTTCAATTTACAAGAATTCAAGTCCTATTTCTTACACTAGAATGGTTGCAAATCCACAGCTATCCACCTTCTATTTTCTCAATCTCACCGGTATAAGTATTGGGGGAGTAGCTTTACAAGTTCCTAGTTTTGCAAGCGGTGGGATTCTGATCGATTCTGGGACAGTTATTTCAAGGCTGTCCCCTTCAGTTTACAAGACTATCAAGGCAGAGTTTCTGAAACAGTTTTCCGGGTACCCCCCAGCACCAGGTTTTTCAATTTTGGACACTTGCTTCAACCTTAGTGCATATCAAGAGGTGAACATTCCTACAATGAAGATGCACTTTGAGGGAGATGCAGAGCTGACTGTCGATGTAACCGGAATTTTCTACATGGTGAAGACTGATGCATCCCAGATCTGTTTGGCTCTTGCAAGTCTTTCATACGAAGATGAGGTGGCTATTATTGGGAACTATCAGCAAAGAAACCAAAGGGTTGTATACAATAATAAAGATTCTAAGCTGGGATTTGCGGAAGAAACATGCAGCTTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

488

Amino Acids

53.45

Weight (kDa)

7.81

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 139 - 308 4.4e-48 Xylanase inhibitor N-terminal
Asp PF00026 139 - 481 3.8e-21 Eukaryotic aspartyl protease
TAXi_C PF14541 334 - 480 4.2e-29 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016619)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79720
fragaria_vesca FvH4_6g28220
malus_domestica MD09G1228000.v1.1
prunus_persica Prupe.3G103900_v2.0.a1
pyrus_communis pycom09g14720
rosa_chinensis RchiOBHm_Chr2g0132281
rosa_laevigata RLG00000019243
rosa_roxburghii Rroxscaffold_2G00112200
rosa_rugosa Rorug02G0303400
rosa_samantha Rh2AG356400 Rh2BG362800 Rh2CG339900 Rh2DG379700
rosa_wichuraiana Rw2G028980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
Acc65I GGTACC 1 cut(s) 1161
AccB1I GGYRCC 1 cut(s) 1161
AccI GTMKAC 2 cut(s) 462, 1407
AciI CCGC 3 cut(s) 5, 1065, 1439
AclI AACGTT 1 cut(s) 277
AcsI RAATTY 4 cut(s) 375, 616, 943, 1290
AcuI CTGAAG 2 cut(s) 774, 1098
AfaI GTAC 2 cut(s) 61, 1163
AfiI CCNNNNNNNGG 2 cut(s) 687, 1175
AgeI ACCGGT 1 cut(s) 1016
AgsI TTSAA 9 cut(s) 130, 491, 538, 885, 933, 948, 1101, 1185, 1204
AhlI ACTAGT 1 cut(s) 158
AjnI CCWGG 1 cut(s) 1174
AloI GAACNNNNNNTCC 2 cut(s) 60, 92
AluBI AGCT 8 cut(s) 239, 371, 788, 988, 1040, 1270, 1429, 1455
AluI AGCT 8 cut(s) 239, 371, 788, 988, 1040, 1270, 1429, 1455
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 699, 827
AlwNI CAGNNNCTG 1 cut(s) 902
Ama87I CYCGRG 2 cut(s) 687, 702
AoxI GGCC 1 cut(s) 594
ApeKI GCWGC 2 cut(s) 133, 1452
ApoI RAATTY 4 cut(s) 375, 616, 943, 1290
AsiGI ACCGGT 1 cut(s) 1016
Asp718I GGTACC 1 cut(s) 1161
AspS9I GGNCC 1 cut(s) 595
AsuC2I CCSGG 1 cut(s) 1159
AsuHPI GGTGA 6 cut(s) 466, 683, 704, 1006, 1237, 1315
AvaI CYCGRG 2 cut(s) 687, 702
BanI GGYRCC 1 cut(s) 1161
BbsI GAAGAC 1 cut(s) 1313
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 145
BccI CCATC 2 cut(s) 668, 793
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 1176
BcnI CCSGG 1 cut(s) 1159
BcoDI GTCTC 2 cut(s) 699, 827
BcuI ACTAGT 1 cut(s) 158
BfaI CTAG 4 cut(s) 159, 401, 966, 1053
BfuAI ACCTGC 1 cut(s) 120
BglII AGATCT 1 cut(s) 1323
BisI GCNGC 2 cut(s) 134, 1453
BlpI GCTNAGC 1 cut(s) 235
BlsI GCNGC 2 cut(s) 135, 1454
Bme1390I CCNGG 2 cut(s) 1159, 1176
BmeT110I CYCGRG 2 cut(s) 687, 702
BmgT120I GGNCC 1 cut(s) 595
BmiI GGNNCC 3 cut(s) 151, 679, 1163
BmrFI CCNGG 2 cut(s) 1159, 1176
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 4 cut(s) 1236, 1252, 1303, 1325
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 1313
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpmI CTGGAG 1 cut(s) 584
Bpu1102I GCTNAGC 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 1159
Bsa29I ATCGAT 1 cut(s) 1080
BsaBI GATNNNNATC 1 cut(s) 1076
BsaI GGTCTC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 55, 718
BsaWI WCCGGW 2 cut(s) 1016, 1286
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 2 cut(s) 687, 1175
Bse118I RCCGGY 1 cut(s) 1016
Bse1I ACTGG 5 cut(s) 151, 260, 601, 616, 731
Bse8I GATNNNNATC 1 cut(s) 1076
BseBI CCWGG 1 cut(s) 1176
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 2 cut(s) 55, 718
BseGI GGATG 4 cut(s) 13, 295, 361, 1316
BseJI GATNNNNATC 1 cut(s) 1076
BseLI CCNNNNNNNGG 2 cut(s) 687, 1175
BseMII CTCAG 3 cut(s) 249, 840, 851
BseNI ACTGG 5 cut(s) 151, 260, 601, 616, 731
BseXI GCAGC 1 cut(s) 145
BseYI CCCAGC 2 cut(s) 1168, 1429
BshFI GGCC 1 cut(s) 596
BshNI GGYRCC 1 cut(s) 1161
BshTI ACCGGT 1 cut(s) 1016
BshVI ATCGAT 1 cut(s) 1080
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 2 cut(s) 687, 702
BsiSI CCGG 3 cut(s) 1017, 1158, 1287
BslFI GGGAC 2 cut(s) 1093, 1102
BslI CCNNNNNNNGG 2 cut(s) 687, 1175
BsmAI GTCTC 2 cut(s) 699, 827
BsmFI GGGAC 2 cut(s) 1093, 1102
BsnI GGCC 1 cut(s) 596
Bso31I GGTCTC 1 cut(s) 699
BsoBI CYCGRG 2 cut(s) 687, 702
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 3 cut(s) 292, 1077, 1323
Bsp1720I GCTNAGC 1 cut(s) 235
BspACI CCGC 3 cut(s) 5, 1065, 1439
BspANI GGCC 1 cut(s) 596
BspCNI CTCAG 3 cut(s) 248, 839, 850
BspDI ATCGAT 1 cut(s) 1080
BspLI GGNNCC 3 cut(s) 151, 679, 1163
BspMI ACCTGC 1 cut(s) 120
BspT107I GGYRCC 1 cut(s) 1161
BspTNI GGTCTC 1 cut(s) 699
BsrFI RCCGGY 1 cut(s) 1016
BsrI ACTGG 5 cut(s) 151, 260, 601, 616, 731
BssAI RCCGGY 1 cut(s) 1016
BssECI CCNNGG 2 cut(s) 55, 718
BssMI GATC 3 cut(s) 292, 1077, 1323
BssNAI GTATAC 1 cut(s) 1408
BssT1I CCWWGG 1 cut(s) 718
Bst1107I GTATAC 1 cut(s) 1408
Bst2UI CCWGG 1 cut(s) 1176
Bst4CI ACNGT 6 cut(s) 427, 454, 875, 1093, 1152, 1276
Bst6I CTCTTC 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 166, 1063
BstDEI CTNAG 5 cut(s) 235, 826, 837, 1208, 1425
BstF5I GGATG 4 cut(s) 13, 295, 361, 1316
BstKTI GATC 3 cut(s) 295, 1080, 1326
BstMAI GTCTC 2 cut(s) 699, 827
BstMBI GATC 3 cut(s) 292, 1077, 1323
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 1176
BstNSI RCATGY 1 cut(s) 1452
BstSCI CCNGG 2 cut(s) 1157, 1174
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 1313
BstX2I RGATCY 1 cut(s) 1323
BstYI RGATCY 1 cut(s) 1323
BstZ17I GTATAC 1 cut(s) 1408
Bsu15I ATCGAT 1 cut(s) 1080
BsuRI GGCC 1 cut(s) 596
BsuTUI ATCGAT 1 cut(s) 1080
BtsCI GGATG 4 cut(s) 13, 295, 361, 1316
BtsI GCAGTG 1 cut(s) 478
BtsIMutI CAGTG 3 cut(s) 478, 738, 834
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 166, 1063
CaiI CAGNNNCTG 1 cut(s) 902
Cfr10I RCCGGY 1 cut(s) 1016
Cfr13I GGNCC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 1080
CsiI ACCWGGT 1 cut(s) 1174
Csp6I GTAC 2 cut(s) 60, 1162
CspAI ACCGGT 1 cut(s) 1016
CviAII CATG 4 cut(s) 137, 299, 1300, 1449
CviQI GTAC 2 cut(s) 60, 1162
DdeI CTNAG 5 cut(s) 235, 826, 837, 1208, 1425
DpnI GATC 3 cut(s) 294, 1079, 1325
DpnII GATC 3 cut(s) 292, 1077, 1323
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 699
Eco57I CTGAAG 2 cut(s) 774, 1098
Eco88I CYCGRG 2 cut(s) 687, 702
EcoO109I RGGNCCY 1 cut(s) 595
EcoRI GAATTC 2 cut(s) 616, 943
EcoRII CCWGG 1 cut(s) 1174
EcoT14I CCWWGG 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 1318
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 4 cut(s) 140, 302, 1303, 1452
FalI AAGNNNNNCTT 2 cut(s) 1235, 1267
FaqI GGGAC 2 cut(s) 1093, 1102
FatI CATG 4 cut(s) 136, 298, 1299, 1448
FauNDI CATATG 1 cut(s) 844
FblI GTMKAC 2 cut(s) 462, 1407
Fnu4HI GCNGC 2 cut(s) 134, 1453
FokI GGATG 4 cut(s) 20, 302, 368, 1303
Fsp4HI GCNGC 2 cut(s) 134, 1453
FspBI CTAG 4 cut(s) 159, 401, 966, 1053
GluI GCNGC 2 cut(s) 134, 1453
GsaI CCCAGC 2 cut(s) 1172, 1433
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 1 cut(s) 596
HapII CCGG 3 cut(s) 1017, 1158, 1287
Hin1II CATG 4 cut(s) 140, 302, 1303, 1452
HincII GTYRAC 2 cut(s) 253, 463
HindII GTYRAC 2 cut(s) 253, 463
HinfI GANTC 7 cut(s) 548, 637, 899, 926, 1072, 1082, 1421
HpaII CCGG 3 cut(s) 1017, 1158, 1287
HphI GGTGA 6 cut(s) 466, 683, 704, 1006, 1237, 1315
Hpy166II GTNNAC 8 cut(s) 253, 463, 664, 736, 878, 1120, 1228, 1408
Hpy188I TCNGA 6 cut(s) 326, 367, 547, 840, 1077, 1146
Hpy188III TCNNGA 4 cut(s) 183, 621, 704, 1220
Hpy8I GTNNAC 8 cut(s) 253, 463, 664, 736, 878, 1120, 1228, 1408
HpyAV CCTTC 5 cut(s) 552, 804, 891, 1006, 1122
HpyCH4III ACNGT 6 cut(s) 427, 454, 875, 1093, 1152, 1276
HpyCH4IV ACGT 1 cut(s) 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 5 cut(s) 235, 826, 837, 1208, 1425
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 4 cut(s) 140, 302, 1303, 1452
KpnI GGTACC 1 cut(s) 1165
Kzo9I GATC 3 cut(s) 292, 1077, 1323
LmnI GCTCC 2 cut(s) 683, 785
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 4 cut(s) 1236, 1252, 1303, 1325
MabI ACCWGGT 1 cut(s) 1174
MaeI CTAG 4 cut(s) 159, 401, 966, 1053
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 5 cut(s) 421, 473, 512, 650, 1282
MalI GATC 3 cut(s) 294, 1079, 1325
MboI GATC 3 cut(s) 292, 1077, 1323
MboII GAAGA 9 cut(s) 23, 106, 287, 526, 921, 1255, 1318, 1367, 1454
MflI RGATCY 1 cut(s) 1323
MhlI GDGCHC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 9 cut(s) 65, 179, 540, 608, 627, 722, 1216, 1249, 1354
Mph1103I ATGCAT 1 cut(s) 1318
MseI TTAA 2 cut(s) 281, 383
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 1017, 1158, 1287
MspR9I CCNGG 2 cut(s) 1159, 1176
MvaI CCWGG 1 cut(s) 1176
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 1159
NdeI CATATG 1 cut(s) 844
NdeII GATC 3 cut(s) 292, 1077, 1323
NlaIII CATG 4 cut(s) 140, 302, 1303, 1452
NlaIV GGNNCC 3 cut(s) 151, 679, 1163
NmuCI GTSAC 1 cut(s) 473
NsiI ATGCAT 1 cut(s) 1318
NspI RCATGY 1 cut(s) 1452
PaeR7I CTCGAG 1 cut(s) 702
PfeI GAWTC 7 cut(s) 548, 637, 899, 926, 1072, 1082, 1421
PinAI ACCGGT 1 cut(s) 1016
PkrI GCNGC 2 cut(s) 135, 1454
Psp1406I AACGTT 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 1174
PspFI CCCAGC 2 cut(s) 1168, 1429
PspGI CCWGG 1 cut(s) 1174
PspN4I GGNNCC 3 cut(s) 151, 679, 1163
PspPI GGNCC 1 cut(s) 595
PstNI CAGNNNCTG 1 cut(s) 902
PsuI RGATCY 1 cut(s) 1323
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 61, 1163
RsaNI GTAC 2 cut(s) 60, 1162
RseI CAYNNNNRTG 1 cut(s) 968
SalI GTCGAC 1 cut(s) 461
SaqAI TTAA 2 cut(s) 281, 383
SatI GCNGC 2 cut(s) 134, 1453
Sau3AI GATC 3 cut(s) 292, 1077, 1323
Sau96I GGNCC 1 cut(s) 595
ScrFI CCNGG 2 cut(s) 1159, 1176
SduI GDGCHC 1 cut(s) 108
SexAI ACCWGGT 1 cut(s) 1174
SfaNI GCATC 4 cut(s) 1236, 1252, 1303, 1325
Sfr274I CTCGAG 1 cut(s) 702
SlaI CTCGAG 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 1 cut(s) 702
SmoI CTYRAG 1 cut(s) 702
SpeI ACTAGT 1 cut(s) 158
SsiI CCGC 3 cut(s) 5, 1065, 1439
SspMI CTAG 4 cut(s) 159, 401, 966, 1053
StyD4I CCNGG 2 cut(s) 1157, 1174
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 6 cut(s) 427, 454, 875, 1093, 1152, 1276
TaiI ACGT 1 cut(s) 280
TaqI TCGA 5 cut(s) 108, 462, 703, 1080, 1278
TfiI GAWTC 7 cut(s) 548, 637, 899, 926, 1072, 1082, 1421
Tru1I TTAA 2 cut(s) 281, 383
Tru9I TTAA 2 cut(s) 281, 383
TscAI CASTG 3 cut(s) 478, 738, 834
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 2 cut(s) 133, 1452
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 4 cut(s) 287, 1256, 1338, 1447
TspRI CASTG 3 cut(s) 478, 738, 834
XapI RAATTY 4 cut(s) 375, 616, 943, 1290
XceI RCATGY 1 cut(s) 1452
XcmI CCANNNNNNNNNTGG 2 cut(s) 608, 716
XhoI CTCGAG 1 cut(s) 702
XmiI GTMKAC 2 cut(s) 462, 1407
XspI CTAG 4 cut(s) 159, 401, 966, 1053
Zsp2I ATGCAT 1 cut(s) 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.