Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016619

Physical Location & Seq

Genomic Coordinates Reverse (-)

46509792 .. 46512525

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCCGATGCAAAACCTATTTTGCAGTTTCTTCTGTTTCTGTTTCTTGTTTGCCTCGGTACTTATGGAAATGGGGTTCAGGGTTTGAGAGAGAAGAACAAGGTGCTCGACCTGCAAGAGTTTCGTTTGAAGCAGCATGGTGGAACTGGAACCAGAACTAGTGCTTGCCTCTCCCAGAAATCAAGAAAGGAAAAAGGTGCGACTATATTGGAAATAAAACACAGAGATTATTGCTCAGCTGGAAAGATCGTTGACTGGAACAAAAAGCAACAGAAACGTTTAATGTTGGATGATCTTCATGTTCGGTTTCTGCAATCCCAATTCCGATATAGGATTTCTGGCATTACTACAAAAGACGATGTATCAGAAGCTCAAATTCCATTAACTTCTGGCGTAAGGCTAGAAACACTAAACTACATCGTAACTGTGGAATTGGGTGGTAGAAATATGACGGTGATTGTAGACACAGGCAGTGACTTGACTTGGGTTCAATGCCAACCTTGTAAATTGTGTTACAATCAACAAGAACCTCTCTTCAACCCTTCTCAATCTAAATCATACCAATCAGTTTTATGCAACTCAACAAATTGTCAGGCCCTCCGGTTTGCTACTGGGAATTCAGGAGTGTGTGGGAGGAATCCTCAGACCTGTAGCTATGTTGTGAACTATGGTGATGGCTCCTACACTCGGGGTGAGTTTGCTCGAGACCAACTCTACCTTGGAACTACACCAGTGGACAATTTTGTGTTTGGTTGTGGAAGAAACAATAAGGGTCTGTTTGGGGGAGCTTCAGGTTTGATGGGTTTGGGAAGGAGTGATAGTCTCTCAGTGGTTTCTCAAACATCTGGCTTATTTGGTGGGGTTTTCTCTTACTGTTTACCTTCAACAGAAGTCGCAGATTCTGGTTCATTAGTTATGGGTGGGGATTCTTCAATTTACAAGAATTCAACTCCTATTTCTTACACTAGAATGGTTGCAATCCACAGCTGTCCACCTTCTATTTTCTCAATCTCACCGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

340

Amino Acids

37.2

Weight (kDa)

8.9

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	139 - 308	6.8e-49	Xylanase inhibitor N-terminal
Asp	PF00026	139 - 313	1.2e-08	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79720
fragaria_vesca	FvH4_6g28220
malus_domestica	MD09G1228000.v1.1
prunus_persica	Prupe.3G103900_v2.0.a1
pyrus_communis	pycom09g14720
rosa_chinensis	RchiOBHm_Chr2g0132281
rosa_laevigata	RLG00000019243
rosa_roxburghii	Rroxscaffold_2G00112200
rosa_rugosa	Rorug02G0303400
rosa_samantha	Rh2AG356400 Rh2BG362800 Rh2CG339900 Rh2DG379700
rosa_wichuraiana	Rw2G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	462
AclI	AACGTT	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	375, 616, 943
AcuI	CTGAAG	1 cut(s)	774
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	687
AgeI	ACCGGT	1 cut(s)	1015
AgsI	TTSAA	6 cut(s)	130, 491, 538, 885, 933, 948
AhlI	ACTAGT	1 cut(s)	158
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
AluBI	AGCT	5 cut(s)	239, 371, 654, 788, 987
AluI	AGCT	5 cut(s)	239, 371, 654, 788, 987
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	2 cut(s)	699, 827
AlwNI	CAGNNNCTG	1 cut(s)	902
Ama87I	CYCGRG	2 cut(s)	687, 702
AoxI	GGCC	2 cut(s)	3, 594
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	3 cut(s)	375, 616, 943
AsiGI	ACCGGT	1 cut(s)	1015
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	4 cut(s)	466, 683, 704, 1005
AvaI	CYCGRG	2 cut(s)	687, 702
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	668, 793
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BcoDI	GTCTC	2 cut(s)	699, 827
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	3 cut(s)	159, 401, 966
BfmI	CTRYAG	1 cut(s)	649
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	135
BmeT110I	CYCGRG	2 cut(s)	687, 702
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	2 cut(s)	151, 679
BmrI	ACTGGG	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	621
BplI	GAGNNNNNCTC	4 cut(s)	625, 657, 696, 728
Bpu1102I	GCTNAGC	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	2 cut(s)	55, 718
BsaWI	WCCGGW	2 cut(s)	600, 1015
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	687
Bse118I	RCCGGY	1 cut(s)	1015
Bse1I	ACTGG	4 cut(s)	151, 260, 616, 731
BseDI	CCNNGG	2 cut(s)	55, 718
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	687
BseMII	CTCAG	3 cut(s)	249, 656, 840
BseNI	ACTGG	4 cut(s)	151, 260, 616, 731
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	2 cut(s)	5, 596
BshTI	ACCGGT	1 cut(s)	1015
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	2 cut(s)	687, 702
BsiSI	CCGG	2 cut(s)	601, 1016
BslI	CCNNNNNNNGG	1 cut(s)	687
BsmAI	GTCTC	2 cut(s)	699, 827
BsnI	GGCC	2 cut(s)	5, 596
Bso31I	GGTCTC	1 cut(s)	699
BsoBI	CYCGRG	2 cut(s)	687, 702
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	246, 292
Bsp1720I	GCTNAGC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	5, 596
BspCNI	CTCAG	3 cut(s)	248, 655, 839
BspLI	GGNNCC	2 cut(s)	151, 679
BspMI	ACCTGC	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	699
BsrFI	RCCGGY	1 cut(s)	1015
BsrI	ACTGG	4 cut(s)	151, 260, 616, 731
BssAI	RCCGGY	1 cut(s)	1015
BssECI	CCNNGG	2 cut(s)	55, 718
BssMI	GATC	2 cut(s)	246, 292
BssT1I	CCWWGG	1 cut(s)	718
Bst4CI	ACNGT	3 cut(s)	427, 454, 875
Bst6I	CTCTTC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	235, 642, 826
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	2 cut(s)	249, 295
BstMAI	GTCTC	2 cut(s)	699, 827
BstMBI	GATC	2 cut(s)	246, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	649
BstV1I	GCAGC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	5, 596
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	3 cut(s)	478, 738, 834
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	166
CaiI	CAGNNNCTG	1 cut(s)	902
Cfr10I	RCCGGY	1 cut(s)	1015
Cfr13I	GGNCC	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	60
CspAI	ACCGGT	1 cut(s)	1015
CviAII	CATG	2 cut(s)	137, 299
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	3 cut(s)	235, 642, 826
DpnI	GATC	2 cut(s)	248, 294
DpnII	GATC	2 cut(s)	246, 292
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	718
Eco31I	GGTCTC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	774
Eco88I	CYCGRG	2 cut(s)	687, 702
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRI	GAATTC	2 cut(s)	616, 943
EcoT14I	CCWWGG	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	2 cut(s)	140, 302
FatI	CATG	2 cut(s)	136, 298
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	3 cut(s)	159, 401, 966
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	5, 596
HapII	CCGG	2 cut(s)	601, 1016
Hin1II	CATG	2 cut(s)	140, 302
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	3 cut(s)	637, 899, 926
HpaII	CCGG	2 cut(s)	601, 1016
HphI	GGTGA	4 cut(s)	466, 683, 704, 1005
Hpy166II	GTNNAC	6 cut(s)	253, 463, 664, 736, 878, 992
Hpy188I	TCNGA	3 cut(s)	326, 367, 645
Hpy188III	TCNNGA	3 cut(s)	183, 621, 704
Hpy8I	GTNNAC	6 cut(s)	253, 463, 664, 736, 878, 992
HpyAV	CCTTC	4 cut(s)	552, 804, 891, 1005
HpyCH4III	ACNGT	3 cut(s)	427, 454, 875
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	6 cut(s)	11, 25, 115, 313, 576, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	3 cut(s)	235, 642, 826
HpySE526I	ACGT	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	140, 302
Kzo9I	GATC	2 cut(s)	246, 292
LmnI	GCTCC	2 cut(s)	683, 785
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	3 cut(s)	159, 401, 966
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	421, 473, 512
MalI	GATC	2 cut(s)	248, 294
MboI	GATC	2 cut(s)	246, 292
MboII	GAAGA	6 cut(s)	23, 106, 287, 526, 771, 921
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	9 cut(s)	320, 375, 431, 506, 586, 616, 739, 933, 943
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	65, 179, 540, 608, 627, 651
MseI	TTAA	2 cut(s)	281, 383
MslI	CAYNNNNRTG	1 cut(s)	968
MspA1I	CMGCKG	2 cut(s)	239, 987
MspI	CCGG	2 cut(s)	601, 1016
MwoI	GCNNNNNNNGC	1 cut(s)	112
NdeII	GATC	2 cut(s)	246, 292
NlaIII	CATG	2 cut(s)	140, 302
NlaIV	GGNNCC	2 cut(s)	151, 679
NmuCI	GTSAC	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	637, 899, 926
PinAI	ACCGGT	1 cut(s)	1015
PkrI	GCNGC	1 cut(s)	135
Psp1406I	AACGTT	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	151, 679
PspPI	GGNCC	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	902
PvuII	CAGCTG	2 cut(s)	239, 987
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	968
SaqAI	TTAA	2 cut(s)	281, 383
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	246, 292
Sau96I	GGNCC	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	649
Sfr274I	CTCGAG	1 cut(s)	702
SlaI	CTCGAG	1 cut(s)	702
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SpeI	ACTAGT	1 cut(s)	158
Sse9I	AATT	9 cut(s)	320, 375, 431, 506, 586, 616, 739, 933, 943
SspMI	CTAG	3 cut(s)	159, 401, 966
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	3 cut(s)	427, 454, 875
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	2 cut(s)	108, 703
TasI	AATT	9 cut(s)	320, 375, 431, 506, 586, 616, 739, 933, 943
TfiI	GAWTC	3 cut(s)	637, 899, 926
Tru1I	TTAA	2 cut(s)	281, 383
Tru9I	TTAA	2 cut(s)	281, 383
TscAI	CASTG	3 cut(s)	478, 738, 834
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	2 cut(s)	287, 897
TspRI	CASTG	3 cut(s)	478, 738, 834
XapI	RAATTY	3 cut(s)	375, 616, 943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	716
XhoI	CTCGAG	1 cut(s)	702
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	3 cut(s)	159, 401, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.