Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012192

Physical Location & Seq

Genomic Coordinates Forward (+)

21766748 .. 21768170

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGACTTCGTGTGATCTGGGTGACCGGAGCTCCGATATCCGGGAACCCTTCATCTCCACCGCGAAGTTATCCACGGTGGAGAACAAAAAGGAGAAGCTATGCATAGACGACATGCTCCAAAAGTATTGCGGCGAGTTCGGGCCGTGGCAGCGTTGGCACTTCGTGCTGACCAGTTTGGCTTGGGCTCTCGAGGCGTTTCACACCATGGTCATGATCTTTGCGGACCGTGAACCAAGTTGGAGGTGTCTTGACGGCCATTCGGGCTGTGATCCGACAGCCCCGAGCGTCTGTGGGTTTGCTCCGGGCTCGTGGGAGTGGCTGGGCGGTCCGGTGAGCTCGACGGTGGCGGAATGGGGTCTGGTTTGTGAAGAGAAGTATAAGGTCGGGTTGGCGCAGGCCTTGTTCTTCGGCGGCTGTATGATTGGTCAGTTTTTTTCCTACTCTTTTATTTCTCTCGTTTTAGTGTTAATTAGTAATGATTTGTTATTTCCGAAAGTGCATCAACCATTCAAATTCCTTCTCTGGTTTGCTCCCGAGAAACGAAATCCCTTCATATTCATGCAAACAAAACAAGCACCAGATTCATTACTAGTTAAAAAAATGTATTATAGGATGAGCTATAAGATAAACATAGGTAGACAGACACTAGTGTACAAAGGAGTTGCGTTTTTGGACCAGCTTGCGCTTGATAGCAAGTTTGGAAATGATAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0008514 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009705 GO:0009987 GO:0009991 GO:0010035 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031668 GO:0031976 GO:0031984 GO:0033554 GO:0034220 GO:0034357 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055035 GO:0055085 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

239

Amino Acids

27.09

Weight (kDa)

7.54

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73220 AT3G20660
fragaria_vesca	FvH4_6g28280
malus_domestica	MD03G1215000.v1.1 MD11G1229700.v1.1
prunus_persica	Prupe.4G197800_v2.0.a1
pyrus_communis	pycom03g16350 pycom11g20340
rosa_chinensis	RchiOBHm_Chr2g0132341
rosa_laevigata	RLG00000019247
rosa_multiflora	Rmu_sc0000781.1_g000003 Rmu_sc0002795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00112150
rosa_rugosa	Rorug02G0303700
rosa_samantha	Rh2AG356800 Rh2BG363300 Rh2CG340400 Rh2DG380100
rosa_wichuraiana	Rw2G029010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	637
AccII	CGCG	1 cut(s)	62
AciI	CCGC	6 cut(s)	60, 129, 221, 324, 347, 411
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	512
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	511
AhlI	ACTAGT	2 cut(s)	589, 646
AluBI	AGCT	5 cut(s)	30, 97, 336, 618, 679
AluI	AGCT	5 cut(s)	30, 97, 336, 618, 679
Alw21I	GWGCWC	2 cut(s)	32, 338
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	3 cut(s)	188, 280, 533
AoxI	GGCC	3 cut(s)	140, 253, 396
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	512
AspLEI	GCGC	2 cut(s)	394, 685
AspS9I	GGNCC	4 cut(s)	140, 223, 326, 673
AsuC2I	CCSGG	2 cut(s)	41, 303
AsuHPI	GGTGA	2 cut(s)	32, 343
AvaI	CYCGRG	3 cut(s)	188, 280, 533
AvaII	GGWCC	3 cut(s)	223, 326, 673
BanII	GRGCYC	4 cut(s)	32, 187, 308, 338
BauI	CACGAG	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	32, 338
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	2 cut(s)	127, 268
BcnI	CCSGG	2 cut(s)	41, 303
BcuI	ACTAGT	2 cut(s)	589, 646
BfaI	CTAG	2 cut(s)	590, 647
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	3 cut(s)	130, 149, 412
BlsI	GCNGC	3 cut(s)	131, 150, 413
Bme1390I	CCNGG	2 cut(s)	41, 303
Bme18I	GGWCC	3 cut(s)	223, 326, 673
BmeT110I	CYCGRG	3 cut(s)	188, 280, 533
BmgT120I	GGNCC	4 cut(s)	140, 223, 326, 673
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	41, 303
BmsI	GCATC	1 cut(s)	508
BpuMI	CCSGG	2 cut(s)	41, 303
BsaJI	CCNNGG	3 cut(s)	72, 143, 204
BsaWI	WCCGGW	2 cut(s)	24, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	171
BseDI	CCNNGG	3 cut(s)	72, 143, 204
BseGI	GGATG	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	142, 255, 398
BsiHKAI	GWGCWC	2 cut(s)	32, 338
BsiHKCI	CYCGRG	3 cut(s)	188, 280, 533
BsiSI	CCGG	4 cut(s)	25, 40, 302, 329
BslI	CCNNNNNNNGG	1 cut(s)	39
BsnI	GGCC	3 cut(s)	142, 255, 398
BsoBI	CYCGRG	3 cut(s)	188, 280, 533
Bsp1286I	GDGCHC	4 cut(s)	32, 187, 308, 338
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	3 cut(s)	13, 213, 268
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	6 cut(s)	60, 129, 221, 324, 347, 411
BspANI	GGCC	3 cut(s)	142, 255, 398
BspFNI	CGCG	1 cut(s)	62
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	263
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	3 cut(s)	72, 143, 204
BssMI	GATC	3 cut(s)	13, 213, 268
BssSI	CACGAG	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	307
Bst4CI	ACNGT	3 cut(s)	76, 227, 343
Bst6I	CTCTTC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstAUI	TGTACA	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	396, 681
BstDSI	CCRYGG	3 cut(s)	72, 143, 204
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	618
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	2 cut(s)	394, 685
BstKTI	GATC	3 cut(s)	16, 216, 271
BstMBI	GATC	3 cut(s)	13, 213, 268
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 154, 163, 191, 261
BstNSI	RCATGY	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	39, 301
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	142, 255, 398
BtgI	CCRYGG	3 cut(s)	72, 143, 204
BtsCI	GGATG	1 cut(s)	618
Cac8I	GCNNGC	2 cut(s)	396, 681
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	394, 685
Cfr13I	GGNCC	4 cut(s)	140, 223, 326, 673
CpoI	CGGWCCG	2 cut(s)	223, 326
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	652
CspI	CGGWCCG	2 cut(s)	223, 326
CviAII	CATG	4 cut(s)	112, 205, 211, 559
CviQI	GTAC	1 cut(s)	652
DpnI	GATC	3 cut(s)	15, 215, 270
DpnII	GATC	3 cut(s)	13, 213, 268
DraIII	CACNNNGTG	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	2 cut(s)	30, 336
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	4 cut(s)	32, 187, 308, 338
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	223, 326, 673
Eco53kI	GAGCTC	2 cut(s)	30, 336
Eco88I	CYCGRG	3 cut(s)	188, 280, 533
Eco91I	GGTNACC	1 cut(s)	20
EcoICRI	GAGCTC	2 cut(s)	30, 336
EcoO65I	GGTNACC	1 cut(s)	20
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	104
EcoT38I	GRGCYC	4 cut(s)	32, 187, 308, 338
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	4 cut(s)	115, 208, 214, 562
FatI	CATG	4 cut(s)	111, 204, 210, 558
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	3 cut(s)	130, 149, 412
FokI	GGATG	1 cut(s)	625
FriOI	GRGCYC	4 cut(s)	32, 187, 308, 338
Fsp4HI	GCNGC	3 cut(s)	130, 149, 412
FspBI	CTAG	2 cut(s)	590, 647
GlaI	GCGC	2 cut(s)	393, 684
GluI	GCNGC	3 cut(s)	130, 149, 412
GsaI	CCCAGC	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	142, 255, 398
HapII	CCGG	4 cut(s)	25, 40, 302, 329
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	2 cut(s)	394, 685
Hin1II	CATG	4 cut(s)	115, 208, 214, 562
Hin6I	GCGC	2 cut(s)	392, 683
HinP1I	GCGC	2 cut(s)	392, 683
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	4 cut(s)	25, 40, 302, 329
HphI	GGTGA	2 cut(s)	32, 343
Hpy166II	GTNNAC	3 cut(s)	230, 638, 652
Hpy188I	TCNGA	3 cut(s)	34, 273, 492
Hpy188III	TCNNGA	4 cut(s)	188, 211, 248, 533
Hpy8I	GTNNAC	3 cut(s)	230, 638, 652
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	58, 527, 559
HpyCH4III	ACNGT	3 cut(s)	76, 227, 343
HpyCH4V	TGCA	3 cut(s)	102, 499, 562
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 154, 163, 191, 261
Hsp92II	CATG	4 cut(s)	115, 208, 214, 562
HspAI	GCGC	2 cut(s)	392, 683
Kzo9I	GATC	3 cut(s)	13, 213, 268
LmnI	GCTCC	5 cut(s)	27, 35, 120, 304, 535
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	590, 647
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	15, 215, 270
MboI	GATC	3 cut(s)	13, 213, 268
MboII	GAAGA	2 cut(s)	380, 397
MhlI	GDGCHC	4 cut(s)	32, 187, 308, 338
MluCI	AATT	2 cut(s)	468, 512
MmeI	TCCRAC	2 cut(s)	218, 296
MnlI	CCTC	2 cut(s)	184, 234
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	3 cut(s)	467, 594, 715
MslI	CAYNNNNRTG	2 cut(s)	209, 557
MspI	CCGG	4 cut(s)	25, 40, 302, 329
MspR9I	CCNGG	2 cut(s)	41, 303
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	5 cut(s)	148, 154, 163, 191, 261
NciI	CCSGG	2 cut(s)	41, 303
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	3 cut(s)	13, 213, 268
NlaIII	CATG	4 cut(s)	115, 208, 214, 562
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	20
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	131, 150, 413
Psp124BI	GAGCTC	2 cut(s)	32, 338
PspEI	GGTNACC	1 cut(s)	20
PspFI	CCCAGC	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	4 cut(s)	140, 223, 326, 673
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	2 cut(s)	209, 557
Rsr2I	CGGWCCG	2 cut(s)	223, 326
RsrII	CGGWCCG	2 cut(s)	223, 326
SacI	GAGCTC	2 cut(s)	32, 338
SaqAI	TTAA	3 cut(s)	467, 594, 715
SatI	GCNGC	3 cut(s)	130, 149, 412
Sau3AI	GATC	3 cut(s)	13, 213, 268
Sau96I	GGNCC	4 cut(s)	140, 223, 326, 673
ScrFI	CCNGG	2 cut(s)	41, 303
SduI	GDGCHC	4 cut(s)	32, 187, 308, 338
SetI	ASST	8 cut(s)	32, 99, 245, 338, 384, 620, 637, 681
SfaNI	GCATC	1 cut(s)	508
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	3 cut(s)	223, 326, 673
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	209, 557
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SpeI	ACTAGT	2 cut(s)	589, 646
Sse9I	AATT	2 cut(s)	468, 512
SseBI	AGGCCT	1 cut(s)	398
SsiI	CCGC	6 cut(s)	60, 129, 221, 324, 347, 411
SspMI	CTAG	2 cut(s)	590, 647
SstI	GAGCTC	2 cut(s)	32, 338
StuI	AGGCCT	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	39, 301
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	76, 227, 343
TaqI	TCGA	2 cut(s)	189, 338
TasI	AATT	2 cut(s)	468, 512
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	2 cut(s)	132, 414
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	467, 594, 715
Tru9I	TTAA	3 cut(s)	467, 594, 715
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	40, 541, 547, 573
VpaK11BI	GGWCC	3 cut(s)	223, 326, 673
XapI	RAATTY	1 cut(s)	512
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	637
XspI	CTAG	2 cut(s)	590, 647
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.