Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012192

Physical Location & Seq

Genomic Coordinates Forward (+)

34009854 .. 34012825

Gene Structure 2972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0303700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGATGCTTGTCATATTTTATTTGGGCGACCTTGGCAATATGATGTGGATGTGACTTACAAAGGCAGAGATAATGTGATGATGTTTATATGGAATAGTCATAAAATTGCTATGGCTCCTGTCTTACAATTTGAGAAGTCTGGTGGAAAGAAAGGGGAGAGTTTTCTGACCTTGTCTAGCGGTGAATTTGAGATGGAGGAAGCCTTTAAAGAATCTGAAGTTTTCTGTCCAGTGGTGATTAAAGGTTTGTTGACTGCAGAAAAAGAAGATATAGTGATCCCTAAGGAAGTGCAGAATATGTTGGGAGAGTTCAAAGAGCTGATTTCAGATGAGTTGCCCAACGAATTACCACCTATGAGGGACATTCAGCATCAGATTGATTTGGTGCCTGGAGCTAGTTTGTCAAATCTGCCCCATTACCGCATGAGTCCCAAGGAGAACGAGATTTTGAGGGAGCAGATTGAAGACTTGCTGAAAAAAGGGTTCATTCGTGAGAGTATGAGTCCTTGTGCAGTTTCAGTCCTCCTTGTTCCTAAGAAGGGCAATCAATGGCGGATCCTCTATTCTTCCTCTTCGTTCTACACCGACTCCTCGCTCTATTCCTCCTCTTCATCCTCTTGGTTCTTCGAATCCAAGCAGAACTCGACACCTCGTCCTCCATCTTGTTCGAGTCAGGCCAGCTCTTGTTCCTCCTCTTCGTTCTACGCCTCCTGTTCGCTCTATTCCTCCTCTTCATCATCTTGGTTCTTCGAATCCAAGCAGAACTCGACGCCTCGTCCTCCATCTGTTTCGAGTCAGGCCAGCTCTTGTACGTGCTCGAAGACAGTGAACAGCATCGGTTCCTCAAGGCCGCCGTTTCGGAGAAACTTTGAGCTTTTGAGTCATAGGAATTGTGTTTCATCTACAGAGTTATTCTTCATTCAGCTGGGCAAAGTTCGAAGCTTCCATGACCGTGAGAAGTTAGTGTTGAACGATTTCGACATTGAAAAGGATGCCCAAGGGGTTGATAAGCCAGTCATCTGGGAATTTAAAGCAGTTGAGGTTAAGAAGAAAACTTTAGAGATCCGATTTCATTGGTCTGGGAAAGGGACAACAGCTTCCCCAAACAGAGGAGTATATGGTCCCCTTATTTCAGCTCTCTCTATAGAATCAGTGCAAGCCTGTCTGGATAAGAAGACATCAAGAGAAGAAGCTCTGAGAGGACTGGATCTGCAAACTGGCTTTTTCACCTTCAAGCAAATAAAAGCTGCCACTAATAACTTTGATCCTGTAAACAAAATTGGGGAAGGTGGTTTTGGATCTGTGTACAATGGAATACTACTGGATGGTACTATAATTGCAGTAAAGCAATTATCTGCAAAATCAAAACAAGGAAATCGAGAATTTGTGAACGAAATAGGCATGATTTCTGGTTTACAGCATCCAAATGTCGTGAGATTGTATGGATGTTGTATTGAAGCAAATCAGTTACTTTTGGTATATGAATACATGGAGAACAATAGCCTTGCACATGATTTGTTTGGTAAGCTTATCATGCCTAGGAACAATATTGAAATCATGTATTACAAACTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0007154 GO:0008150 GO:0008509 GO:0008514 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009628 GO:0009705 GO:0009987 GO:0009991 GO:0010035 GO:0015075 GO:0015711 GO:0016020 GO:0016021 GO:0022857 GO:0031090 GO:0031224 GO:0031668 GO:0031976 GO:0031984 GO:0033554 GO:0034220 GO:0034357 GO:0042221 GO:0042631 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055035 GO:0055085 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko05231 map05231

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

525

Amino Acids

59.03

Weight (kDa)

7.09

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	319 - 380	1.2e-07	Malectin domain
Pkinase	PF00069	424 - 517	1.4e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	425 - 506	5.3e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73220 AT3G20660
fragaria_vesca	FvH4_6g28280
malus_domestica	MD03G1215000.v1.1 MD11G1229700.v1.1
prunus_persica	Prupe.4G197800_v2.0.a1
pyrus_communis	pycom03g16350 pycom11g20340
rosa_chinensis	RchiOBHm_Chr2g0132341
rosa_laevigata	RLG00000019247
rosa_multiflora	Rmu_sc0000781.1_g000003 Rmu_sc0002795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00112150
rosa_rugosa	Rorug02G0303700
rosa_samantha	Rh2AG356800 Rh2BG363300 Rh2CG340400 Rh2DG380100
rosa_wichuraiana	Rw2G029010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AciI	CCGC	4 cut(s)	180, 421, 553, 851
AclWI	GGATC	7 cut(s)	271, 550, 563, 1057, 1215, 1259, 1306
AcsI	RAATTY	3 cut(s)	185, 1025, 1382
AcuI	CTGAAG	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	770
AfaI	GTAC	4 cut(s)	811, 1307, 1330, 1574
AfiI	CCNNNNNNNGG	2 cut(s)	539, 1109
AgsI	TTSAA	7 cut(s)	313, 464, 970, 986, 1234, 1457, 1553
AhdI	GACNNNNNGTC	2 cut(s)	651, 774
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	1278, 1310
Alw21I	GWGCWC	1 cut(s)	818
AlwI	GGATC	7 cut(s)	271, 550, 563, 1057, 1215, 1259, 1306
AoxI	GGCC	3 cut(s)	675, 798, 848
ApeKI	GCWGC	1 cut(s)	1247
ApoI	RAATTY	3 cut(s)	185, 1025, 1382
Asp700I	GAANNNNTTC	1 cut(s)	974
AspA2I	CCTAGG	1 cut(s)	1538
AspS9I	GGNCC	1 cut(s)	1121
AsuHPI	GGTGA	3 cut(s)	194, 247, 1219
AsuII	TTCGAA	3 cut(s)	627, 750, 937
AvaII	GGWCC	1 cut(s)	1121
AvrII	CCTAGG	1 cut(s)	1538
AxyI	CCTNAGG	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	385
BbsI	GAAGAC	3 cut(s)	471, 827, 1181
Bbv12I	GWGCWC	1 cut(s)	818
BbvI	GCAGC	1 cut(s)	1234
BccI	CCATC	4 cut(s)	187, 667, 790, 1319
BceAI	ACGGC	1 cut(s)	838
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	3 cut(s)	177, 396, 1539
BfmI	CTRYAG	3 cut(s)	255, 903, 1143
BisI	GCNGC	2 cut(s)	851, 1248
BlnI	CCTAGG	1 cut(s)	1538
BlsI	GCNGC	2 cut(s)	852, 1249
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	1121
BmeRI	GACNNNNNGTC	2 cut(s)	651, 774
BmgT120I	GGNCC	1 cut(s)	1121
BmiI	GGNNCC	5 cut(s)	117, 387, 557, 841, 1123
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	379, 843, 982, 1429
BpiI	GAAGAC	3 cut(s)	471, 827, 1181
BpmI	CTGGAG	1 cut(s)	411
Bpu14I	TTCGAA	3 cut(s)	627, 750, 937
BpuEI	CTTGAG	1 cut(s)	829
BsaAI	YACGTR	1 cut(s)	813
BsaHI	GRCGYC	1 cut(s)	770
BsaJI	CCNNGG	4 cut(s)	32, 432, 997, 1538
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bsc4I	CCNNNNNNNGG	2 cut(s)	539, 1109
Bse1I	ACTGG	5 cut(s)	230, 1013, 1209, 1222, 1326
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	4 cut(s)	32, 432, 997, 1538
BseGI	GGATG	7 cut(s)	10, 55, 611, 997, 1330, 1420, 1451
BseLI	CCNNNNNNNGG	2 cut(s)	539, 1109
BseMII	CTCAG	1 cut(s)	1187
BseNI	ACTGG	5 cut(s)	230, 1013, 1209, 1222, 1326
BseRI	GAGGAG	5 cut(s)	580, 595, 682, 718, 1125
BseXI	GCAGC	1 cut(s)	1234
BseYI	CCCAGC	1 cut(s)	925
BsgI	GTGCAG	2 cut(s)	311, 531
BshFI	GGCC	3 cut(s)	677, 800, 850
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	818
BslFI	GGGAC	4 cut(s)	374, 414, 1102, 1107
BslI	CCNNNNNNNGG	2 cut(s)	539, 1109
BsmFI	GGGAC	4 cut(s)	374, 414, 1102, 1107
BsnI	GGCC	3 cut(s)	677, 800, 850
Bsp119I	TTCGAA	3 cut(s)	627, 750, 937
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp1407I	TGTACA	1 cut(s)	1305
Bsp143I	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
BspACI	CCGC	4 cut(s)	180, 421, 553, 851
BspANI	GGCC	3 cut(s)	677, 800, 850
BspCNI	CTCAG	1 cut(s)	1188
BspLI	GGNNCC	5 cut(s)	117, 387, 557, 841, 1123
BspMAI	CTGCAG	1 cut(s)	259
BspPI	GGATC	7 cut(s)	271, 550, 563, 1057, 1215, 1259, 1306
BspT104I	TTCGAA	3 cut(s)	627, 750, 937
BspT107I	GGYRCC	1 cut(s)	385
BsrGI	TGTACA	1 cut(s)	1305
BsrI	ACTGG	5 cut(s)	230, 1013, 1209, 1222, 1326
BssECI	CCNNGG	4 cut(s)	32, 432, 997, 1538
BssMI	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
BssNI	GRCGYC	1 cut(s)	770
BssT1I	CCWWGG	4 cut(s)	32, 432, 997, 1538
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	3 cut(s)	826, 953, 1572
Bst6I	CTCTTC	4 cut(s)	577, 613, 700, 736
BstACI	GRCGYC	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	1305
BstBAI	YACGTR	1 cut(s)	813
BstBI	TTCGAA	3 cut(s)	627, 750, 937
BstC8I	GCNNGC	3 cut(s)	679, 802, 1158
BstDEI	CTNAG	3 cut(s)	282, 534, 1196
BstF5I	GGATG	7 cut(s)	10, 55, 611, 997, 1330, 1420, 1451
BstKTI	GATC	6 cut(s)	279, 558, 1065, 1210, 1267, 1301
BstMBI	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 1534
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	3 cut(s)	255, 903, 1143
BstV1I	GCAGC	1 cut(s)	1234
BstV2I	GAAGAC	3 cut(s)	471, 827, 1181
BstX2I	RGATCY	4 cut(s)	555, 1062, 1207, 1298
BstXI	CCANNNNNNTGG	1 cut(s)	1020
BstYI	RGATCY	4 cut(s)	555, 1062, 1207, 1298
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	677, 800, 850
BtsCI	GGATG	7 cut(s)	10, 55, 611, 997, 1330, 1420, 1451
BtsIMutI	CAGTG	3 cut(s)	237, 831, 1158
Cac8I	GCNNGC	3 cut(s)	679, 802, 1158
Cfr13I	GGNCC	1 cut(s)	1121
CseI	GACGC	1 cut(s)	778
Csp6I	GTAC	4 cut(s)	810, 1306, 1329, 1573
CviAII	CATG	7 cut(s)	424, 947, 1402, 1489, 1511, 1534, 1558
CviQI	GTAC	4 cut(s)	810, 1306, 1329, 1573
DdeI	CTNAG	3 cut(s)	282, 534, 1196
DpnI	GATC	6 cut(s)	278, 557, 1064, 1209, 1266, 1300
DpnII	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
DraI	TTTAAA	2 cut(s)	208, 1030
DriI	GACNNNNNGTC	2 cut(s)	651, 774
Eam1104I	CTCTTC	4 cut(s)	577, 613, 700, 736
Eam1105I	GACNNNNNGTC	2 cut(s)	651, 774
EarI	CTCTTC	4 cut(s)	577, 613, 700, 736
EciI	GGCGGA	1 cut(s)	568
Eco130I	CCWWGG	4 cut(s)	32, 432, 997, 1538
Eco47I	GGWCC	1 cut(s)	1121
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	4 cut(s)	32, 432, 997, 1538
ErhI	CCWWGG	4 cut(s)	32, 432, 997, 1538
FaeI	CATG	7 cut(s)	427, 950, 1405, 1492, 1514, 1537, 1561
FaqI	GGGAC	4 cut(s)	374, 414, 1102, 1107
FatI	CATG	7 cut(s)	423, 946, 1401, 1488, 1510, 1533, 1557
Fnu4HI	GCNGC	2 cut(s)	851, 1248
FokI	GGATG	7 cut(s)	17, 62, 598, 1004, 1337, 1407, 1458
Fsp4HI	GCNGC	2 cut(s)	851, 1248
FspBI	CTAG	3 cut(s)	177, 396, 1539
GluI	GCNGC	2 cut(s)	851, 1248
GsaI	CCCAGC	1 cut(s)	929
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	677, 800, 850
HgaI	GACGC	1 cut(s)	778
Hin1I	GRCGYC	1 cut(s)	770
Hin1II	CATG	7 cut(s)	427, 950, 1405, 1492, 1514, 1537, 1561
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HindIII	AAGCTT	2 cut(s)	940, 1526
HphI	GGTGA	3 cut(s)	194, 247, 1219
Hpy166II	GTNNAC	6 cut(s)	252, 829, 1273, 1306, 1390, 1415
Hpy188I	TCNGA	7 cut(s)	168, 217, 328, 375, 861, 1067, 1197
Hpy188III	TCNNGA	5 cut(s)	491, 1166, 1182, 1379, 1432
Hpy8I	GTNNAC	6 cut(s)	252, 829, 1273, 1306, 1390, 1415
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	3 cut(s)	532, 1240, 1280
HpyCH4III	ACNGT	3 cut(s)	826, 953, 1572
HpyCH4IV	ACGT	1 cut(s)	812
HpyCH4V	TGCA	8 cut(s)	257, 292, 512, 1156, 1213, 1340, 1358, 1508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 1534
HpyF3I	CTNAG	3 cut(s)	282, 534, 1196
HpySE526I	ACGT	1 cut(s)	812
Hsp92I	GRCGYC	1 cut(s)	770
Hsp92II	CATG	7 cut(s)	427, 950, 1405, 1492, 1514, 1537, 1561
Kzo9I	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
LmnI	GCTCC	3 cut(s)	121, 392, 454
Lsp1109I	GCAGC	1 cut(s)	1234
LweI	GCATC	4 cut(s)	379, 843, 982, 1429
MaeI	CTAG	3 cut(s)	177, 396, 1539
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	2 cut(s)	52, 1467
MalI	GATC	6 cut(s)	278, 557, 1064, 1209, 1266, 1300
MboI	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
MflI	RGATCY	4 cut(s)	555, 1062, 1207, 1298
MhlI	GDGCHC	1 cut(s)	818
MlyI	GAGTC	6 cut(s)	436, 511, 581, 679, 802, 889
MroXI	GAANNNNTTC	1 cut(s)	974
MseI	TTAA	4 cut(s)	207, 240, 1029, 1044
MslI	CAYNNNNRTG	2 cut(s)	951, 1425
MspA1I	CMGCKG	1 cut(s)	925
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	34, 1534
NdeII	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
NlaIII	CATG	7 cut(s)	427, 950, 1405, 1492, 1514, 1537, 1561
NlaIV	GGNNCC	5 cut(s)	117, 387, 557, 841, 1123
NmuCI	GTSAC	1 cut(s)	52
NspV	TTCGAA	3 cut(s)	627, 750, 937
PdmI	GAANNNNTTC	1 cut(s)	974
PfeI	GAWTC	4 cut(s)	212, 629, 752, 1148
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	852, 1249
PleI	GAGTC	6 cut(s)	435, 510, 581, 678, 801, 888
PpsI	GAGTC	6 cut(s)	435, 510, 581, 678, 801, 888
Ppu21I	YACGTR	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	925
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	5 cut(s)	117, 387, 557, 841, 1123
PspPI	GGNCC	1 cut(s)	1121
PstI	CTGCAG	1 cut(s)	259
PsuI	RGATCY	4 cut(s)	555, 1062, 1207, 1298
PsyI	GACNNNGTC	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	925
RsaI	GTAC	4 cut(s)	811, 1307, 1330, 1574
RsaNI	GTAC	4 cut(s)	810, 1306, 1329, 1573
RseI	CAYNNNNRTG	2 cut(s)	951, 1425
SaqAI	TTAA	4 cut(s)	207, 240, 1029, 1044
SatI	GCNGC	2 cut(s)	851, 1248
Sau3AI	GATC	6 cut(s)	276, 555, 1062, 1207, 1264, 1298
Sau96I	GGNCC	1 cut(s)	1121
SchI	GAGTC	6 cut(s)	436, 511, 581, 679, 802, 889
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	4 cut(s)	379, 843, 982, 1429
SfcI	CTRYAG	3 cut(s)	255, 903, 1143
SfuI	TTCGAA	3 cut(s)	627, 750, 937
SinI	GGWCC	1 cut(s)	1121
SmiMI	CAYNNNNRTG	2 cut(s)	951, 1425
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
SsiI	CCGC	4 cut(s)	180, 421, 553, 851
SspI	AATATT	1 cut(s)	1549
SspMI	CTAG	3 cut(s)	177, 396, 1539
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	4 cut(s)	32, 432, 997, 1538
TaaI	ACNGT	3 cut(s)	826, 953, 1572
TaiI	ACGT	1 cut(s)	815
TatI	WGTACW	2 cut(s)	1305, 1572
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	212, 629, 752, 1148
Tru1I	TTAA	4 cut(s)	207, 240, 1029, 1044
Tru9I	TTAA	4 cut(s)	207, 240, 1029, 1044
TscAI	CASTG	3 cut(s)	237, 831, 1158
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	1247
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	7 cut(s)	475, 600, 723, 888, 907, 1061, 1497
TspRI	CASTG	3 cut(s)	237, 831, 1158
Tth111I	GACNNNGTC	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	1121
XapI	RAATTY	3 cut(s)	185, 1025, 1382
XmaJI	CCTAGG	1 cut(s)	1538
XmnI	GAANNNNTTC	1 cut(s)	974
XspI	CTAG	3 cut(s)	177, 396, 1539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.