FvH4_6g28500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015997
Physical Location & Seq
Reverse (-)
21962467 .. 21964219
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28500.t1

Sequence Viewer

Length: 246 bp
ATGAGCAGCAGCAGCAGCGAGGCCAAAGCCGGAAAGGGGTTTAGGGGCAAAATGGAGCACTACTTGTACAGCGGCGACAAGAAGCACGTCATGGCCGGCATCGTTCTCATCAGCGCCGTCTTCGCCGTTCCTTGGTACTTCATGACTCGAGGGGCAAAGCATCAATCCCATCAAGATTACTTGGAAAAGGCTGATAAGGCAAGGAGCCAAAGACTGTCTTCAAGTAGTGCATCTTCTGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.9

Weight (kDa)

9.93

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80890
fragaria_vesca FvH4_6g28500
malus_domestica MD09G1225600.v1.1 MD17G1224400.v1.1
prunus_persica Prupe.2G074900_v2.0.a1 Prupe.3G100100_v2.0.a1
pyrus_communis pycom09g14510
rosa_chinensis RchiOBHm_Chr2g0132751
rosa_multiflora Rmu_sc0004972.1_g000002 Rmu_ssc0000074.1_g000005
rosa_roxburghii Rroxscaffold_2G00111680
rosa_rugosa Rorug02G0307100
rosa_samantha Rh2BG365900 Rh2CG342800
rosa_wichuraiana Rw2G029260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 93
AfaI GTAC 2 cut(s) 68, 137
AfiI CCNNNNNNNGG 2 cut(s) 36, 132
AgsI TTSAA 1 cut(s) 222
AjiI CACGTC 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 2 cut(s) 21, 93
ApeKI GCWGC 4 cut(s) 6, 9, 12, 15
AspLEI GCGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 147
BarI GAAGNNNNNNTAC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 112, 210
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 18, 21, 24, 27
BccI CCATC 1 cut(s) 177
BceAI ACGGC 2 cut(s) 101, 110
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 5 cut(s) 7, 10, 13, 16, 73
BlsI GCNGC 5 cut(s) 8, 11, 14, 17, 74
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 206
BmsI GCATC 3 cut(s) 108, 169, 239
BpiI GAAGAC 2 cut(s) 112, 210
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 132
Bse118I RCCGGY 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 36, 132
BseXI GCAGC 4 cut(s) 18, 21, 24, 27
BshFI GGCC 2 cut(s) 23, 95
BsiHKAI GWGCWC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 30, 96
BslI CCNNNNNNNGG 2 cut(s) 36, 132
BsnI GGCC 2 cut(s) 23, 95
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 66
BspACI CCGC 1 cut(s) 72
BspANI GGCC 2 cut(s) 23, 95
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstMWI GCNNNNNNNGC 5 cut(s) 12, 15, 122, 197, 236
BstV1I GCAGC 4 cut(s) 18, 21, 24, 27
BstV2I GAAGAC 2 cut(s) 112, 210
BsuRI GGCC 2 cut(s) 23, 95
BtrI CACGTC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 97
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 95
Csp6I GTAC 2 cut(s) 67, 136
CviAII CATG 2 cut(s) 91, 142
CviJI RGCY 5 cut(s) 23, 29, 95, 191, 207
CviKI_1 RGCY 5 cut(s) 23, 29, 95, 191, 207
CviQI GTAC 2 cut(s) 67, 136
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 94, 145
FaiI YATR 2 cut(s) 92, 143
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FatI CATG 2 cut(s) 90, 141
Fnu4HI GCNGC 5 cut(s) 7, 10, 13, 16, 73
Fsp4HI GCNGC 5 cut(s) 7, 10, 13, 16, 73
GlaI GCGC 1 cut(s) 115
GluI GCNGC 5 cut(s) 7, 10, 13, 16, 73
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 23, 95
HapII CCGG 2 cut(s) 30, 96
HhaI GCGC 1 cut(s) 116
Hin1II CATG 2 cut(s) 94, 145
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 1 cut(s) 145
HpaII CCGG 2 cut(s) 30, 96
Hpy188III TCNNGA 2 cut(s) 142, 173
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 15, 122, 197, 236
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 2 cut(s) 94, 145
HspAI GCGC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 55, 204
LpnPI CCDG 2 cut(s) 43, 109
Lsp1109I GCAGC 4 cut(s) 18, 21, 24, 27
LweI GCATC 3 cut(s) 108, 169, 239
MaeII ACGT 1 cut(s) 87
MboII GAAGA 3 cut(s) 112, 210, 225
MhlI GDGCHC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 139
MnlI CCTC 2 cut(s) 13, 143
MroNI GCCGGC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 2 cut(s) 30, 96
MwoI GCNNNNNNNGC 5 cut(s) 12, 15, 122, 197, 236
NaeI GCCGGC 1 cut(s) 97
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 2 cut(s) 94, 145
NlaIV GGNNCC 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 147
PagI TCATGA 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 97
PkrI GCNGC 5 cut(s) 8, 11, 14, 17, 74
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 206
PspXI VCTCGAGB 1 cut(s) 147
RsaI GTAC 2 cut(s) 68, 137
RsaNI GTAC 2 cut(s) 67, 136
SatI GCNGC 5 cut(s) 7, 10, 13, 16, 73
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 60
SetI ASST 1 cut(s) 90
SfaNI GCATC 3 cut(s) 108, 169, 239
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SsiI CCGC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 216
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 148
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 75
TseI GCWGC 4 cut(s) 6, 9, 12, 15
TspDTI ATGAA 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.