MD09G1225600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015997
Physical Location & Seq
Forward (+)
27836527 .. 27838046
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1225600.v1.1.491

Sequence Viewer

Length: 276 bp
ATGAGCAGCGAGGCCAAAACCAGTAGCGCAACTGCCCCCGGAGGAGGAGGAGGCGGTGGTGGAAGGGGATTTAGGGCGAGGATGGAGCACTACTTGTACAGCGGTGAGAAGAAGCACGTATTTGCAGGCCTCGTTATTATCAGCGCCGTCTTTGCCGTTCCTTGGTACCTCATGAATCGAGGGGCAAAGCACCAATCTCATCAAGACTACTTAGAAAAAGCTGATAAGGCAAGGAGTGAAAGACTTTCTTCAGGGACACCCGCCGCTGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.64

Weight (kDa)

9.91

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80890
fragaria_vesca FvH4_6g28500
malus_domestica MD09G1225600.v1.1 MD17G1224400.v1.1
prunus_persica Prupe.2G074900_v2.0.a1 Prupe.3G100100_v2.0.a1
pyrus_communis pycom09g14510
rosa_chinensis RchiOBHm_Chr2g0132751
rosa_multiflora Rmu_sc0004972.1_g000002 Rmu_ssc0000074.1_g000005
rosa_roxburghii Rroxscaffold_2G00111680
rosa_rugosa Rorug02G0307100
rosa_samantha Rh2BG365900 Rh2CG342800
rosa_wichuraiana Rw2G029260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 4 cut(s) 54, 102, 261, 264
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 2 cut(s) 98, 167
AfiI CCNNNNNNNGG 2 cut(s) 44, 162
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 90
AoxI GGCC 2 cut(s) 12, 127
ApeKI GCWGC 2 cut(s) 6, 266
Asp718I GGTACC 1 cut(s) 165
AspLEI GCGC 2 cut(s) 29, 146
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 18, 253
BccI CCATC 1 cut(s) 76
BceAI ACGGC 2 cut(s) 131, 140
BcnI CCSGG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 3 cut(s) 7, 264, 267
BlsI GCNGC 3 cut(s) 8, 265, 268
Bme1390I CCNGG 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 37, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 162
Bse1I ACTGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 37, 161
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 44, 162
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 3 cut(s) 57, 60, 63
BseXI GCAGC 2 cut(s) 18, 253
BshFI GGCC 2 cut(s) 14, 129
BshNI GGYRCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 2 cut(s) 44, 162
BsmFI GGGAC 1 cut(s) 268
BsnI GGCC 2 cut(s) 14, 129
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 1 cut(s) 96
BspACI CCGC 4 cut(s) 54, 102, 261, 264
BspANI GGCC 2 cut(s) 14, 129
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 37, 161
BssT1I CCWWGG 1 cut(s) 161
BstAUI TGTACA 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 29, 146
BstMWI GCNNNNNNNGC 2 cut(s) 152, 227
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 18, 253
BsuRI GGCC 2 cut(s) 14, 129
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 127
CciI TCATGA 1 cut(s) 171
CfoI GCGC 2 cut(s) 29, 146
Csp6I GTAC 2 cut(s) 97, 166
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 14, 129, 221
CviKI_1 RGCY 3 cut(s) 14, 129, 221
CviQI GTAC 2 cut(s) 97, 166
DdeI CTNAG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 161
Eco147I AGGCCT 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 1 cut(s) 175
FaiI YATR 1 cut(s) 173
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FaqI GGGAC 1 cut(s) 268
FatI CATG 1 cut(s) 171
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 7, 264, 267
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 3 cut(s) 7, 264, 267
GlaI GCGC 2 cut(s) 28, 145
GluI GCNGC 3 cut(s) 7, 264, 267
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 14, 129
HapII CCGG 1 cut(s) 39
HhaI GCGC 2 cut(s) 29, 146
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 2 cut(s) 27, 144
HinP1I GCGC 2 cut(s) 27, 144
HinfI GANTC 1 cut(s) 175
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 172, 203
HpyAV CCTTC 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 227
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 2 cut(s) 27, 144
KpnI GGTACC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 34, 52, 111, 237
Lsp1109I GCAGC 2 cut(s) 18, 253
MaeII ACGT 1 cut(s) 117
MboII GAAGA 2 cut(s) 121, 240
MhlI GDGCHC 1 cut(s) 90
MnlI CCTC 9 cut(s) 4, 35, 38, 41, 44, 72, 140, 173, 179
MspA1I CMGCKG 2 cut(s) 102, 266
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 152, 227
NciI CCSGG 1 cut(s) 39
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 167
PagI TCATGA 1 cut(s) 171
PceI AGGCCT 1 cut(s) 129
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 3 cut(s) 8, 265, 268
Ppu21I YACGTR 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 167
RsaI GTAC 2 cut(s) 98, 167
RsaNI GTAC 2 cut(s) 97, 166
SatI GCNGC 3 cut(s) 7, 264, 267
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 90
SetI ASST 3 cut(s) 120, 171, 223
SseBI AGGCCT 1 cut(s) 129
SsiI CCGC 4 cut(s) 54, 102, 261, 264
StuI AGGCCT 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 161
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 178
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 1 cut(s) 175
TseI GCWGC 2 cut(s) 6, 266
TspDTI ATGAA 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.