Rh2BG365900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015997
Physical Location & Seq
Reverse (-)
50901648 .. 50903385
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG365900.1

Sequence Viewer

Length: 195 bp
ATGAGTAGCGAGGCGAAAGGTGGAAAGGGGTTTAGAGCGAGGATGGAGCACTACTTGTACAGCGGCGACAAGAAGCACGTCATGGCCGGCATCGTTCTTATCAGCGCCGTCTTCGCCGTTCCTTGGTACCTCATGAACCGAGGTCTCATTTCTCCCCTTCTCTCTGTTTCTCTCCTCAATCTTATGTTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.16

Weight (kDa)

10.11

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80890
fragaria_vesca FvH4_6g28500
malus_domestica MD09G1225600.v1.1 MD17G1224400.v1.1
prunus_persica Prupe.2G074900_v2.0.a1 Prupe.3G100100_v2.0.a1
pyrus_communis pycom09g14510
rosa_chinensis RchiOBHm_Chr2g0132751
rosa_multiflora Rmu_sc0004972.1_g000002 Rmu_ssc0000074.1_g000005
rosa_roxburghii Rroxscaffold_2G00111680
rosa_rugosa Rorug02G0307100
rosa_samantha Rh2BG365900 Rh2CG342800
rosa_wichuraiana Rw2G029260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AciI CCGC 1 cut(s) 63
AcoI YGGCCR 1 cut(s) 84
AfaI GTAC 2 cut(s) 59, 128
AfiI CCNNNNNNNGG 1 cut(s) 123
AjiI CACGTC 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 84
Asp718I GGTACC 1 cut(s) 126
AspLEI GCGC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 92, 101
BcoDI GTCTC 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 122, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 122, 139
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 57
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 86
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 2 cut(s) 122, 139
BssT1I CCWWGG 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 86
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 107
Cfr10I RCCGGY 1 cut(s) 86
Csp6I GTAC 2 cut(s) 58, 127
CviAII CATG 2 cut(s) 82, 133
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
CviQI GTAC 2 cut(s) 58, 127
EaeI YGGCCR 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaeI CATG 2 cut(s) 85, 136
FaiI YATR 3 cut(s) 83, 134, 185
FatI CATG 2 cut(s) 81, 132
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 85, 136
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HpaII CCGG 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 85, 136
HspAI GCGC 1 cut(s) 105
KpnI GGTACC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 1 cut(s) 100
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 78
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 5 cut(s) 4, 33, 134, 140, 185
MroNI GCCGGC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 113
NaeI GCCGGC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 85, 136
NlaIV GGNNCC 1 cut(s) 128
PagI TCATGA 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 128
RsaI GTAC 2 cut(s) 59, 128
RsaNI GTAC 2 cut(s) 58, 127
SatI GCNGC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 51
SetI ASST 5 cut(s) 22, 81, 132, 145, 194
SfaNI GCATC 1 cut(s) 99
SsiI CCGC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 122
TaiI ACGT 1 cut(s) 81
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.