Prupe.3G100100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015997
Physical Location & Seq
Forward (+)
7676280 .. 7677785
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G100100.1

Sequence Viewer

Length: 276 bp
ATGAGCAGCGAGCCCAAAACCAGTAGCGCAACTGGAGGAGGAGGAGGAGGAGGAGGAGCAGGAGGAAGGGGATTTAGGGCGAAAATGGAGCACTACATGTACAGCGGTGAGAAGAAGCACGTATTTGCTGGCATCGTTCTTGTCAGCGCCGTCTTTGCCGTTCCTTGGTACCTCATGACTCGAGGGGCAAAGCATCAATCCCATCAAGATTACTTAGAGAAAGCTGATAAGGCAAGGAGCCAAAGACTTTCTTCAGGGGCTTCTTCTGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.55

Weight (kDa)

9.99

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80890
fragaria_vesca FvH4_6g28500
malus_domestica MD09G1225600.v1.1 MD17G1224400.v1.1
prunus_persica Prupe.2G074900_v2.0.a1 Prupe.3G100100_v2.0.a1
pyrus_communis pycom09g14510
rosa_chinensis RchiOBHm_Chr2g0132751
rosa_multiflora Rmu_sc0004972.1_g000002 Rmu_ssc0000074.1_g000005
rosa_roxburghii Rroxscaffold_2G00111680
rosa_rugosa Rorug02G0307100
rosa_samantha Rh2BG365900 Rh2CG342800
rosa_wichuraiana Rw2G029260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AciI CCGC 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 101, 170
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 96
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 6
Asp718I GGTACC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 29, 149
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 180
BanI GGYRCC 1 cut(s) 168
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 210
BceAI ACGGC 2 cut(s) 134, 143
BfoI RGCGCY 1 cut(s) 150
BisI GCNGC 1 cut(s) 7
BlsI GCNGC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 170, 239
BmsI GCATC 2 cut(s) 141, 202
BpmI CTGGAG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 2 cut(s) 21, 37
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 165
BseNI ACTGG 2 cut(s) 21, 37
BseRI GAGGAG 7 cut(s) 51, 54, 57, 60, 63, 66, 69
BseXI GCAGC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 15, 93
Bsp1407I TGTACA 1 cut(s) 99
BspACI CCGC 1 cut(s) 105
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 170, 239
BspT107I GGYRCC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 2 cut(s) 21, 37
BssECI CCNNGG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 99
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 11, 130
BstDEI CTNAG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 2 cut(s) 29, 149
BstMWI GCNNNNNNNGC 3 cut(s) 155, 230, 266
BstNSI RCATGY 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 11, 130
CciI TCATGA 1 cut(s) 174
CfoI GCGC 2 cut(s) 29, 149
Csp6I GTAC 2 cut(s) 100, 169
CviAII CATG 2 cut(s) 97, 175
CviJI RGCY 4 cut(s) 13, 224, 240, 260
CviKI_1 RGCY 4 cut(s) 13, 224, 240, 260
CviQI GTAC 2 cut(s) 100, 169
DdeI CTNAG 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 15
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 2 cut(s) 100, 178
FaiI YATR 2 cut(s) 98, 176
FalI AAGNNNNNCTT 2 cut(s) 235, 267
FatI CATG 2 cut(s) 96, 174
Fnu4HI GCNGC 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 7
GlaI GCGC 2 cut(s) 28, 148
GluI GCNGC 1 cut(s) 7
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 150
HhaI GCGC 2 cut(s) 29, 149
Hin1II CATG 2 cut(s) 100, 178
Hin6I GCGC 2 cut(s) 27, 147
HinP1I GCGC 2 cut(s) 27, 147
HinfI GANTC 1 cut(s) 178
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 175, 206
HpyAV CCTTC 1 cut(s) 60
HpyCH4IV ACGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 230, 266
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 2 cut(s) 100, 178
HspAI GCGC 2 cut(s) 27, 147
KpnI GGTACC 1 cut(s) 172
LmnI GCTCC 3 cut(s) 56, 88, 237
LpnPI CCDG 5 cut(s) 18, 34, 45, 114, 240
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 2 cut(s) 141, 202
MaeII ACGT 1 cut(s) 120
MboII GAAGA 3 cut(s) 124, 243, 255
MhlI GDGCHC 2 cut(s) 15, 93
MlyI GAGTC 1 cut(s) 172
MspA1I CMGCKG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 155, 230, 266
NlaIII CATG 2 cut(s) 100, 178
NlaIV GGNNCC 2 cut(s) 170, 239
NspI RCATGY 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 180
PagI TCATGA 1 cut(s) 174
PciI ACATGT 1 cut(s) 96
PkrI GCNGC 1 cut(s) 8
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 121
PscI ACATGT 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 170, 239
PspXI VCTCGAGB 1 cut(s) 180
RsaI GTAC 2 cut(s) 101, 170
RsaNI GTAC 2 cut(s) 100, 169
SatI GCNGC 1 cut(s) 7
SchI GAGTC 1 cut(s) 172
SduI GDGCHC 2 cut(s) 15, 93
SetI ASST 3 cut(s) 123, 174, 226
SfaNI GCATC 2 cut(s) 141, 202
Sfr274I CTCGAG 1 cut(s) 180
SlaI CTCGAG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SsiI CCGC 1 cut(s) 105
StyI CCWWGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 123
TaqI TCGA 1 cut(s) 181
TatI WGTACW 1 cut(s) 99
TseI GCWGC 1 cut(s) 6
XceI RCATGY 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.