Rorug02G0307100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015997
Physical Location & Seq
Reverse (-)
34750653 .. 34752382
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0307100.1

Sequence Viewer

Length: 1074 bp
ATGGGCTGCTCTTCTTCAACCCTTCGCACCAAAAACCACCCAGAACAACCACACCACCGCCCACAATCACAATGCTCTTCTTCTTCAGCTTCCATAAACTCCTCACCATTCCCACTCCGAAGAGCCCTCTCTCTTGTTCATCACCCACCTCTCAAAAAGGGCGACACCAACCACCTTGTCTCTCTCACCTCCACCACTTATGGTTCTCTCCGTATCATCGACCACCCTCTTCCTTCATCATCCCCATTATCATACACCAATCTCCACAGTCAGGATCAACCCCCAGACAAGTCCTCATCTTTTTCTCCCGACTCCGTCATCAACACCTGGGAACTTATGGACGGTCTTAACGATGAATCCCATTCTCATTCTTTTGCACAAAAACCACAATCTTCAGTGAAATTCATAGGAGCGCAAAAGAAGCCGCTATGGCAGCATTTATCAGAGGAATCATTGCTGGCAAAGATGGACCCCAATGTGGTTTCCACTTATAGGAGAGCTCTATCTTCTAGGGAATTGCGCACAACACTGCCTTTTAAGAGCCGCCCTTTGAATTGTTCTACTTCTTCTTCACCAGCACTGGTAAATTCCAATTCCAATACTTGTTTTCTTCTCCCGGGGAGTGAAGACAAAATCGTCGTCTACTCCACCAGTTTGAGAGGAATCCGAAAGACTTACGAGGATTGCTGCGCTGTTCGGATGATCTTCAGGGGGTTGCGGGTGGCTGTGGATGAGAGGGACATTTCAATGGACTCCCAGTACAAGAAAGAGTTGCAGAATGCAGTTAGAGGCAAAGCACCGGTGAGGCTGCCGCAAGTGTTTGTTAGAGGGAATTATATTGGAGGAGCCGAGGAGGTTAAGCAACTCAATGAGCTTGGAGAATTGGCATTGCTTTTGAAGGGGTTTCCTAGTGCTTCTGCGTTTGGTTGCGATGGATGTGGAGATGTGAGATTTGTGCCGTGTACTACCTGTAATGGCAGCCAAAAGTTGTTTGATGAAAACAAAGGGGAATTGAGGAGGTGCCCGCATTGCAACGAGAACGGATTGATTAGGTGCTCTGCTTGCTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

39.35

Weight (kDa)

8.86

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 212 - 280 9.2e-11 Glutaredoxin
GRXCR1-2_C PF23733 310 - 356 2.3e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80890
fragaria_vesca FvH4_6g28500
malus_domestica MD09G1225600.v1.1 MD17G1224400.v1.1
prunus_persica Prupe.2G074900_v2.0.a1 Prupe.3G100100_v2.0.a1
pyrus_communis pycom09g14510
rosa_chinensis RchiOBHm_Chr2g0132751
rosa_multiflora Rmu_sc0004972.1_g000002 Rmu_ssc0000074.1_g000005
rosa_roxburghii Rroxscaffold_2G00111680
rosa_rugosa Rorug02G0307100
rosa_samantha Rh2BG365900 Rh2CG342800
rosa_wichuraiana Rw2G029260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 635
Acc16I TGCGCA 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 1020
AccI GTMKAC 1 cut(s) 642
AciI CCGC 6 cut(s) 58, 425, 544, 718, 812, 1025
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 2 cut(s) 401, 586
AcuI CTGAAG 3 cut(s) 69, 378, 691
AfaI GTAC 2 cut(s) 761, 964
AfiI CCNNNNNNNGG 3 cut(s) 271, 478, 492
AgeI ACCGGT 1 cut(s) 799
AgsI TTSAA 4 cut(s) 18, 553, 747, 898
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 3 cut(s) 89, 500, 874
AluI AGCT 3 cut(s) 89, 500, 874
Alw21I GWGCWC 2 cut(s) 502, 1058
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 616
ApeKI GCWGC 5 cut(s) 6, 433, 687, 808, 978
ApoI RAATTY 2 cut(s) 401, 586
ArsI GACNNNNNNTTYG 2 cut(s) 624, 656
AsiGI ACCGGT 1 cut(s) 799
AspLEI GCGC 3 cut(s) 415, 522, 692
AspS9I GGNCC 1 cut(s) 469
AsuC2I CCSGG 2 cut(s) 617, 618
AsuHPI GGTGA 5 cut(s) 96, 134, 178, 564, 814
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 1025
BanI GGYRCC 1 cut(s) 1020
BanII GRGCYC 2 cut(s) 127, 502
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 502, 1058
BbvI GCAGC 4 cut(s) 445, 674, 795, 990
BccI CCATC 2 cut(s) 460, 926
BceAI ACGGC 1 cut(s) 943
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 2 cut(s) 617, 618
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 2 cut(s) 510, 909
BglI GCCNNNNNGGC 1 cut(s) 430
BisI GCNGC 8 cut(s) 7, 425, 434, 544, 688, 809, 812, 979
BlsI GCNGC 8 cut(s) 8, 426, 435, 545, 689, 810, 813, 980
Bme1390I CCNGG 3 cut(s) 328, 617, 618
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 3 cut(s) 471, 847, 1022
BmrFI CCNGG 3 cut(s) 328, 617, 618
BmrI ACTGGG 1 cut(s) 751
BmuI ACTGGG 1 cut(s) 751
BpiI GAAGAC 1 cut(s) 633
BpuMI CCSGG 2 cut(s) 617, 618
BsaJI CCNNGG 4 cut(s) 327, 616, 617, 849
BsaWI WCCGGW 1 cut(s) 799
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 478, 492
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 3 cut(s) 585, 651, 757
Bse3DI GCAATG 3 cut(s) 452, 887, 1027
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 4 cut(s) 327, 616, 617, 849
BseGI GGATG 4 cut(s) 239, 705, 736, 941
BseLI CCNNNNNNNGG 3 cut(s) 271, 478, 492
BseMI GCAATG 3 cut(s) 452, 887, 1027
BseNI ACTGG 3 cut(s) 585, 651, 757
BseRI GAGGAG 4 cut(s) 91, 858, 866, 1030
BseSI GKGCMC 1 cut(s) 1025
BseXI GCAGC 4 cut(s) 445, 674, 795, 990
BshNI GGYRCC 1 cut(s) 1020
BshTI ACCGGT 1 cut(s) 799
BsiHKAI GWGCWC 2 cut(s) 502, 1058
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 2 cut(s) 617, 800
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 3 cut(s) 271, 478, 492
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 784
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 4 cut(s) 127, 502, 1025, 1058
Bsp143I GATC 2 cut(s) 274, 702
BspACI CCGC 6 cut(s) 58, 425, 544, 718, 812, 1025
BspLI GGNNCC 3 cut(s) 471, 847, 1022
BspPI GGATC 1 cut(s) 282
BspQI GCTCTTC 3 cut(s) 16, 82, 115
BspT107I GGYRCC 1 cut(s) 1020
BsrDI GCAATG 3 cut(s) 452, 887, 1027
BsrFI RCCGGY 1 cut(s) 799
BsrI ACTGG 3 cut(s) 585, 651, 757
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 4 cut(s) 327, 616, 617, 849
BssMI GATC 2 cut(s) 274, 702
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 269, 344
Bst6I CTCTTC 4 cut(s) 16, 82, 115, 234
BstC8I GCNNGC 3 cut(s) 459, 1025, 1063
BstF5I GGATG 4 cut(s) 239, 705, 736, 941
BstHHI GCGC 3 cut(s) 415, 522, 692
BstKTI GATC 2 cut(s) 277, 705
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 2 cut(s) 274, 702
BstMWI GCNNNNNNNGC 5 cut(s) 421, 430, 433, 1029, 1062
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 3 cut(s) 326, 615, 616
BstSLI GKGCMC 1 cut(s) 1025
BstV1I GCAGC 4 cut(s) 445, 674, 795, 990
BstV2I GAAGAC 1 cut(s) 633
BtgZI GCGATG 1 cut(s) 945
BtsCI GGATG 4 cut(s) 239, 705, 736, 941
BtsI GCAGTG 1 cut(s) 527
BtsIMutI CAGTG 3 cut(s) 402, 527, 578
Cac8I GCNNGC 3 cut(s) 459, 1025, 1063
CfoI GCGC 3 cut(s) 415, 522, 692
Cfr10I RCCGGY 1 cut(s) 799
Cfr13I GGNCC 1 cut(s) 469
Cfr9I CCCGGG 1 cut(s) 616
Csp6I GTAC 2 cut(s) 760, 963
CspAI ACCGGT 1 cut(s) 799
CviQI GTAC 2 cut(s) 760, 963
DpnI GATC 2 cut(s) 276, 704
DpnII GATC 2 cut(s) 274, 702
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
Eam1104I CTCTTC 4 cut(s) 16, 82, 115, 234
EarI CTCTTC 4 cut(s) 16, 82, 115, 234
Ecl136II GAGCTC 1 cut(s) 500
Eco24I GRGCYC 2 cut(s) 127, 502
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 500
Eco57I CTGAAG 3 cut(s) 69, 378, 691
Eco88I CYCGRG 1 cut(s) 616
EcoICRI GAGCTC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 326
EcoT38I GRGCYC 2 cut(s) 127, 502
FaiI YATR 8 cut(s) 95, 201, 253, 338, 407, 430, 492, 837
FaqI GGGAC 1 cut(s) 752
FauI CCCGC 2 cut(s) 711, 1032
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 8 cut(s) 7, 425, 434, 544, 688, 809, 812, 979
FokI GGATG 4 cut(s) 226, 712, 743, 948
FriOI GRGCYC 2 cut(s) 127, 502
Fsp4HI GCNGC 8 cut(s) 7, 425, 434, 544, 688, 809, 812, 979
FspBI CTAG 2 cut(s) 510, 909
FspI TGCGCA 1 cut(s) 521
GlaI GCGC 3 cut(s) 414, 521, 691
GluI GCNGC 8 cut(s) 7, 425, 434, 544, 688, 809, 812, 979
HapII CCGG 2 cut(s) 617, 800
HhaI GCGC 3 cut(s) 415, 522, 692
Hin6I GCGC 3 cut(s) 413, 520, 690
HinP1I GCGC 3 cut(s) 413, 520, 690
HinfI GANTC 5 cut(s) 311, 356, 449, 663, 752
HpaII CCGG 2 cut(s) 617, 800
HphI GGTGA 5 cut(s) 96, 134, 178, 564, 814
Hpy166II GTNNAC 2 cut(s) 643, 963
Hpy188I TCNGA 4 cut(s) 119, 445, 668, 699
Hpy188III TCNNGA 2 cut(s) 272, 308
Hpy8I GTNNAC 2 cut(s) 643, 963
Hpy99I CGWCG 1 cut(s) 641
HpyAV CCTTC 3 cut(s) 32, 243, 892
HpyCH4III ACNGT 2 cut(s) 269, 344
HpyCH4V TGCA 4 cut(s) 377, 775, 782, 1032
HpyF10VI GCNNNNNNNGC 5 cut(s) 421, 430, 433, 1029, 1062
HspAI GCGC 3 cut(s) 413, 520, 690
Kzo9I GATC 2 cut(s) 274, 702
LguI GCTCTTC 3 cut(s) 16, 82, 115
LmnI GCTCC 2 cut(s) 410, 845
Lsp1109I GCAGC 4 cut(s) 445, 674, 795, 990
MaeI CTAG 2 cut(s) 510, 909
MalI GATC 2 cut(s) 276, 704
MboI GATC 2 cut(s) 274, 702
MhlI GDGCHC 4 cut(s) 127, 502, 1025, 1058
MluCI AATT 8 cut(s) 401, 515, 553, 586, 592, 832, 881, 1010
MlyI GAGTC 2 cut(s) 305, 746
MseI TTAA 3 cut(s) 348, 537, 858
MslI CAYNNNNRTG 1 cut(s) 746
MspI CCGG 2 cut(s) 617, 800
MspR9I CCNGG 3 cut(s) 328, 617, 618
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 5 cut(s) 421, 430, 433, 1029, 1062
NciI CCSGG 2 cut(s) 617, 618
NdeII GATC 2 cut(s) 274, 702
NlaIV GGNNCC 3 cut(s) 471, 847, 1022
NmeAIII GCCGAG 1 cut(s) 874
NsbI TGCGCA 1 cut(s) 521
PciSI GCTCTTC 3 cut(s) 16, 82, 115
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 3 cut(s) 356, 449, 663
PflFI GACNNNGTC 1 cut(s) 314
PinAI ACCGGT 1 cut(s) 799
PkrI GCNGC 8 cut(s) 8, 426, 435, 545, 689, 810, 813, 980
PleI GAGTC 2 cut(s) 305, 746
PpsI GAGTC 2 cut(s) 305, 746
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 471, 847, 1022
PspPI GGNCC 1 cut(s) 469
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 2 cut(s) 761, 964
RsaNI GTAC 2 cut(s) 760, 963
RseI CAYNNNNRTG 1 cut(s) 746
SacI GAGCTC 1 cut(s) 502
SapI GCTCTTC 3 cut(s) 16, 82, 115
SaqAI TTAA 3 cut(s) 348, 537, 858
SatI GCNGC 8 cut(s) 7, 425, 434, 544, 688, 809, 812, 979
Sau3AI GATC 2 cut(s) 274, 702
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 2 cut(s) 305, 746
ScrFI CCNGG 3 cut(s) 328, 617, 618
SduI GDGCHC 4 cut(s) 127, 502, 1025, 1058
SgrAI CRCCGGYG 1 cut(s) 799
SinI GGWCC 1 cut(s) 469
SmaI CCCGGG 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 746
Sse9I AATT 8 cut(s) 401, 515, 553, 586, 592, 832, 881, 1010
SsiI CCGC 6 cut(s) 58, 425, 544, 718, 812, 1025
SspMI CTAG 2 cut(s) 510, 909
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 3 cut(s) 326, 615, 616
TaaI ACNGT 2 cut(s) 269, 344
TaqI TCGA 1 cut(s) 219
TasI AATT 8 cut(s) 401, 515, 553, 586, 592, 832, 881, 1010
TatI WGTACW 2 cut(s) 759, 962
TauI GCSGC 3 cut(s) 427, 546, 814
TfiI GAWTC 3 cut(s) 356, 449, 663
Tru1I TTAA 3 cut(s) 348, 537, 858
Tru9I TTAA 3 cut(s) 348, 537, 858
TscAI CASTG 3 cut(s) 402, 534, 585
TseI GCWGC 5 cut(s) 6, 433, 687, 808, 978
TspDTI ATGAA 5 cut(s) 128, 225, 369, 394, 1011
TspGWI ACGGA 3 cut(s) 200, 304, 1056
TspMI CCCGGG 1 cut(s) 616
TspRI CASTG 3 cut(s) 402, 534, 585
Tth111I GACNNNGTC 1 cut(s) 314
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 401, 586
XmaI CCCGGG 1 cut(s) 616
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 2 cut(s) 510, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.