MD17G1224400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015997
Physical Location & Seq
Forward (+)
27285508 .. 27287335
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1224400.v1.1.491

Sequence Viewer

Length: 291 bp
ATGAGCAGCGAGGCCAAAACCAATAGCACAACAGCTGCAGGAAGAGGAGGAGGAAGCGGTGGCGGTGGTGGTGGCGGAAGGGGATTTAGGGCGAGGATGGAGCACTACTTGTACAGCGGTGAGAAGAAGCACGTATTTGCAGGCATCGTTATTATCAGCGCCGTCTTTGCCGTTCCTTGGTACCTCATGAATCGAGGGGCAAAGCATCAATCTCATCAAGATTACTTGGAAAAAGCTGATAAGGCAAGGAGTCAAAGACTTTCTTCCGGGGCGCCTGCCGCTGCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.06

Weight (kDa)

10.22

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015997)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80890
fragaria_vesca FvH4_6g28500
malus_domestica MD09G1225600.v1.1 MD17G1224400.v1.1
prunus_persica Prupe.2G074900_v2.0.a1 Prupe.3G100100_v2.0.a1
pyrus_communis pycom09g14510
rosa_chinensis RchiOBHm_Chr2g0132751
rosa_multiflora Rmu_sc0004972.1_g000002 Rmu_ssc0000074.1_g000005
rosa_roxburghii Rroxscaffold_2G00111680
rosa_rugosa Rorug02G0307100
rosa_samantha Rh2BG365900 Rh2CG342800
rosa_wichuraiana Rw2G029260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 2 cut(s) 180, 271
AciI CCGC 5 cut(s) 57, 63, 75, 117, 279
AcyI GRCGYC 1 cut(s) 272
AfaI GTAC 2 cut(s) 113, 182
AfiI CCNNNNNNNGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 35, 236
AluI AGCT 2 cut(s) 35, 236
Alw21I GWGCWC 1 cut(s) 105
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 3 cut(s) 6, 35, 281
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 2 cut(s) 161, 274
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 131
BanI GGYRCC 2 cut(s) 180, 271
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 18, 22, 268
BccI CCATC 1 cut(s) 91
BceAI ACGGC 2 cut(s) 146, 155
BcnI CCSGG 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 2 cut(s) 162, 275
BisI GCNGC 4 cut(s) 7, 36, 279, 282
BlsI GCNGC 4 cut(s) 8, 37, 280, 283
Bme1390I CCNGG 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 182, 273
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 2 cut(s) 153, 214
BpuMI CCSGG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 176, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 176, 267
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 60, 63
BseXI GCAGC 3 cut(s) 18, 22, 268
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 2 cut(s) 180, 271
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 105
Bsp1407I TGTACA 1 cut(s) 111
BspACI CCGC 5 cut(s) 57, 63, 75, 117, 279
BspANI GGCC 1 cut(s) 14
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 182, 273
BspMAI CTGCAG 1 cut(s) 40
BspT107I GGYRCC 2 cut(s) 180, 271
BsrGI TGTACA 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 176, 267
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 142, 276
BstF5I GGATG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 162, 275
BstHHI GCGC 2 cut(s) 161, 274
BstMWI GCNNNNNNNGC 3 cut(s) 167, 242, 278
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 18, 22, 268
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 142, 276
CciI TCATGA 1 cut(s) 186
CfoI GCGC 2 cut(s) 161, 274
Csp6I GTAC 2 cut(s) 112, 181
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 14, 35, 236
CviKI_1 RGCY 3 cut(s) 14, 35, 236
CviQI GTAC 2 cut(s) 112, 181
DinI GGCGCC 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
EciI GGCGGA 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 176
EgeI GGCGCC 1 cut(s) 273
EheI GGCGCC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 190
FaiI YATR 1 cut(s) 188
FalI AAGNNNNNCTT 2 cut(s) 247, 279
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 4 cut(s) 7, 36, 279, 282
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 7, 36, 279, 282
GlaI GCGC 2 cut(s) 160, 273
GluI GCNGC 4 cut(s) 7, 36, 279, 282
HaeII RGCGCY 2 cut(s) 162, 275
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 267
HhaI GCGC 2 cut(s) 161, 274
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 2 cut(s) 159, 272
HinP1I GCGC 2 cut(s) 159, 272
HinfI GANTC 2 cut(s) 190, 250
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 187, 218
HpyAV CCTTC 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 38, 140
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 242, 278
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 2 cut(s) 159, 272
KasI GGCGCC 1 cut(s) 271
KpnI GGTACC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 24, 126, 280
Lsp1109I GCAGC 3 cut(s) 18, 22, 268
LweI GCATC 2 cut(s) 153, 214
MaeII ACGT 1 cut(s) 132
MboII GAAGA 3 cut(s) 54, 136, 255
MhlI GDGCHC 1 cut(s) 105
Mly113I GGCGCC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 7 cut(s) 4, 38, 41, 44, 87, 188, 194
MspA1I CMGCKG 3 cut(s) 35, 117, 281
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 167, 242, 278
NarI GGCGCC 1 cut(s) 272
NciI CCSGG 1 cut(s) 268
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 2 cut(s) 182, 273
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 4 cut(s) 8, 37, 280, 283
PleI GAGTC 1 cut(s) 258
PluTI GGCGCC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 258
Ppu21I YACGTR 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 182, 273
PstI CTGCAG 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 113, 182
RsaNI GTAC 2 cut(s) 112, 181
SatI GCNGC 4 cut(s) 7, 36, 279, 282
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 1 cut(s) 105
SetI ASST 4 cut(s) 37, 135, 186, 238
SfaNI GCATC 2 cut(s) 153, 214
SfcI CTRYAG 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 273
SsiI CCGC 5 cut(s) 57, 63, 75, 117, 279
SspDI GGCGCC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 176
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 193
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 1 cut(s) 190
TseI GCWGC 3 cut(s) 6, 35, 281
TspDTI ATGAA 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.