FvH4_6g28600

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016888
Physical Location & Seq
Reverse (-)
22058104 .. 22062853
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28600.t1

Sequence Viewer

Length: 1230 bp
ATGGTGCTAAAGATAGCTGCAGAGGATTCACCGTCGTCAGCGACTCTTGATGAGGTGTGCATGGTGGTGGTGAGGGAATACAATGAAGAAAGTGACAAGGTGGCGGTGGAAGAGATGGAGAGGCTGTGTGAAATGGCTGGGCAGCGTGGGGGAAAGCAGCCTTCTCTTGTCACTGATCTCTTGGGTGACCCCAAATGTCGCATCCGCCATTTCCCGACCCACATAATGCTGGTTGCAGTGTACGGAGAACAAAAGGAAATTGTGGGTGTCATCAGGGGTTGTGTAAAAAAGGTAACAAGAGGTAATTCAGTGTTTGTAAAGCTGGCTTATATCCTGGGACTAAGGGTTTCTCCCATGCACAGGAGGCTTGGCATTGGTACAAAACTAGTGAAACATTTAGAAGAATGGTGCAAGCAAAAGGGAGCAGAATATGCATACATGGCCACAGACTGCACCAACGAGGCTTCAATCAATTTGTTCACACTCAAGTGCTCATACCAAAAGTTTCGCACACCGACCATCTTAGTCCAGCCAGTTCACGCCCACTACAAACCAGTACCTTCCACCATCGCCATCGTTCGACTACCCGCCTGCTTAGCCGAGTCGATCTACCGCCAAATCTATGCCAACTCGGAATTCTTCCCGGAAGATATAGACGCCATTTTATCTAGTGCCCTAAATCTAGGCACTTTCATGGCCCTGCCCAGAAAATACCTTCTGAAATGGGACCCTAAGAAAAGCACATTCCCCCCTAGAAGTGCTTTTGCCATCCTCAGCGTTTGGAACACCAAACAAGTGTTCAAGCTACAAGTGAAGGGAGTGTCCAAGTTGACACAGGCATGTTGCGTGGGAAGTAGACTAGTGGATGCATGGCTTCCATGGCTCAGACTGCCTTCATTTCCAAACGTTTTCAAGCAGTTCGGGGTGTATTTTATGTACGGGTTACATGCCGATCAGGGCAAGCACGGGTTGCGGTTGATGAAGGGTTTGTGCAACTTCGTGCACAATGTGGGAAGGGATGACCATGGATGCGCTGCCGTGGTGGCGGAGGTGAGCCAGAGAGACCCAGTTAGAGAGGCAGTCCCACATTGGACGAAGCTTTCATGGGCTGAGGATATGTGGTGTGTCAAGAAGCTCACAGAAGCCAAGCAAGGACTGTCGTCGCCGTCGGATTGGATTAACTCTCGACCATCTTCACCGATGATATTTGTTGACCCTCGTGACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

410

Amino Acids

46.11

Weight (kDa)

9.1

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 70 - 161 5e-16 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 76 - 157 1.9e-07 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016888)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28600
malus_domestica MD09G1224900.v1.1
prunus_persica Prupe.3G098400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0132941
rosa_laevigata RLG00000019294
rosa_multiflora Rmu_co8485787.1_g000001 Rmu_sc0001314.1_g000006
rosa_roxburghii Rroxscaffold_2G00111600
rosa_rugosa Rorug02G0308600
rosa_samantha Rh2AG361000 Rh2BG366900 Rh2CG344300 Rh2DG383900
rosa_wichuraiana Rw2G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 856
AciI CCGC 6 cut(s) 104, 205, 588, 613, 973, 1046
AclI AACGTT 1 cut(s) 906
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 657
AdeI CACNNNGTG 1 cut(s) 1009
AfaI GTAC 4 cut(s) 242, 379, 558, 938
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 3 cut(s) 468, 802, 913
AhlI ACTAGT 2 cut(s) 385, 859
AjnI CCWGG 1 cut(s) 333
AjuI GAANNNNNNNTTGG 4 cut(s) 620, 652, 782, 814
AleI CACNNNNGTG 1 cut(s) 487
AluBI AGCT 5 cut(s) 17, 322, 805, 1099, 1135
AluI AGCT 5 cut(s) 17, 322, 805, 1099, 1135
Alw21I GWGCWC 2 cut(s) 494, 1005
Alw26I GTCTC 1 cut(s) 1056
Alw44I GTGCAC 1 cut(s) 1001
AoxI GGCC 2 cut(s) 441, 696
ApaLI GTGCAC 1 cut(s) 1001
ApeKI GCWGC 4 cut(s) 17, 142, 157, 1034
ApoI RAATTY 1 cut(s) 635
AspLEI GCGC 1 cut(s) 1034
AspS9I GGNCC 2 cut(s) 697, 727
AsuC2I CCSGG 1 cut(s) 644
AsuHPI GGTGA 5 cut(s) 21, 82, 197, 1063, 1188
AvaII GGWCC 1 cut(s) 727
BaeGI GKGCMC 2 cut(s) 676, 1005
BalI TGGCCA 1 cut(s) 443
BauI CACGAG 1 cut(s) 1218
Bbv12I GWGCWC 2 cut(s) 494, 1005
BbvCI CCTCAGC 2 cut(s) 773, 1110
BbvI GCAGC 4 cut(s) 4, 154, 169, 1021
BccI CCATC 6 cut(s) 109, 527, 575, 581, 776, 1198
BceAI ACGGC 2 cut(s) 1022, 1150
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 644
BcoDI GTCTC 1 cut(s) 1056
BcuI ACTAGT 2 cut(s) 385, 859
BfaI CTAG 5 cut(s) 386, 669, 683, 753, 860
BfmI CTRYAG 1 cut(s) 18
BglI GCCNNNNNGGC 1 cut(s) 1043
BisI GCNGC 4 cut(s) 18, 143, 158, 1035
BlpI GCTNAGC 1 cut(s) 595
BlsI GCNGC 4 cut(s) 19, 144, 159, 1036
Bme1390I CCNGG 2 cut(s) 335, 644
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 697, 727
BmiI GGNNCC 2 cut(s) 728, 729
BmrFI CCNGG 2 cut(s) 335, 644
BmrI ACTGGG 1 cut(s) 1061
BmsI GCATC 3 cut(s) 210, 856, 1019
BmuI ACTGGG 1 cut(s) 1061
BoxI GACNNNNGTC 1 cut(s) 1159
Bpu10I CCTNAGC 2 cut(s) 773, 1110
Bpu1102I GCTNAGC 1 cut(s) 595
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 644
BsaHI GRCGYC 1 cut(s) 657
BsaI GGTCTC 1 cut(s) 1056
BsaJI CCNNGG 4 cut(s) 334, 878, 1024, 1038
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 3 cut(s) 533, 554, 1067
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 4 cut(s) 334, 878, 1024, 1038
BseGI GGATG 5 cut(s) 201, 768, 871, 1024, 1034
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 787, 898, 1101
BseNI ACTGG 3 cut(s) 533, 554, 1067
BseSI GKGCMC 2 cut(s) 676, 1005
BseXI GCAGC 4 cut(s) 4, 154, 169, 1021
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 2 cut(s) 443, 698
BsiHKAI GWGCWC 2 cut(s) 494, 1005
BsiSI CCGG 1 cut(s) 644
BslFI GGGAC 3 cut(s) 351, 740, 1067
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 1 cut(s) 1056
BsmFI GGGAC 3 cut(s) 351, 740, 1067
BsnI GGCC 2 cut(s) 443, 698
Bso31I GGTCTC 1 cut(s) 1056
Bsp1286I GDGCHC 3 cut(s) 494, 676, 1005
Bsp143I GATC 3 cut(s) 175, 606, 952
Bsp1720I GCTNAGC 1 cut(s) 595
Bsp19I CCATGG 2 cut(s) 878, 1024
BspACI CCGC 6 cut(s) 104, 205, 588, 613, 973, 1046
BspANI GGCC 2 cut(s) 443, 698
BspCNI CTCAG 3 cut(s) 786, 897, 1102
BspLI GGNNCC 2 cut(s) 728, 729
BspMAI CTGCAG 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 1056
BsrI ACTGG 3 cut(s) 533, 554, 1067
BssECI CCNNGG 4 cut(s) 334, 878, 1024, 1038
BssMI GATC 3 cut(s) 175, 606, 952
BssNI GRCGYC 1 cut(s) 657
BssSI CACGAG 1 cut(s) 1218
BssT1I CCWWGG 2 cut(s) 878, 1024
Bst2BI CACGAG 1 cut(s) 1218
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 33, 1158
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 657
BstAPI GCANNNNNTGC 2 cut(s) 431, 970
BstC8I GCNNGC 4 cut(s) 324, 413, 592, 962
BstDEI CTNAG 7 cut(s) 341, 523, 595, 732, 773, 884, 1110
BstDSI CCRYGG 3 cut(s) 878, 1024, 1038
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 5 cut(s) 201, 768, 871, 1024, 1034
BstHHI GCGC 1 cut(s) 1034
BstKTI GATC 3 cut(s) 178, 609, 955
BstMAI GTCTC 1 cut(s) 1056
BstMBI GATC 3 cut(s) 175, 606, 952
BstMWI GCNNNNNNNGC 8 cut(s) 364, 431, 440, 596, 880, 889, 970, 1043
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 2 cut(s) 843, 950
BstPAI GACNNNNGTC 1 cut(s) 1159
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 333, 642
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 2 cut(s) 676, 1005
BstV1I GCAGC 4 cut(s) 4, 154, 169, 1021
BsuRI GGCC 2 cut(s) 443, 698
BtgI CCRYGG 3 cut(s) 878, 1024, 1038
BtgZI GCGATG 1 cut(s) 553
BtsCI GGATG 5 cut(s) 201, 768, 871, 1024, 1034
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 171, 243, 315
Cac8I GCNNGC 4 cut(s) 324, 413, 592, 962
CfoI GCGC 1 cut(s) 1034
Cfr13I GGNCC 2 cut(s) 697, 727
CseI GACGC 1 cut(s) 665
Csp6I GTAC 4 cut(s) 241, 378, 557, 937
CviQI GTAC 4 cut(s) 241, 378, 557, 937
DdeI CTNAG 7 cut(s) 341, 523, 595, 732, 773, 884, 1110
DpnI GATC 3 cut(s) 177, 608, 954
DpnII GATC 3 cut(s) 175, 606, 952
DraIII CACNNNGTG 1 cut(s) 1009
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 2 cut(s) 194, 1061
Eco130I CCWWGG 2 cut(s) 878, 1024
Eco31I GGTCTC 1 cut(s) 1056
Eco47I GGWCC 1 cut(s) 727
Eco91I GGTNACC 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 727
EcoO65I GGTNACC 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 878, 1024
EcoT22I ATGCAT 2 cut(s) 436, 871
ErhI CCWWGG 2 cut(s) 878, 1024
FaqI GGGAC 3 cut(s) 351, 740, 1067
FauI CCCGC 1 cut(s) 595
FblI GTMKAC 1 cut(s) 856
Fnu4HI GCNGC 4 cut(s) 18, 143, 158, 1035
FokI GGATG 5 cut(s) 188, 755, 878, 1031, 1041
Fsp4HI GCNGC 4 cut(s) 18, 143, 158, 1035
FspBI CTAG 5 cut(s) 386, 669, 683, 753, 860
GlaI GCGC 1 cut(s) 1033
GluI GCNGC 4 cut(s) 18, 143, 158, 1035
GsaI CCCAGC 1 cut(s) 141
HaeIII GGCC 2 cut(s) 443, 698
HapII CCGG 1 cut(s) 644
HgaI GACGC 1 cut(s) 665
HhaI GCGC 1 cut(s) 1034
Hin1I GRCGYC 1 cut(s) 657
Hin6I GCGC 1 cut(s) 1032
HinP1I GCGC 1 cut(s) 1032
HincII GTYRAC 2 cut(s) 831, 1213
HindII GTYRAC 2 cut(s) 831, 1213
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 3 cut(s) 26, 43, 602
HpaII CCGG 1 cut(s) 644
HphI GGTGA 5 cut(s) 21, 82, 197, 1063, 1188
Hpy166II GTNNAC 7 cut(s) 241, 480, 538, 831, 857, 1003, 1213
Hpy188I TCNGA 4 cut(s) 634, 720, 887, 1171
Hpy188III TCNNGA 5 cut(s) 47, 214, 1129, 1185, 1220
Hpy8I GTNNAC 7 cut(s) 241, 480, 538, 831, 857, 1003, 1213
Hpy99I CGWCG 3 cut(s) 37, 1165, 1171
HpyAV CCTTC 7 cut(s) 171, 570, 725, 808, 903, 976, 1008
HpyCH4III ACNGT 2 cut(s) 33, 1158
HpyCH4IV ACGT 1 cut(s) 906
HpyF10VI GCNNNNNNNGC 8 cut(s) 364, 431, 440, 596, 880, 889, 970, 1043
HpyF3I CTNAG 7 cut(s) 341, 523, 595, 732, 773, 884, 1110
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 1 cut(s) 657
HspAI GCGC 1 cut(s) 1032
KflI GGGWCCC 1 cut(s) 727
Kzo9I GATC 3 cut(s) 175, 606, 952
LmnI GCTCC 1 cut(s) 422
Lsp1109I GCAGC 4 cut(s) 4, 154, 169, 1021
LweI GCATC 3 cut(s) 210, 856, 1019
MaeI CTAG 5 cut(s) 386, 669, 683, 753, 860
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 6 cut(s) 92, 169, 185, 292, 942, 1220
MalI GATC 3 cut(s) 177, 608, 954
MboI GATC 3 cut(s) 175, 606, 952
MboII GAAGA 6 cut(s) 98, 122, 413, 631, 659, 1185
MhlI GDGCHC 3 cut(s) 494, 676, 1005
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 4 cut(s) 258, 304, 472, 635
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 37, 611
MmeI TCCRAC 1 cut(s) 1149
Mox20I TGGCCA 1 cut(s) 443
Mph1103I ATGCAT 2 cut(s) 436, 871
MscI TGGCCA 1 cut(s) 443
MseI TTAA 2 cut(s) 1179, 1228
MslI CAYNNNNRTG 4 cut(s) 65, 487, 692, 838
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 1 cut(s) 644
MspR9I CCNGG 2 cut(s) 335, 644
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 8 cut(s) 364, 431, 440, 596, 880, 889, 970, 1043
NciI CCSGG 1 cut(s) 644
NcoI CCATGG 2 cut(s) 878, 1024
NdeII GATC 3 cut(s) 175, 606, 952
NlaIV GGNNCC 2 cut(s) 728, 729
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 4 cut(s) 92, 169, 185, 1220
NsiI ATGCAT 2 cut(s) 436, 871
NspI RCATGY 2 cut(s) 843, 950
OliI CACNNNNGTG 1 cut(s) 487
PfeI GAWTC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 642
PkrI GCNGC 4 cut(s) 19, 144, 159, 1036
PleI GAGTC 2 cut(s) 37, 610
PpsI GAGTC 2 cut(s) 37, 610
PpuMI RGGWCCY 1 cut(s) 727
PshAI GACNNNNGTC 1 cut(s) 1159
Psp1406I AACGTT 1 cut(s) 906
Psp5II RGGWCCY 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 333
PspEI GGTNACC 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 728, 729
PspPI GGNCC 2 cut(s) 697, 727
PspPPI RGGWCCY 1 cut(s) 727
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 4 cut(s) 242, 379, 558, 938
RsaNI GTAC 4 cut(s) 241, 378, 557, 937
RseI CAYNNNNRTG 4 cut(s) 65, 487, 692, 838
SaqAI TTAA 2 cut(s) 1179, 1228
SatI GCNGC 4 cut(s) 18, 143, 158, 1035
Sau3AI GATC 3 cut(s) 175, 606, 952
Sau96I GGNCC 2 cut(s) 697, 727
SchI GAGTC 2 cut(s) 37, 611
ScrFI CCNGG 2 cut(s) 335, 644
SduI GDGCHC 3 cut(s) 494, 676, 1005
SfaNI GCATC 3 cut(s) 210, 856, 1019
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 727
SmiMI CAYNNNNRTG 4 cut(s) 65, 487, 692, 838
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 2 cut(s) 385, 859
Sse9I AATT 4 cut(s) 258, 304, 472, 635
SsiI CCGC 6 cut(s) 104, 205, 588, 613, 973, 1046
SspMI CTAG 5 cut(s) 386, 669, 683, 753, 860
StyD4I CCNGG 2 cut(s) 333, 642
StyI CCWWGG 2 cut(s) 878, 1024
TaaI ACNGT 2 cut(s) 33, 1158
TaiI ACGT 1 cut(s) 909
TaqI TCGA 3 cut(s) 580, 605, 1186
TasI AATT 4 cut(s) 258, 304, 472, 635
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 1179, 1228
Tru9I TTAA 2 cut(s) 1179, 1228
TscAI CASTG 3 cut(s) 178, 243, 315
TseFI GTSAC 4 cut(s) 92, 169, 185, 1220
TseI GCWGC 4 cut(s) 17, 142, 157, 1034
Tsp45I GTSAC 4 cut(s) 92, 169, 185, 1220
TspDTI ATGAA 5 cut(s) 99, 682, 885, 995, 1092
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 3 cut(s) 178, 243, 315
VneI GTGCAC 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 727
XapI RAATTY 1 cut(s) 635
XceI RCATGY 2 cut(s) 843, 950
XmiI GTMKAC 1 cut(s) 856
XspI CTAG 5 cut(s) 386, 669, 683, 753, 860
Zsp2I ATGCAT 2 cut(s) 436, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.