Rroxscaffold_2G00111600

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016888
Physical Location & Seq
Forward (+)
36226219 .. 36228838
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111600.1

Sequence Viewer

Length: 1131 bp
ATGGTGCTAAAGGTAGCTGCAGAGGATCCACCAGTAGCTACAGTTGATGAGGTGATGGTGGTGAGAGAGTACAATGAAGAAAGTGATAAGGTAGCGGTGGAGGAGATGGAGAGGCGGTGTGAGATGGCTGGGCAGAGGGGAAGGCCTTCTCTTGTCACTGATCTCTTGGGTGACCCAAAATGTCGCATTCGGCATTTCCCAACACACATAATGCTGGCTTTAGACTGCAGATTTCGGAATAATGATGTACGCACTTGGAAGTTTTTCTGGAGGCTTGGCATTGGTACAAAACTAGTGAAACATTTAGAAGAATGGTGCAAGCAAAAGGGAGCAGAATATGCATACATGGCCACAGACTGCACCAACGAGGCCTCAATCAATTTGTTCACACTGAAATGCTCATACCAAAAATTTCGCACACCCACCATTTTAGTCCAGCCAGTTCACGCCCACTACAAACCAATACCTTCCAGCATTGCCATTGTTCGACTACCCGTCTACCTAGCGGAGTCGATCTACCGTCAAATTTATGCCCATTCTGAATTCTTCCCAGAAGATATGGATGTCATTTTATCTAGTGCCTTAAATTTGGGCACTTTCATGGCGCTGCCCAAAAAATACCTTCCGAAATGGGACCCACAGAAAAGCACTTTTCCCCCTGGTGCTTTTGCCATCCTCAGCGTTTGGAACACCAAAGAAGTGTTCAAGCTACAAGTGAAAGGAATGTCGAAGTTGACACGCGCATGTTGCGTGGGAAGTAGGCTAGTGGATGCATGGCTTCCATGGCTGAGACTGCCTTCATTTCCAAACTTTTTTAAGCAGTTCGGGGTGTATTTTATGTACGGATTACATGCGGAGGGCAAGCACGGGTTGCGGTTGATGAAGGATTTGTGCAACTTTGTGCACAATGTGGGTAGGGATGACCATGGATGTGCTGCCGTGGTGGCGGAGGTGTGCCAGAGAGACCCAGTTAGAGAGGCAATCCCACATTGGAGAAAATTTTCATGGGCTGAGGACATGTGGTGTGTCAAGAGGCTCACAGAAGCCAAGCAAGGACTGCCGTCGCCATCGGATTGGATTAACTCTCGACCGTCTTCACCGATGATTTTTGTTGACCCTCGTGACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

376

Amino Acids

43.34

Weight (kDa)

8.82

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 88 - 130 1e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016888)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28600
malus_domestica MD09G1224900.v1.1
prunus_persica Prupe.3G098400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0132941
rosa_laevigata RLG00000019294
rosa_multiflora Rmu_co8485787.1_g000001 Rmu_sc0001314.1_g000006
rosa_roxburghii Rroxscaffold_2G00111600
rosa_rugosa Rorug02G0308600
rosa_samantha Rh2AG361000 Rh2BG366900 Rh2CG344300 Rh2DG383900
rosa_wichuraiana Rw2G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 498
AccII CGCG 1 cut(s) 741
AciI CCGC 6 cut(s) 95, 115, 506, 854, 874, 947
AclWI GGATC 2 cut(s) 20, 33
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 5 cut(s) 410, 525, 542, 586, 998
AdeI CACNNNGTG 1 cut(s) 910
AfaI GTAC 4 cut(s) 71, 249, 286, 842
AflIII ACRYGT 1 cut(s) 1017
AgsI TTSAA 1 cut(s) 706
AhdI GACNNNNNGTC 1 cut(s) 494
AhlI ACTAGT 1 cut(s) 292
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 3 cut(s) 17, 38, 709
AluI AGCT 3 cut(s) 17, 38, 709
Alw21I GWGCWC 1 cut(s) 906
Alw26I GTCTC 2 cut(s) 784, 957
Alw44I GTGCAC 1 cut(s) 902
AlwI GGATC 2 cut(s) 20, 33
AoxI GGCC 3 cut(s) 143, 348, 369
ApaLI GTGCAC 1 cut(s) 902
ApeKI GCWGC 3 cut(s) 17, 607, 935
ApoI RAATTY 5 cut(s) 410, 525, 542, 586, 998
Asp700I GAANNNNTTC 3 cut(s) 145, 263, 1000
AspLEI GCGC 2 cut(s) 607, 743
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 4 cut(s) 64, 73, 182, 1089
AvaII GGWCC 1 cut(s) 634
BaeGI GKGCMC 2 cut(s) 596, 906
BalI TGGCCA 1 cut(s) 350
BamHI GGATCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 1 cut(s) 906
BbvCI CCTCAGC 2 cut(s) 677, 1011
BbvI GCAGC 3 cut(s) 4, 594, 922
BccI CCATC 5 cut(s) 49, 100, 118, 680, 1075
BceAI ACGGC 2 cut(s) 923, 1045
BciT130I CCWGG 1 cut(s) 660
BcoDI GTCTC 2 cut(s) 784, 957
BcuI ACTAGT 1 cut(s) 292
BfaI CTAG 4 cut(s) 293, 503, 576, 764
BfmI CTRYAG 3 cut(s) 18, 39, 226
BfoI RGCGCY 1 cut(s) 608
BglI GCCNNNNNGGC 1 cut(s) 944
BisI GCNGC 3 cut(s) 18, 608, 936
BlsI GCNGC 3 cut(s) 19, 609, 937
Bme1390I CCNGG 1 cut(s) 660
Bme18I GGWCC 1 cut(s) 634
BmeRI GACNNNNNGTC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 3 cut(s) 27, 635, 636
BmrFI CCNGG 1 cut(s) 660
BmrI ACTGGG 1 cut(s) 962
BmsI GCATC 1 cut(s) 760
BmuI ACTGGG 1 cut(s) 962
BoxI GACNNNNGTC 1 cut(s) 1060
BpiI GAAGAC 1 cut(s) 1086
BpmI CTGGAG 1 cut(s) 289
Bpu10I CCTNAGC 2 cut(s) 677, 1011
BsaI GGTCTC 1 cut(s) 957
BsaJI CCNNGG 4 cut(s) 658, 782, 925, 939
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse1I ACTGG 3 cut(s) 32, 440, 968
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 658, 782, 925, 939
BseGI GGATG 5 cut(s) 568, 672, 775, 925, 935
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 3 cut(s) 691, 779, 1002
BseNI ACTGG 3 cut(s) 32, 440, 968
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 2 cut(s) 596, 906
BseXI GCAGC 3 cut(s) 4, 594, 922
BseYI CCCAGC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 741
Bsh1285I CGRYCG 1 cut(s) 1091
BshFI GGCC 3 cut(s) 145, 350, 371
BsiEI CGRYCG 1 cut(s) 1091
BsiHKAI GWGCWC 1 cut(s) 906
BslFI GGGAC 1 cut(s) 647
BsmAI GTCTC 2 cut(s) 784, 957
BsmFI GGGAC 1 cut(s) 647
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 3 cut(s) 145, 350, 371
Bso31I GGTCTC 1 cut(s) 957
Bsp1286I GDGCHC 2 cut(s) 596, 906
Bsp143I GATC 3 cut(s) 25, 160, 513
Bsp19I CCATGG 2 cut(s) 782, 925
BspACI CCGC 6 cut(s) 95, 115, 506, 854, 874, 947
BspANI GGCC 3 cut(s) 145, 350, 371
BspCNI CTCAG 3 cut(s) 690, 780, 1003
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 3 cut(s) 27, 635, 636
BspMAI CTGCAG 2 cut(s) 22, 230
BspPI GGATC 2 cut(s) 20, 33
BspTNI GGTCTC 1 cut(s) 957
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 3 cut(s) 32, 440, 968
BssECI CCNNGG 4 cut(s) 658, 782, 925, 939
BssMI GATC 3 cut(s) 25, 160, 513
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 2 cut(s) 782, 925
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 3 cut(s) 43, 521, 1092
BstAPI GCANNNNNTGC 3 cut(s) 338, 871, 1057
BstC8I GCNNGC 3 cut(s) 216, 320, 863
BstDEI CTNAG 3 cut(s) 677, 788, 1011
BstDSI CCRYGG 3 cut(s) 782, 925, 939
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 5 cut(s) 568, 672, 775, 925, 935
BstFNI CGCG 1 cut(s) 741
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 2 cut(s) 607, 743
BstKTI GATC 3 cut(s) 28, 163, 516
BstMAI GTCTC 2 cut(s) 784, 957
BstMBI GATC 3 cut(s) 25, 160, 513
BstMCI CGRYCG 1 cut(s) 1091
BstMWI GCNNNNNNNGC 8 cut(s) 338, 347, 747, 784, 793, 871, 944, 1057
BstNI CCWGG 1 cut(s) 660
BstNSI RCATGY 3 cut(s) 747, 854, 1021
BstPAI GACNNNNGTC 1 cut(s) 1060
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 658
BstSFI CTRYAG 3 cut(s) 18, 39, 226
BstSLI GKGCMC 2 cut(s) 596, 906
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 3 cut(s) 4, 594, 922
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 1074
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 3 cut(s) 145, 350, 371
BtgI CCRYGG 3 cut(s) 782, 925, 939
BtsCI GGATG 5 cut(s) 568, 672, 775, 925, 935
BtsIMutI CAGTG 2 cut(s) 156, 389
Cac8I GCNNGC 3 cut(s) 216, 320, 863
CfoI GCGC 2 cut(s) 607, 743
Cfr13I GGNCC 1 cut(s) 634
Csp6I GTAC 4 cut(s) 70, 248, 285, 841
CviAII CATG 9 cut(s) 346, 601, 744, 774, 783, 851, 926, 1005, 1018
CviQI GTAC 4 cut(s) 70, 248, 285, 841
DdeI CTNAG 3 cut(s) 677, 788, 1011
DpnI GATC 3 cut(s) 27, 162, 515
DpnII GATC 3 cut(s) 25, 160, 513
DraIII CACNNNGTG 1 cut(s) 910
DriI GACNNNNNGTC 1 cut(s) 494
EaeI YGGCCR 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 494
EciI GGCGGA 1 cut(s) 962
Eco130I CCWWGG 2 cut(s) 782, 925
Eco147I AGGCCT 2 cut(s) 145, 371
Eco31I GGTCTC 1 cut(s) 957
Eco47I GGWCC 1 cut(s) 634
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 542
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 2 cut(s) 782, 925
EcoT22I ATGCAT 2 cut(s) 343, 775
ErhI CCWWGG 2 cut(s) 782, 925
FaeI CATG 9 cut(s) 349, 604, 747, 777, 786, 854, 929, 1008, 1021
FaqI GGGAC 1 cut(s) 647
FatI CATG 9 cut(s) 345, 600, 743, 773, 782, 850, 925, 1004, 1017
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 3 cut(s) 18, 608, 936
FokI GGATG 5 cut(s) 575, 659, 782, 932, 942
Fsp4HI GCNGC 3 cut(s) 18, 608, 936
FspBI CTAG 4 cut(s) 293, 503, 576, 764
GlaI GCGC 2 cut(s) 606, 742
GluI GCNGC 3 cut(s) 18, 608, 936
GsaI CCCAGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 289
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 3 cut(s) 145, 350, 371
HhaI GCGC 2 cut(s) 607, 743
Hin1II CATG 9 cut(s) 349, 604, 747, 777, 786, 854, 929, 1008, 1021
Hin6I GCGC 2 cut(s) 605, 741
HinP1I GCGC 2 cut(s) 605, 741
HincII GTYRAC 2 cut(s) 735, 1114
HindII GTYRAC 2 cut(s) 735, 1114
HinfI GANTC 1 cut(s) 509
HphI GGTGA 4 cut(s) 64, 73, 182, 1089
Hpy166II GTNNAC 6 cut(s) 387, 445, 499, 735, 904, 1114
Hpy188I TCNGA 4 cut(s) 237, 541, 627, 1072
Hpy188III TCNNGA 4 cut(s) 268, 1030, 1086, 1121
Hpy8I GTNNAC 6 cut(s) 387, 445, 499, 735, 904, 1114
Hpy99I CGWCG 1 cut(s) 1066
HpyAV CCTTC 6 cut(s) 135, 156, 477, 632, 807, 877
HpyCH4III ACNGT 3 cut(s) 43, 521, 1092
HpyCH4V TGCA 8 cut(s) 20, 228, 318, 341, 360, 773, 894, 904
HpyF10VI GCNNNNNNNGC 8 cut(s) 338, 347, 747, 784, 793, 871, 944, 1057
HpyF3I CTNAG 3 cut(s) 677, 788, 1011
Hsp92II CATG 9 cut(s) 349, 604, 747, 777, 786, 854, 929, 1008, 1021
HspAI GCGC 2 cut(s) 605, 741
KflI GGGWCCC 1 cut(s) 634
Kzo9I GATC 3 cut(s) 25, 160, 513
LmnI GCTCC 1 cut(s) 329
Lsp1109I GCAGC 3 cut(s) 4, 594, 922
LweI GCATC 1 cut(s) 760
MaeI CTAG 4 cut(s) 293, 503, 576, 764
MaeIII GTNAC 3 cut(s) 154, 170, 1121
MalI GATC 3 cut(s) 27, 162, 515
MboI GATC 3 cut(s) 25, 160, 513
MboII GAAGA 5 cut(s) 89, 320, 538, 566, 1086
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 596, 906
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 6 cut(s) 379, 410, 525, 542, 586, 998
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 518
Mox20I TGGCCA 1 cut(s) 350
Mph1103I ATGCAT 2 cut(s) 343, 775
MroXI GAANNNNTTC 3 cut(s) 145, 263, 1000
MscI TGGCCA 1 cut(s) 350
MseI TTAA 4 cut(s) 584, 816, 1080, 1129
MslI CAYNNNNRTG 4 cut(s) 394, 599, 742, 930
Msp20I TGGCCA 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 660
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 8 cut(s) 338, 347, 747, 784, 793, 871, 944, 1057
NcoI CCATGG 2 cut(s) 782, 925
NdeII GATC 3 cut(s) 25, 160, 513
NlaIII CATG 9 cut(s) 349, 604, 747, 777, 786, 854, 929, 1008, 1021
NlaIV GGNNCC 3 cut(s) 27, 635, 636
NmuCI GTSAC 3 cut(s) 154, 170, 1121
NsiI ATGCAT 2 cut(s) 343, 775
NspI RCATGY 3 cut(s) 747, 854, 1021
PceI AGGCCT 2 cut(s) 145, 371
PciI ACATGT 1 cut(s) 1017
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 3 cut(s) 145, 263, 1000
PkrI GCNGC 3 cut(s) 19, 609, 937
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 1017
PshAI GACNNNNGTC 1 cut(s) 1060
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 658
PspEI GGTNACC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 3 cut(s) 27, 635, 636
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PstI CTGCAG 2 cut(s) 22, 230
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 4 cut(s) 71, 249, 286, 842
RsaNI GTAC 4 cut(s) 70, 248, 285, 841
RseI CAYNNNNRTG 4 cut(s) 394, 599, 742, 930
SaqAI TTAA 4 cut(s) 584, 816, 1080, 1129
SatI GCNGC 3 cut(s) 18, 608, 936
Sau3AI GATC 3 cut(s) 25, 160, 513
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 1 cut(s) 518
ScrFI CCNGG 1 cut(s) 660
SduI GDGCHC 2 cut(s) 596, 906
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 3 cut(s) 18, 39, 226
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 4 cut(s) 394, 599, 742, 930
SpeI ACTAGT 1 cut(s) 292
Sse9I AATT 6 cut(s) 379, 410, 525, 542, 586, 998
SseBI AGGCCT 2 cut(s) 145, 371
SsiI CCGC 6 cut(s) 95, 115, 506, 854, 874, 947
SspMI CTAG 4 cut(s) 293, 503, 576, 764
StuI AGGCCT 2 cut(s) 145, 371
StyD4I CCNGG 1 cut(s) 658
StyI CCWWGG 2 cut(s) 782, 925
TaaI ACNGT 3 cut(s) 43, 521, 1092
TaqI TCGA 4 cut(s) 487, 512, 728, 1087
TasI AATT 6 cut(s) 379, 410, 525, 542, 586, 998
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 4 cut(s) 584, 816, 1080, 1129
Tru9I TTAA 4 cut(s) 584, 816, 1080, 1129
TscAI CASTG 2 cut(s) 163, 396
TseFI GTSAC 3 cut(s) 154, 170, 1121
TseI GCWGC 3 cut(s) 17, 607, 935
Tsp45I GTSAC 3 cut(s) 154, 170, 1121
TspDTI ATGAA 5 cut(s) 90, 589, 789, 896, 993
TspGWI ACGGA 1 cut(s) 858
TspRI CASTG 2 cut(s) 163, 396
VneI GTGCAC 1 cut(s) 902
VpaK11BI GGWCC 1 cut(s) 634
XapI RAATTY 5 cut(s) 410, 525, 542, 586, 998
XceI RCATGY 3 cut(s) 747, 854, 1021
XmiI GTMKAC 1 cut(s) 498
XmnI GAANNNNTTC 3 cut(s) 145, 263, 1000
XspI CTAG 4 cut(s) 293, 503, 576, 764
Zsp2I ATGCAT 2 cut(s) 343, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.