Rmu_co8485787.1_g000001

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8485787.1
OG0016888
Physical Location & Seq
Reverse (-)
933 .. 1718
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8485787.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
atggccacagactgcaccaacgaggcctcaatcaatttgttcacactaaaatgctcataccaaaaatttcgcacacccaccgttttaggtcagccagttcacgcccactacaaaccaataccttccagcattgccattgttcgactacccgtctgcctagccgagtcgatctaccgtcaaatttatgcccattctgaattcttcccagaagatatggatgtcattttatctagtgccttaaatttgggcaccttcatggcgctgcccaaaaaataccttccgaaatgggacccacagaaaagcacttttccccctggtgcttttgccatcctaagcgtttggaacaccaaagaagtgttcaagctacaagtgaaaggaatgtcgaagttggcgcgcgcatgttgcgtgggaagtaggctagtggatgcatggcttccatggctgagactgccttcatttccaaacgtttttaagcagttcggggtgtattttatgtacggattacatgcggagggcaagcacgggttgcggttgatgaaggatttgtgcaactttgtgcacaatgtgggtagggatgaccatggatgtgctgccgtggtggcggaggtgagccagagagacccagttagagaggcaatcccacattggagaaaattttcatgggctgaggacatgtggtgtgtcaagaagctcacagaagccaagcaaggactgccgtcaccatcggattggattaactcccgaccgtcttcaccaatgatttttgttgaccctcgtgacttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

261

Amino Acids

29.67

Weight (kDa)

9.07

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016888)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28600
malus_domestica MD09G1224900.v1.1
prunus_persica Prupe.3G098400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0132941
rosa_laevigata RLG00000019294
rosa_multiflora Rmu_co8485787.1_g000001 Rmu_sc0001314.1_g000006
rosa_roxburghii Rroxscaffold_2G00111600
rosa_rugosa Rorug02G0308600
rosa_samantha Rh2AG361000 Rh2BG366900 Rh2CG344300 Rh2DG383900
rosa_wichuraiana Rw2G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccII CGCG 2 cut(s) 394, 396
AciI CCGC 3 cut(s) 509, 529, 602
AclI AACGTT 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 65, 180, 197, 241, 653
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 1 cut(s) 497
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 1 cut(s) 361
AhdI GACNNNNNGTC 1 cut(s) 149
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 2 cut(s) 364, 691
AluI AGCT 2 cut(s) 364, 691
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 2 cut(s) 439, 612
Alw44I GTGCAC 1 cut(s) 557
AoxI GGCC 2 cut(s) 3, 24
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 2 cut(s) 262, 590
ApoI RAATTY 5 cut(s) 65, 180, 197, 241, 653
Asp700I GAANNNNTTC 1 cut(s) 655
AspLEI GCGC 4 cut(s) 262, 394, 396, 398
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 3 cut(s) 619, 711, 744
AvaII GGWCC 1 cut(s) 289
BaeGI GKGCMC 2 cut(s) 251, 561
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 248
BauI CACGAG 1 cut(s) 774
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 561
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 2 cut(s) 249, 577
BccI CCATC 2 cut(s) 335, 730
BceAI ACGGC 2 cut(s) 578, 700
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 439, 612
BfaI CTAG 3 cut(s) 158, 231, 419
BfoI RGCGCY 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 599
BisI GCNGC 2 cut(s) 263, 591
BlsI GCNGC 2 cut(s) 264, 592
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 289
BmeRI GACNNNNNGTC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 3 cut(s) 250, 290, 291
BmrFI CCNGG 1 cut(s) 315
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 741
Bpu10I CCTNAGC 2 cut(s) 332, 666
BsaI GGTCTC 1 cut(s) 612
BsaJI CCNNGG 4 cut(s) 313, 437, 580, 594
Bse1I ACTGG 2 cut(s) 95, 623
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 4 cut(s) 313, 437, 580, 594
BseGI GGATG 5 cut(s) 223, 327, 430, 580, 590
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 434, 657
BseNI ACTGG 2 cut(s) 95, 623
BsePI GCGCGC 2 cut(s) 392, 394
BseSI GKGCMC 2 cut(s) 251, 561
BseXI GCAGC 2 cut(s) 249, 577
Bsh1236I CGCG 2 cut(s) 394, 396
Bsh1285I CGRYCG 1 cut(s) 746
BshFI GGCC 2 cut(s) 5, 26
BshNI GGYRCC 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 561
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 2 cut(s) 439, 612
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 5, 26
Bso31I GGTCTC 1 cut(s) 612
Bsp1286I GDGCHC 2 cut(s) 251, 561
Bsp143I GATC 1 cut(s) 168
Bsp19I CCATGG 2 cut(s) 437, 580
BspACI CCGC 3 cut(s) 509, 529, 602
BspANI GGCC 2 cut(s) 5, 26
BspCNI CTCAG 2 cut(s) 435, 658
BspFNI CGCG 2 cut(s) 394, 396
BspLI GGNNCC 3 cut(s) 250, 290, 291
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 2 cut(s) 95, 623
BssECI CCNNGG 4 cut(s) 313, 437, 580, 594
BssHII GCGCGC 2 cut(s) 392, 394
BssMI GATC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 2 cut(s) 437, 580
Bst2BI CACGAG 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 82, 176, 747
BstAPI GCANNNNNTGC 2 cut(s) 526, 712
BstC8I GCNNGC 3 cut(s) 394, 396, 518
BstDEI CTNAG 3 cut(s) 332, 443, 666
BstDSI CCRYGG 3 cut(s) 437, 580, 594
BstF5I GGATG 5 cut(s) 223, 327, 430, 580, 590
BstFNI CGCG 2 cut(s) 394, 396
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 4 cut(s) 262, 394, 396, 398
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 2 cut(s) 439, 612
BstMBI GATC 1 cut(s) 168
BstMCI CGRYCG 1 cut(s) 746
BstMWI GCNNNNNNNGC 6 cut(s) 402, 439, 448, 526, 599, 712
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 3 cut(s) 402, 509, 676
BstPAI GACNNNNGTC 1 cut(s) 715
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 251, 561
BstUI CGCG 2 cut(s) 394, 396
BstV1I GCAGC 2 cut(s) 249, 577
BstV2I GAAGAC 1 cut(s) 741
BstXI CCANNNNNNTGG 1 cut(s) 729
BsuRI GGCC 2 cut(s) 5, 26
BtgI CCRYGG 3 cut(s) 437, 580, 594
BtsCI GGATG 5 cut(s) 223, 327, 430, 580, 590
Cac8I GCNNGC 3 cut(s) 394, 396, 518
CfoI GCGC 4 cut(s) 262, 394, 396, 398
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 496
CviAII CATG 8 cut(s) 256, 399, 429, 438, 506, 581, 660, 673
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 332, 443, 666
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
DraIII CACNNNGTG 1 cut(s) 565
DriI GACNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 617
Eco130I CCWWGG 2 cut(s) 437, 580
Eco147I AGGCCT 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 2 cut(s) 437, 580
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 437, 580
FaeI CATG 8 cut(s) 259, 402, 432, 441, 509, 584, 663, 676
FaqI GGGAC 1 cut(s) 302
FatI CATG 8 cut(s) 255, 398, 428, 437, 505, 580, 659, 672
Fnu4HI GCNGC 2 cut(s) 263, 591
FokI GGATG 5 cut(s) 230, 314, 437, 587, 597
Fsp4HI GCNGC 2 cut(s) 263, 591
FspBI CTAG 3 cut(s) 158, 231, 419
GlaI GCGC 4 cut(s) 261, 393, 395, 397
GluI GCNGC 2 cut(s) 263, 591
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 2 cut(s) 5, 26
HhaI GCGC 4 cut(s) 262, 394, 396, 398
Hin1II CATG 8 cut(s) 259, 402, 432, 441, 509, 584, 663, 676
Hin6I GCGC 4 cut(s) 260, 392, 394, 396
HinP1I GCGC 4 cut(s) 260, 392, 394, 396
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 1 cut(s) 164
HphI GGTGA 3 cut(s) 619, 711, 744
Hpy166II GTNNAC 4 cut(s) 42, 100, 559, 769
Hpy188I TCNGA 3 cut(s) 196, 282, 727
Hpy188III TCNNGA 3 cut(s) 685, 741, 776
Hpy8I GTNNAC 4 cut(s) 42, 100, 559, 769
HpyAV CCTTC 5 cut(s) 132, 262, 287, 462, 532
HpyCH4III ACNGT 3 cut(s) 82, 176, 747
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 4 cut(s) 15, 428, 549, 559
HpyF10VI GCNNNNNNNGC 6 cut(s) 402, 439, 448, 526, 599, 712
HpyF3I CTNAG 3 cut(s) 332, 443, 666
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 8 cut(s) 259, 402, 432, 441, 509, 584, 663, 676
HspAI GCGC 4 cut(s) 260, 392, 394, 396
KflI GGGWCCC 1 cut(s) 289
Kzo9I GATC 1 cut(s) 168
LpnPI CCDG 7 cut(s) 108, 139, 219, 300, 327, 626, 636
Lsp1109I GCAGC 2 cut(s) 249, 577
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 158, 231, 419
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 2 cut(s) 717, 776
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 3 cut(s) 193, 221, 741
MhlI GDGCHC 2 cut(s) 251, 561
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 34, 65, 180, 197, 241, 653
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 7 cut(s) 16, 37, 505, 598, 625, 661, 783
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 655
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 239, 471, 735, 784
MslI CAYNNNNRTG 3 cut(s) 49, 254, 585
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 2 cut(s) 394, 396
MwoI GCNNNNNNNGC 6 cut(s) 402, 439, 448, 526, 599, 712
NcoI CCATGG 2 cut(s) 437, 580
NdeII GATC 1 cut(s) 168
NlaIII CATG 8 cut(s) 259, 402, 432, 441, 509, 584, 663, 676
NlaIV GGNNCC 3 cut(s) 250, 290, 291
NmeAIII GCCGAG 1 cut(s) 187
NmuCI GTSAC 2 cut(s) 717, 776
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 3 cut(s) 402, 509, 676
PauI GCGCGC 2 cut(s) 392, 394
PceI AGGCCT 1 cut(s) 26
PciI ACATGT 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 655
PkrI GCNGC 2 cut(s) 264, 592
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PpuMI RGGWCCY 1 cut(s) 289
PscI ACATGT 1 cut(s) 672
PshAI GACNNNNGTC 1 cut(s) 715
Psp1406I AACGTT 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 250, 290, 291
PspPI GGNCC 1 cut(s) 289
PspPPI RGGWCCY 1 cut(s) 289
PteI GCGCGC 2 cut(s) 392, 394
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
RseI CAYNNNNRTG 3 cut(s) 49, 254, 585
SaqAI TTAA 4 cut(s) 239, 471, 735, 784
SatI GCNGC 2 cut(s) 263, 591
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 251, 561
SetI ASST 8 cut(s) 91, 124, 254, 279, 366, 468, 609, 693
SfaNI GCATC 1 cut(s) 415
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 3 cut(s) 49, 254, 585
Sse9I AATT 6 cut(s) 34, 65, 180, 197, 241, 653
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 3 cut(s) 509, 529, 602
SspMI CTAG 3 cut(s) 158, 231, 419
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 313
StyI CCWWGG 2 cut(s) 437, 580
TaaI ACNGT 3 cut(s) 82, 176, 747
TaiI ACGT 1 cut(s) 468
TaqI TCGA 3 cut(s) 142, 167, 383
TasI AATT 6 cut(s) 34, 65, 180, 197, 241, 653
Tru1I TTAA 4 cut(s) 239, 471, 735, 784
Tru9I TTAA 4 cut(s) 239, 471, 735, 784
TseFI GTSAC 2 cut(s) 717, 776
TseI GCWGC 2 cut(s) 262, 590
Tsp45I GTSAC 2 cut(s) 717, 776
TspDTI ATGAA 4 cut(s) 244, 444, 551, 648
TspGWI ACGGA 1 cut(s) 513
VneI GTGCAC 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 5 cut(s) 65, 180, 197, 241, 653
XceI RCATGY 3 cut(s) 402, 509, 676
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 3 cut(s) 158, 231, 419
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.