RLG00000019294

Acetyltransferase (GNAT) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016888
Physical Location & Seq
Reverse (-)
49785446 .. 49787728
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019294

Sequence Viewer

Length: 1209 bp
ATGGTGCCGAAGGTAGCTGCAGAGGATTCACCAGCAGCTAAAGTTGATGAGGTGATGGTGGTGAGAGAGTACAATGAAGAAAGTGATAAGGTGGCGGTGGAGGAGATGGAGAGGCGGTGTGAGATGGCTGAGCAGAGGGGAAGACCTTCTCTTGTCACTGATCTCTTGGGTGACCCAAAATGTCGCATTCGGCATTTCCCAACACACATAATGCTGGTTGCACTATACGGAGAACAAAAGGAAATTGTGGGTGTCATAAGGGGTTGTGTAAAAAAGGTAACAAGAGGAAATTCAGTGTTTGTGAAGCTGGCTTATATCCTGGGACTAAGGGTCTCTCCCATGCACAGGAGGCTTGGCATTGGTACAAAACTAGTGAAACATTTAGAAGAATGGTGCAAGCAAAAGGGAGCAGAATACGCATACATGGCCACAGACTGCGCCAACGAGGCCTCAATCAATTTGTTCACACTGAAATGCTCATACCAAAAGTTTCGCACACCGACCGTTTTAGTCCAGCCAGTTCACGCCCACTACAAACCAATACCTTCCAGTGTTGCCATCGTTCGACTACCCGCCTACCTAGCCGAGTCGATCTACCGTCAAATTTATGCCCATTCTGAATTCTTCCCAGAAGATATAGATGTTATTTTATCTAGTGACTTAAATTTGGGCACTTTCATGGCGTTGCCCAAAAAATACCTTTCGAAATGGGACCCACAGAAAACCACTTTTCCCCTTGGTGCTTTTGCCATCCTCAGCGTTTGGAACACCAAAGAAGTGTTCAAGCTACAAATGAAAGGAATGTCGAAGTTGACCCGCGCATGTTGCGTGGGAAGTAGGCTAGTGGATGCATGGCTTCCATGGCTGAGACTGCCTTCATTTCCAAACGTTTTTAAGCAGTTCGGGGTGTATTTTATGTACGGATTACATGCGGAGGGCAAGCACGGGTTGCGGTTGATGAAGGGTTTGTGCAACTTTGTGCACAATGTGGGTAGGGATGACCATGGATGTGCTGCCGTGGTGGCGGAGGTAAGCCAGAGAGACCCAGTGAGAGAGGCAATTCCATATTGGAGAAAATTTTCATGGGCTGAGGACGTGTGGTGTGTCAAGAAGCTCACAGAAGCCAAACAAGGACTGCCGTCGTCATCGGATTGGATCAACTCTCGACCGTCTTCACCGATGATTTTTGTTGACCCTCGTGACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

403

Amino Acids

45.72

Weight (kDa)

9.1

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 64 - 156 3.5e-16 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 70 - 142 2.7e-07 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016888)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28600
malus_domestica MD09G1224900.v1.1
prunus_persica Prupe.3G098400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0132941
rosa_laevigata RLG00000019294
rosa_multiflora Rmu_co8485787.1_g000001 Rmu_sc0001314.1_g000006
rosa_roxburghii Rroxscaffold_2G00111600
rosa_rugosa Rorug02G0308600
rosa_samantha Rh2AG361000 Rh2BG366900 Rh2CG344300 Rh2DG383900
rosa_wichuraiana Rw2G029360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 819
AciI CCGC 7 cut(s) 95, 115, 573, 817, 932, 952, 1025
AclI AACGTT 1 cut(s) 888
AclWI GGATC 1 cut(s) 1163
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 5 cut(s) 289, 603, 620, 664, 1076
AdeI CACNNNGTG 1 cut(s) 988
AfaI GTAC 3 cut(s) 71, 364, 920
AfiI CCNNNNNNNGG 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 1095
AgsI TTSAA 1 cut(s) 784
AhdI GACNNNNNGTC 1 cut(s) 329
AhlI ACTAGT 1 cut(s) 370
AjiI CACGTC 1 cut(s) 1096
AjnI CCWGG 1 cut(s) 318
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 5 cut(s) 17, 38, 307, 787, 1114
AluI AGCT 5 cut(s) 17, 38, 307, 787, 1114
Alw21I GWGCWC 1 cut(s) 984
Alw26I GTCTC 3 cut(s) 337, 862, 1035
Alw44I GTGCAC 1 cut(s) 980
AlwI GGATC 1 cut(s) 1163
AoxI GGCC 2 cut(s) 426, 447
ApaLI GTGCAC 1 cut(s) 980
ApeKI GCWGC 3 cut(s) 17, 35, 1013
ApoI RAATTY 5 cut(s) 289, 603, 620, 664, 1076
Asp700I GAANNNNTTC 2 cut(s) 145, 1078
AspLEI GCGC 2 cut(s) 440, 821
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 5 cut(s) 21, 64, 73, 182, 1167
AsuII TTCGAA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 712
BaeGI GKGCMC 2 cut(s) 674, 984
BalI TGGCCA 1 cut(s) 428
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 1197
BbsI GAAGAC 2 cut(s) 148, 1164
Bbv12I GWGCWC 1 cut(s) 984
BbvCI CCTCAGC 2 cut(s) 755, 1089
BbvI GCAGC 3 cut(s) 4, 47, 1000
BccI CCATC 5 cut(s) 49, 100, 118, 566, 758
BceAI ACGGC 2 cut(s) 1001, 1123
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 3 cut(s) 337, 862, 1035
BcuI ACTAGT 1 cut(s) 370
BfaI CTAG 4 cut(s) 371, 581, 654, 842
BfmI CTRYAG 1 cut(s) 18
BglI GCCNNNNNGGC 2 cut(s) 446, 1022
BisI GCNGC 3 cut(s) 18, 36, 1014
BlpI GCTNAGC 1 cut(s) 129
BlsI GCNGC 3 cut(s) 19, 37, 1015
Bme1390I CCNGG 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 712
BmeRI GACNNNNNGTC 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 1096
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 3 cut(s) 6, 713, 714
BmrFI CCNGG 1 cut(s) 320
BmrI ACTGGG 1 cut(s) 1040
BmsI GCATC 1 cut(s) 838
BmuI ACTGGG 1 cut(s) 1040
BoxI GACNNNNGTC 1 cut(s) 1138
BpiI GAAGAC 2 cut(s) 148, 1164
Bpu10I CCTNAGC 2 cut(s) 755, 1089
Bpu1102I GCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 704
BsaI GGTCTC 2 cut(s) 337, 1035
BsaJI CCNNGG 5 cut(s) 319, 736, 860, 1003, 1017
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 3 cut(s) 518, 549, 1046
BseBI CCWGG 1 cut(s) 320
BseDI CCNNGG 5 cut(s) 319, 736, 860, 1003, 1017
BseGI GGATG 4 cut(s) 750, 853, 1003, 1013
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 4 cut(s) 120, 769, 857, 1080
BseNI ACTGG 3 cut(s) 518, 549, 1046
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 2 cut(s) 674, 984
BseXI GCAGC 3 cut(s) 4, 47, 1000
Bsh1236I CGCG 1 cut(s) 819
Bsh1285I CGRYCG 2 cut(s) 504, 1169
BshFI GGCC 2 cut(s) 428, 449
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 2 cut(s) 504, 1169
BsiHKAI GWGCWC 1 cut(s) 984
BslFI GGGAC 2 cut(s) 336, 725
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 337, 862, 1035
BsmFI GGGAC 2 cut(s) 336, 725
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 2 cut(s) 428, 449
Bso31I GGTCTC 2 cut(s) 337, 1035
Bsp119I TTCGAA 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 674, 984
Bsp143I GATC 3 cut(s) 160, 591, 1155
Bsp1720I GCTNAGC 1 cut(s) 129
Bsp19I CCATGG 2 cut(s) 860, 1003
BspACI CCGC 7 cut(s) 95, 115, 573, 817, 932, 952, 1025
BspANI GGCC 2 cut(s) 428, 449
BspCNI CTCAG 4 cut(s) 121, 768, 858, 1081
BspFNI CGCG 1 cut(s) 819
BspLI GGNNCC 3 cut(s) 6, 713, 714
BspMAI CTGCAG 1 cut(s) 22
BspPI GGATC 1 cut(s) 1163
BspT104I TTCGAA 1 cut(s) 704
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 2 cut(s) 337, 1035
BsrI ACTGG 3 cut(s) 518, 549, 1046
BssECI CCNNGG 5 cut(s) 319, 736, 860, 1003, 1017
BssMI GATC 3 cut(s) 160, 591, 1155
BssSI CACGAG 1 cut(s) 1197
BssT1I CCWWGG 3 cut(s) 736, 860, 1003
Bst2BI CACGAG 1 cut(s) 1197
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 505, 599, 1170
BstAPI GCANNNNNTGC 1 cut(s) 949
BstBI TTCGAA 1 cut(s) 704
BstC8I GCNNGC 3 cut(s) 309, 398, 941
BstDEI CTNAG 5 cut(s) 129, 326, 755, 866, 1089
BstDSI CCRYGG 3 cut(s) 860, 1003, 1017
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 4 cut(s) 750, 853, 1003, 1013
BstFNI CGCG 1 cut(s) 819
BstHHI GCGC 2 cut(s) 440, 821
BstKTI GATC 3 cut(s) 163, 594, 1158
BstMAI GTCTC 3 cut(s) 337, 862, 1035
BstMBI GATC 3 cut(s) 160, 591, 1155
BstMCI CGRYCG 2 cut(s) 504, 1169
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 2 cut(s) 825, 932
BstPAI GACNNNNGTC 1 cut(s) 1138
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 2 cut(s) 674, 984
BstUI CGCG 1 cut(s) 819
BstV1I GCAGC 3 cut(s) 4, 47, 1000
BstV2I GAAGAC 2 cut(s) 148, 1164
BsuRI GGCC 2 cut(s) 428, 449
BtgI CCRYGG 3 cut(s) 860, 1003, 1017
BtrI CACGTC 1 cut(s) 1096
BtsCI GGATG 4 cut(s) 750, 853, 1003, 1013
BtsIMutI CAGTG 5 cut(s) 156, 300, 467, 556, 1053
Cac8I GCNNGC 3 cut(s) 309, 398, 941
CfoI GCGC 2 cut(s) 440, 821
Cfr13I GGNCC 1 cut(s) 712
Csp6I GTAC 3 cut(s) 70, 363, 919
CviAII CATG 9 cut(s) 340, 424, 679, 822, 852, 861, 929, 1004, 1083
CviQI GTAC 3 cut(s) 70, 363, 919
DdeI CTNAG 5 cut(s) 129, 326, 755, 866, 1089
DpnI GATC 3 cut(s) 162, 593, 1157
DpnII GATC 3 cut(s) 160, 591, 1155
DraIII CACNNNGTG 1 cut(s) 988
DriI GACNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 426
Eam1105I GACNNNNNGTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 1040
Eco130I CCWWGG 3 cut(s) 736, 860, 1003
Eco147I AGGCCT 1 cut(s) 449
Eco31I GGTCTC 2 cut(s) 337, 1035
Eco47I GGWCC 1 cut(s) 712
Eco91I GGTNACC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 3 cut(s) 736, 860, 1003
EcoT22I ATGCAT 1 cut(s) 853
ErhI CCWWGG 3 cut(s) 736, 860, 1003
FaeI CATG 9 cut(s) 343, 427, 682, 825, 855, 864, 932, 1007, 1086
FaqI GGGAC 2 cut(s) 336, 725
FatI CATG 9 cut(s) 339, 423, 678, 821, 851, 860, 928, 1003, 1082
FauI CCCGC 2 cut(s) 580, 824
Fnu4HI GCNGC 3 cut(s) 18, 36, 1014
FokI GGATG 4 cut(s) 737, 860, 1010, 1020
Fsp4HI GCNGC 3 cut(s) 18, 36, 1014
FspBI CTAG 4 cut(s) 371, 581, 654, 842
GlaI GCGC 2 cut(s) 439, 820
GluI GCNGC 3 cut(s) 18, 36, 1014
HaeIII GGCC 2 cut(s) 428, 449
HhaI GCGC 2 cut(s) 440, 821
Hin1II CATG 9 cut(s) 343, 427, 682, 825, 855, 864, 932, 1007, 1086
Hin6I GCGC 2 cut(s) 438, 819
HinP1I GCGC 2 cut(s) 438, 819
HincII GTYRAC 2 cut(s) 813, 1192
HindII GTYRAC 2 cut(s) 813, 1192
HinfI GANTC 2 cut(s) 26, 587
HphI GGTGA 5 cut(s) 21, 64, 73, 182, 1167
Hpy166II GTNNAC 5 cut(s) 465, 523, 813, 982, 1192
Hpy188I TCNGA 2 cut(s) 619, 1150
Hpy188III TCNNGA 3 cut(s) 1108, 1164, 1199
Hpy8I GTNNAC 5 cut(s) 465, 523, 813, 982, 1192
Hpy99I CGWCG 1 cut(s) 1144
HpyAV CCTTC 5 cut(s) 4, 156, 555, 885, 955
HpyCH4III ACNGT 3 cut(s) 505, 599, 1170
HpyCH4IV ACGT 2 cut(s) 888, 1095
HpyCH4V TGCA 7 cut(s) 20, 221, 343, 396, 851, 972, 982
HpyF3I CTNAG 5 cut(s) 129, 326, 755, 866, 1089
HpySE526I ACGT 2 cut(s) 888, 1095
Hsp92II CATG 9 cut(s) 343, 427, 682, 825, 855, 864, 932, 1007, 1086
HspAI GCGC 2 cut(s) 438, 819
KflI GGGWCCC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 160, 591, 1155
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 3 cut(s) 4, 47, 1000
LweI GCATC 1 cut(s) 838
MaeI CTAG 4 cut(s) 371, 581, 654, 842
MaeII ACGT 2 cut(s) 888, 1095
MaeIII GTNAC 5 cut(s) 154, 170, 277, 656, 1199
MalI GATC 3 cut(s) 162, 593, 1157
MboI GATC 3 cut(s) 160, 591, 1155
MboII GAAGA 6 cut(s) 89, 153, 398, 616, 644, 1164
MhlI GDGCHC 2 cut(s) 674, 984
MlsI TGGCCA 1 cut(s) 428
MluCI AATT 8 cut(s) 243, 289, 457, 603, 620, 664, 1059, 1076
MluNI TGGCCA 1 cut(s) 428
MlyI GAGTC 1 cut(s) 596
Mox20I TGGCCA 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 853
MroXI GAANNNNTTC 2 cut(s) 145, 1078
MscI TGGCCA 1 cut(s) 428
MseI TTAA 3 cut(s) 662, 894, 1207
MslI CAYNNNNRTG 3 cut(s) 472, 677, 1008
Msp20I TGGCCA 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 819
NcoI CCATGG 2 cut(s) 860, 1003
NdeII GATC 3 cut(s) 160, 591, 1155
NlaIII CATG 9 cut(s) 343, 427, 682, 825, 855, 864, 932, 1007, 1086
NlaIV GGNNCC 3 cut(s) 6, 713, 714
NmeAIII GCCGAG 1 cut(s) 610
NmuCI GTSAC 4 cut(s) 154, 170, 656, 1199
NsiI ATGCAT 1 cut(s) 853
NspI RCATGY 2 cut(s) 825, 932
NspV TTCGAA 1 cut(s) 704
PceI AGGCCT 1 cut(s) 449
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 2 cut(s) 145, 1078
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 3 cut(s) 19, 37, 1015
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 712
PshAI GACNNNNGTC 1 cut(s) 1138
Psp1406I AACGTT 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 318
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 3 cut(s) 6, 713, 714
PspPI GGNCC 1 cut(s) 712
PspPPI RGGWCCY 1 cut(s) 712
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 3 cut(s) 71, 364, 920
RsaNI GTAC 3 cut(s) 70, 363, 919
RseI CAYNNNNRTG 3 cut(s) 472, 677, 1008
SaqAI TTAA 3 cut(s) 662, 894, 1207
SatI GCNGC 3 cut(s) 18, 36, 1014
Sau3AI GATC 3 cut(s) 160, 591, 1155
Sau96I GGNCC 1 cut(s) 712
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 2 cut(s) 674, 984
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 704
SinI GGWCC 1 cut(s) 712
SmiMI CAYNNNNRTG 3 cut(s) 472, 677, 1008
SpeI ACTAGT 1 cut(s) 370
Sse9I AATT 8 cut(s) 243, 289, 457, 603, 620, 664, 1059, 1076
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 7 cut(s) 95, 115, 573, 817, 932, 952, 1025
SspMI CTAG 4 cut(s) 371, 581, 654, 842
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 3 cut(s) 736, 860, 1003
TaaI ACNGT 3 cut(s) 505, 599, 1170
TaiI ACGT 2 cut(s) 891, 1098
TaqI TCGA 5 cut(s) 565, 590, 704, 806, 1165
TasI AATT 8 cut(s) 243, 289, 457, 603, 620, 664, 1059, 1076
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 3 cut(s) 662, 894, 1207
Tru9I TTAA 3 cut(s) 662, 894, 1207
TscAI CASTG 5 cut(s) 163, 300, 474, 556, 1053
TseFI GTSAC 4 cut(s) 154, 170, 656, 1199
TseI GCWGC 3 cut(s) 17, 35, 1013
Tsp45I GTSAC 4 cut(s) 154, 170, 656, 1199
TspDTI ATGAA 6 cut(s) 90, 667, 809, 867, 974, 1071
TspGWI ACGGA 2 cut(s) 243, 936
TspRI CASTG 5 cut(s) 163, 300, 474, 556, 1053
VneI GTGCAC 1 cut(s) 980
VpaK11BI GGWCC 1 cut(s) 712
XapI RAATTY 5 cut(s) 289, 603, 620, 664, 1076
XceI RCATGY 2 cut(s) 825, 932
XmnI GAANNNNTTC 2 cut(s) 145, 1078
XspI CTAG 4 cut(s) 371, 581, 654, 842
Zsp2I ATGCAT 1 cut(s) 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.