Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017669

Physical Location & Seq

Genomic Coordinates Forward (+)

22703496 .. 22704058

Gene Structure 563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACGAATTGGCAAGGGTCTCCTAATAACTACAAGCGATACGGCGTCGGGACATATGAAACAGAGATCGAGGCAGCTATAGCATATGATAGAGCTGCACTCAAGATGCCGGGAGCTCATTCCCTCAACTTCCACCAGAGTAATTACACTATAGAAGAGATCGCATTCCAAAGTCAGCACTCAATTGAGGAAATTCTGAGTATGTTGCATGATAAAACGTACTCATTCATGCTTAGGAATTTTAATTTGCAGCACTCATCAAGTATTGGGTATCATGCAGAAACCTTCATGAAGGAACAAGGAAATTTGTATGAATGTGTTTTTCAGAAGGAACTGAGCCATATGGATGTTATCTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

121

Amino Acids

14.04

Weight (kDa)

5.55

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g19881 FvH4_6g29430
prunus_persica	Prupe.5G061400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0204681
rosa_laevigata	RLG00000003438
rosa_multiflora	Rmu_sc0007104.1_g000008
rosa_rugosa	Rorug07G0085600
rosa_samantha	Rh7AG215500 Rh7BG212700 Rh7CG228600 Rh7DG223200
rosa_wichuraiana	Rw7G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	192, 238, 304
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	221
AluBI	AGCT	3 cut(s)	77, 95, 116
AluI	AGCT	3 cut(s)	77, 95, 116
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	74, 95, 250
ApoI	RAATTY	3 cut(s)	192, 238, 304
AsuC2I	CCSGG	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	82, 86, 262
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	2 cut(s)	78, 150
BisI	GCNGC	3 cut(s)	75, 96, 251
BlsI	GCNGC	3 cut(s)	76, 97, 252
Bme1390I	CCNGG	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	96
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	24
BseGI	GGATG	1 cut(s)	352
BseMII	CTCAG	2 cut(s)	188, 326
BseXI	GCAGC	3 cut(s)	82, 86, 262
BsgI	GTGCAG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	66, 159
BspCNI	CTCAG	2 cut(s)	189, 327
BspHI	TCATGA	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	24
BssMI	GATC	2 cut(s)	66, 159
BssNI	GRCGYC	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	197, 233, 335
BstF5I	GGATG	1 cut(s)	352
BstKTI	GATC	2 cut(s)	69, 162
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	66, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	2 cut(s)	78, 150
BstV1I	GCAGC	3 cut(s)	82, 86, 262
BtsCI	GGATG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	288
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	209, 229, 275, 289
CviJI	RGCY	4 cut(s)	77, 95, 116, 339
CviKI_1	RGCY	4 cut(s)	77, 95, 116, 339
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	197, 233, 335
DpnI	GATC	2 cut(s)	68, 161
DpnII	GATC	2 cut(s)	66, 159
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	118
FaeI	CATG	4 cut(s)	212, 232, 278, 292
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	4 cut(s)	208, 228, 274, 288
FauNDI	CATATG	3 cut(s)	55, 85, 342
Fnu4HI	GCNGC	3 cut(s)	75, 96, 251
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	3 cut(s)	75, 96, 251
GluI	GCNGC	3 cut(s)	75, 96, 251
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	4 cut(s)	212, 232, 278, 292
HpaII	CCGG	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	198, 327
Hpy188III	TCNNGA	3 cut(s)	49, 103, 289
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	286, 295, 322
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	98, 208, 250, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	3 cut(s)	197, 233, 335
HpySE526I	ACGT	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	212, 232, 278, 292
Kzo9I	GATC	2 cut(s)	66, 159
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	2 cut(s)	123, 149
Lsp1109I	GCAGC	3 cut(s)	82, 86, 262
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	218
MalI	GATC	2 cut(s)	68, 161
MboI	GATC	2 cut(s)	66, 159
MboII	GAAGA	1 cut(s)	167
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	7 cut(s)	7, 142, 183, 192, 238, 244, 304
MnlI	CCTC	3 cut(s)	64, 134, 181
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	111
NdeI	CATATG	3 cut(s)	55, 85, 342
NdeII	GATC	2 cut(s)	66, 159
NlaIII	CATG	4 cut(s)	212, 232, 278, 292
PagI	TCATGA	1 cut(s)	288
PctI	GAATGC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	76, 97, 252
Psp124BI	GAGCTC	1 cut(s)	118
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	75, 96, 251
Sau3AI	GATC	2 cut(s)	66, 159
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	5 cut(s)	79, 97, 118, 221, 287
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	78, 150
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	7 cut(s)	7, 142, 183, 192, 238, 244, 304
SstI	GAGCTC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	69
TasI	AATT	7 cut(s)	7, 142, 183, 192, 238, 244, 304
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseI	GCWGC	3 cut(s)	74, 95, 250
TspDTI	ATGAA	5 cut(s)	72, 217, 277, 305, 327
XapI	RAATTY	3 cut(s)	192, 238, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.