Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017337

Physical Location & Seq

Genomic Coordinates Forward (+)

22893072 .. 22894436

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGTAATCTCATCCTCGATTTCTCAAATATCTTAAGCCTATATATGTTCGGTTTTCTTTTCTGCACTAGGTCATCCTCTCAACAGATTTTGATGGGAAAATCAAGGCATGGGTGTATTATGAGAGGGATCCATGATGCTCCAGGTCGTTCATGCCTACGAGTGGCCTATAGTACTGATGGAAAGAGGCTATTCTCATGTGGGACAAACATGAAAGGGGAGTCATACCTTTTGGAATGGAACGACAATGAGGGGGAAGTTAAGCGAGTTTATAATGGGCTCGGGAAGCGGGCAGTCGGGATAGTACAATTTGATACAACCAAAAACCGATTTTTGGTTGCTGGTGATGATTCCAGTATAAAGTTTTGGGAGATGGACAATGAGGACCTGCTGTACGCCAGTGACGCCGGTGGTGGATTACCGGCGTCTCCTTGTGTACGATTTAACAAGGACGGAACCTTGTTAGCTGTTTCAACAAATCAAAATGGTATTAAAGTACTTGCAAATATACCAACAGCATTGAAAGTTTGCGTCTCACTGGCAATTGATCCCTATAGGATCGCTTCTGGAACCCCTGTGAAGGGATCGATACTTCACACATTTGGTTCTTCCCCAGTTCACAATGGAGGGCCTACCACTAGCCAGCAGCCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

219

Amino Acids

23.65

Weight (kDa)

8.74

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	54 - 167	4.8e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29651
malus_domestica	MD00G1020200.v1.1 MD00G1021800.v1.1
pyrus_communis	pycom03g18610 pycom11g01420 pycom13g13820 pycom16g13720 pycom17g21150 pycom17g21220 pycom17g21300 pycom17g21370
rosa_chinensis	RchiOBHm_Chr5g0002691 RchiOBHm_Chr6g0261151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	396
AciI	CCGC	1 cut(s)	289
AclWI	GGATC	5 cut(s)	124, 137, 542, 566, 592
AcyI	GRCGYC	2 cut(s)	405, 425
AfaI	GTAC	5 cut(s)	175, 306, 395, 438, 498
AfiI	CCNNNNNNNGG	4 cut(s)	163, 334, 580, 581
AflII	CTTAAG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	474, 523
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	467
AluI	AGCT	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	432, 538
AlwI	GGATC	5 cut(s)	124, 137, 542, 566, 592
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	165, 629
ApeKI	GCWGC	1 cut(s)	646
AspS9I	GGNCC	2 cut(s)	385, 629
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	385
BamHI	GGATCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	282
BccI	CCATC	3 cut(s)	88, 173, 367
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	432, 538
BfaI	CTAG	2 cut(s)	69, 639
BfmI	CTRYAG	2 cut(s)	169, 553
BfrI	CTTAAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	1 cut(s)	647
BlsI	GCNGC	1 cut(s)	648
BmcAI	AGTACT	2 cut(s)	175, 498
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	385, 629
BmiI	GGNNCC	3 cut(s)	131, 457, 571
BmrFI	CCNGG	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	587
BsaHI	GRCGYC	2 cut(s)	405, 425
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 334, 580, 581
Bse118I	RCCGGY	2 cut(s)	407, 421
Bse1I	ACTGG	4 cut(s)	354, 399, 543, 614
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	587
BseGI	GGATG	2 cut(s)	12, 74
BseLI	CCNNNNNNNGG	4 cut(s)	163, 334, 580, 581
BseNI	ACTGG	4 cut(s)	354, 399, 543, 614
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	167, 631
BshVI	ATCGAT	1 cut(s)	587
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	408, 422
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	4 cut(s)	163, 334, 580, 581
BsmAI	GTCTC	2 cut(s)	432, 538
BsmBI	CGTCTC	2 cut(s)	432, 538
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	167, 631
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	129, 547, 558, 584
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	167, 631
BspDI	ATCGAT	1 cut(s)	587
BspLI	GGNNCC	3 cut(s)	131, 457, 571
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	5 cut(s)	124, 137, 542, 566, 592
BspTI	CTTAAG	1 cut(s)	34
BsrFI	RCCGGY	2 cut(s)	407, 421
BsrI	ACTGG	4 cut(s)	354, 399, 543, 614
BssAI	RCCGGY	2 cut(s)	407, 421
BssMI	GATC	4 cut(s)	129, 547, 558, 584
BssNI	GRCGYC	2 cut(s)	405, 425
Bst2UI	CCWGG	1 cut(s)	144
BstACI	GRCGYC	2 cut(s)	405, 425
BstAFI	CTTAAG	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	291, 644
BstF5I	GGATG	2 cut(s)	12, 74
BstKTI	GATC	4 cut(s)	132, 550, 561, 587
BstMAI	GTCTC	2 cut(s)	432, 538
BstMBI	GATC	4 cut(s)	129, 547, 558, 584
BstMWI	GCNNNNNNNGC	2 cut(s)	286, 404
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	169, 553
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	167, 631
BsuTUI	ATCGAT	1 cut(s)	587
BtsCI	GGATG	2 cut(s)	12, 74
BtsIMutI	CAGTG	2 cut(s)	406, 536
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	291, 644
Cfr10I	RCCGGY	2 cut(s)	407, 421
Cfr13I	GGNCC	2 cut(s)	385, 629
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	3 cut(s)	413, 414, 520
Csp6I	GTAC	5 cut(s)	174, 305, 394, 437, 497
CviAII	CATG	5 cut(s)	110, 134, 153, 198, 211
CviJI	RGCY	8 cut(s)	39, 167, 190, 280, 467, 631, 642, 649
CviKI_1	RGCY	8 cut(s)	39, 167, 190, 280, 467, 631, 642, 649
CviQI	GTAC	5 cut(s)	174, 305, 394, 437, 497
DpnI	GATC	4 cut(s)	131, 549, 560, 586
DpnII	GATC	4 cut(s)	129, 547, 558, 584
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	385
Eco88I	CYCGRG	1 cut(s)	281
EcoO109I	RGGNCCY	2 cut(s)	385, 629
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	282
Esp3I	CGTCTC	2 cut(s)	432, 538
FaeI	CATG	5 cut(s)	113, 137, 156, 201, 214
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	5 cut(s)	109, 133, 152, 197, 210
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	647
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	647
FspBI	CTAG	2 cut(s)	69, 639
GluI	GCNGC	1 cut(s)	647
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	167, 631
HapII	CCGG	2 cut(s)	408, 422
HgaI	GACGC	3 cut(s)	413, 414, 520
Hin1I	GRCGYC	2 cut(s)	405, 425
Hin1II	CATG	5 cut(s)	113, 137, 156, 201, 214
HinfI	GANTC	2 cut(s)	221, 350
HpaII	CCGG	2 cut(s)	408, 422
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	437, 619
Hpy188III	TCNNGA	3 cut(s)	283, 298, 567
Hpy8I	GTNNAC	2 cut(s)	437, 619
HpyAV	CCTTC	1 cut(s)	574
HpyCH4V	TGCA	2 cut(s)	66, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	286, 404
Hsp92I	GRCGYC	2 cut(s)	405, 425
Hsp92II	CATG	5 cut(s)	113, 137, 156, 201, 214
Kzo9I	GATC	4 cut(s)	129, 547, 558, 584
LmnI	GCTCC	1 cut(s)	145
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	69, 639
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	4 cut(s)	131, 549, 560, 586
MboI	GATC	4 cut(s)	129, 547, 558, 584
MboII	GAAGA	1 cut(s)	600
MfeI	CAATTG	1 cut(s)	543
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	2 cut(s)	308, 543
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	7 cut(s)	26, 88, 119, 180, 244, 376, 620
MseI	TTAA	4 cut(s)	35, 261, 444, 492
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	2 cut(s)	408, 422
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	286, 404
NdeII	GATC	4 cut(s)	129, 547, 558, 584
NlaIII	CATG	5 cut(s)	113, 137, 156, 201, 214
NlaIV	GGNNCC	3 cut(s)	131, 457, 571
NmuCI	GTSAC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	648
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	131, 457, 571
PspPI	GGNCC	2 cut(s)	385, 629
PspPPI	RGGWCCY	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	5 cut(s)	175, 306, 395, 438, 498
RsaNI	GTAC	5 cut(s)	174, 305, 394, 437, 497
SaqAI	TTAA	4 cut(s)	35, 261, 444, 492
SatI	GCNGC	1 cut(s)	647
Sau3AI	GATC	4 cut(s)	129, 547, 558, 584
Sau96I	GGNCC	2 cut(s)	385, 629
ScaI	AGTACT	2 cut(s)	175, 498
SchI	GAGTC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	6 cut(s)	74, 148, 231, 390, 461, 469
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	2 cut(s)	169, 553
SgrAI	CRCCGGYG	1 cut(s)	407
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	308, 543
SsiI	CCGC	1 cut(s)	289
SspMI	CTAG	2 cut(s)	69, 639
StyD4I	CCNGG	1 cut(s)	142
TaqI	TCGA	2 cut(s)	18, 587
TasI	AATT	2 cut(s)	308, 543
TatI	WGTACW	3 cut(s)	173, 304, 496
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	4 cut(s)	35, 261, 444, 492
Tru9I	TTAA	4 cut(s)	35, 261, 444, 492
TscAI	CASTG	2 cut(s)	406, 543
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	646
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	2 cut(s)	141, 227
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	2 cut(s)	406, 543
Vha464I	CTTAAG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	385
XspI	CTAG	2 cut(s)	69, 639
ZrmI	AGTACT	2 cut(s)	175, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.