RchiOBHm_Chr6g0261151

Topless-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
16111305 .. 16124676
13372 bp
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UTR
Exon/CDS
Intron
PRQ23420

Sequence Viewer

Length: 147 bp
ATGTTGCTATTCTCACGTGGGACAGATAAAGAAGGGGATCCATACTTGGTGGAATGGAATGAAAGTGAAGGAGCAGTAAAGCGTACCTATCATGGTCTTGGGAAGCGGACTGTTGGGGTTGTGCAGTTTGATACCACCAAGAATTGA

Protein Analysis

48

Amino Acids

5.43

Weight (kDa)

6.54

Isoelectric Point (pI)

21.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AclWI GGATC 2 cut(s) 32, 45
AcvI CACGTG 1 cut(s) 17
AfaI GTAC 1 cut(s) 85
AlwI GGATC 2 cut(s) 32, 45
BamHI GGATCC 1 cut(s) 37
BbrPI CACGTG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 2 cut(s) 32, 45
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 17
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Csp6I GTAC 1 cut(s) 84
CviAII CATG 1 cut(s) 92
CviQI GTAC 1 cut(s) 84
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco72I CACGTG 1 cut(s) 17
FaeI CATG 1 cut(s) 95
FaiI YATR 2 cut(s) 43, 93
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 91
Hin1II CATG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 26, 62
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 1 cut(s) 124
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 71
MaeII ACGT 1 cut(s) 16
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MflI RGATCY 1 cut(s) 37
MluCI AATT 1 cut(s) 142
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 1 cut(s) 39
PmaCI CACGTG 1 cut(s) 17
PmlI CACGTG 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 17
PspCI CACGTG 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 37
SetI ASST 2 cut(s) 19, 89
SgeI CNNG 5 cut(s) 27, 29, 58, 104, 110
Sse9I AATT 1 cut(s) 142
SsiI CCGC 1 cut(s) 106
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 19
TasI AATT 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.