Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0017337

Physical Location & Seq

Genomic Coordinates Forward (+)

3704501 .. 3706040

Gene Structure 1540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1020200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCACCTGATGACTTGCCTAAGAATGTCACTCAGGACTTTGAATCAGGGTTCATCTCCGATGAGCATGGATTTTCATCCTTCACAGCGGACTTTTCTTCTTGTTGGTACCAATGTGGGGGACGTAGGCCTGTGGGAAGTTGGATCTAGGGAGCGACTAGTTTTAAGGAACTTCAAAGTATGGGATCTTAGTTCATGCTCAATGCTCCTGCAGGCTGCTCTAGTTAAGGATGCTGGTGTGTCTGTTAACCGTGTGATTTGGAGCTCTGATGGTGCTTTATTTGGTTGTTGGGAACAATTGAGAATCATCTTTCTTACGATGGGTCTGATGGACGATAATTACTCTGATCGATTGCTTCCTGATTGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

124

Amino Acids

13.89

Weight (kDa)

6.04

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29651
malus_domestica	MD00G1020200.v1.1 MD00G1021800.v1.1
pyrus_communis	pycom03g18610 pycom11g01420 pycom13g13820 pycom16g13720 pycom17g21150 pycom17g21220 pycom17g21300 pycom17g21370
rosa_chinensis	RchiOBHm_Chr5g0002691 RchiOBHm_Chr6g0261151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	107
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	2 cut(s)	151, 192
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	43, 175
AhlI	ACTAGT	1 cut(s)	157
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	266
AlwI	GGATC	2 cut(s)	151, 192
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	215
Asp718I	GGTACC	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	263, 313, 322
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	3 cut(s)	147, 158, 221
BfmI	CTRYAG	1 cut(s)	209
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	109
BmsI	GCATC	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse8I	GATNNNNATC	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	349
BseGI	GGATG	2 cut(s)	76, 235
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	143, 184, 346
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	2 cut(s)	151, 192
BspT107I	GGYRCC	1 cut(s)	107
BssMI	GATC	3 cut(s)	143, 184, 346
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	20, 32, 188
BstF5I	GGATG	2 cut(s)	76, 235
BstKTI	GATC	3 cut(s)	146, 187, 349
BstMBI	GATC	3 cut(s)	143, 184, 346
BstSFI	CTRYAG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	143, 184
BstYI	RGATCY	2 cut(s)	143, 184
Bsu15I	ATCGAT	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	76, 235
Cac8I	GCNNGC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	67, 195
CviJI	RGCY	3 cut(s)	129, 215, 264
CviKI_1	RGCY	3 cut(s)	129, 215, 264
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	3 cut(s)	20, 32, 188
DpnI	GATC	3 cut(s)	145, 186, 348
DpnII	GATC	3 cut(s)	143, 184, 346
Ecl136II	GAGCTC	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	266
Eco53kI	GAGCTC	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	2 cut(s)	70, 198
FaiI	YATR	3 cut(s)	68, 181, 196
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	66, 194
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	2 cut(s)	63, 242
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	3 cut(s)	147, 158, 221
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	70, 198
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	43, 303
HpaI	GTTAAC	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	60, 268, 327, 346
Hpy188III	TCNNGA	2 cut(s)	34, 359
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	4, 211
HpyF3I	CTNAG	3 cut(s)	20, 32, 188
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	70, 198
KpnI	GGTACC	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	143, 184, 346
LmnI	GCTCC	3 cut(s)	151, 210, 261
LpnPI	CCDG	7 cut(s)	19, 20, 32, 143, 197, 219, 221
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	3 cut(s)	147, 158, 221
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	3 cut(s)	145, 186, 348
MboI	GATC	3 cut(s)	143, 184, 346
MboII	GAAGA	1 cut(s)	89
MfeI	CAATTG	1 cut(s)	296
MflI	RGATCY	2 cut(s)	143, 184
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	2 cut(s)	296, 337
MmeI	TCCRAC	1 cut(s)	121
MseI	TTAA	3 cut(s)	164, 225, 246
MspA1I	CMGCKG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	296
NdeII	GATC	3 cut(s)	143, 184, 346
NlaIII	CATG	2 cut(s)	70, 198
NlaIV	GGNNCC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	43, 303
PkrI	GCNGC	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	266
PspN4I	GGNNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	143, 184
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SacI	GAGCTC	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	164, 225, 246
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	143, 184, 346
SbfI	CCTGCAGG	1 cut(s)	213
SdaI	CCTGCAGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	3 cut(s)	9, 126, 266
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	157
Sse8387I	CCTGCAGG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	296, 337
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	3 cut(s)	147, 158, 221
SstI	GAGCTC	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	296, 337
TfiI	GAWTC	2 cut(s)	43, 303
Tru1I	TTAA	3 cut(s)	164, 225, 246
Tru9I	TTAA	3 cut(s)	164, 225, 246
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	3 cut(s)	42, 65, 183
XspI	CTAG	3 cut(s)	147, 158, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.