pycom17g21300

Topless-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
19710569 .. 19711076
508 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21300.3

Sequence Viewer

Length: 324 bp
ATGGCTTACAGTGCTGATGGTACAAGGCTATTTTCATGTGGGACAAGTAAAGACGGTGAGTCATATATTGTTGAATGGAATGAAAGTGAAGGGGCTGTGAAGAGGACCTATCAAGGCTTTCGCAAGCGTTCTTTTGGTGTTGTGCAATTCAATACTACTAAAGACCGGTTTTTGGCTGCTGGTGATGATTTTTCTATTAAATTTTGGGACATGGACAATATTCAACTTCTGACAACTGCTGATGCTGATGGAGGCCTCCCAGTAGGCAAGCCCTCGTATCCGCCTCAACAAGGATGGCACTCTCTTGGCTGCTTCTGCCAATGA

Protein Analysis

108

Amino Acids

11.91

Weight (kDa)

5.22

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 172, 290
AgeI ACCGGT 1 cut(s) 165
AgsI TTSAA 3 cut(s) 74, 151, 224
AhdI GACNNNNNGTC 1 cut(s) 58
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 2 cut(s) 176, 309
ApoI RAATTY 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 68, 194
AvaII GGWCC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 163, 296
BccI CCATC 3 cut(s) 11, 242, 288
BciVI GTATCC 1 cut(s) 288
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 2 cut(s) 177, 310
BlsI GCNGC 2 cut(s) 178, 311
Bme18I GGWCC 1 cut(s) 105
BmeRI GACNNNNNGTC 1 cut(s) 58
BmgT120I GGNCC 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 254
BsaWI WCCGGW 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 290
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 172, 290
BseNI ACTGG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 163, 296
BshFI GGCC 1 cut(s) 255
BshTI ACCGGT 1 cut(s) 165
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 2 cut(s) 55, 221
BslI CCNNNNNNNGG 2 cut(s) 172, 290
BsmFI GGGAC 2 cut(s) 55, 221
BsnI GGCC 1 cut(s) 255
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 11, 56
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 125, 269
BstENI CCTNNNNNAGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 11, 315
BstV1I GCAGC 2 cut(s) 163, 296
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 125, 269
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 21
CspAI ACCGGT 1 cut(s) 165
CviAII CATG 2 cut(s) 36, 211
CviJI RGCY 8 cut(s) 5, 28, 95, 117, 176, 255, 271, 309
CviKI_1 RGCY 8 cut(s) 5, 28, 95, 117, 176, 255, 271, 309
CviQI GTAC 1 cut(s) 21
DriI GACNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 105
FaeI CATG 2 cut(s) 39, 214
FaiI YATR 4 cut(s) 37, 64, 66, 212
FaqI GGGAC 2 cut(s) 55, 221
FatI CATG 2 cut(s) 35, 210
Fnu4HI GCNGC 2 cut(s) 177, 310
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 177, 310
GluI GCNGC 2 cut(s) 177, 310
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 166
Hin1II CATG 2 cut(s) 39, 214
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 68, 194
Hpy188I TCNGA 1 cut(s) 231
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 2 cut(s) 11, 56
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 315
Hsp92II CATG 2 cut(s) 39, 214
LpnPI CCDG 3 cut(s) 165, 179, 273
Lsp1109I GCAGC 2 cut(s) 163, 296
LweI GCATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 112
MluCI AATT 2 cut(s) 146, 200
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 5 cut(s) 96, 245, 266, 283, 294
MseI TTAA 1 cut(s) 198
MspI CCGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 11, 315
NlaIII CATG 2 cut(s) 39, 214
PceI AGGCCT 1 cut(s) 255
PinAI ACCGGT 1 cut(s) 165
PkrI GCNGC 2 cut(s) 178, 311
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 105
PspPI GGNCC 1 cut(s) 105
PspPPI RGGWCCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 177, 310
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 68
SetI ASST 1 cut(s) 110
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 105
Sse9I AATT 2 cut(s) 146, 200
SseBI AGGCCT 1 cut(s) 255
SsiI CCGC 1 cut(s) 281
SspI AATATT 1 cut(s) 220
StuI AGGCCT 1 cut(s) 255
TaaI ACNGT 2 cut(s) 11, 56
TasI AATT 2 cut(s) 146, 200
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 16
TseI GCWGC 2 cut(s) 176, 309
TspDTI ATGAA 2 cut(s) 24, 96
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 105
XagI CCTNNNNNAGG 1 cut(s) 288
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.