Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0017337

Physical Location & Seq

Genomic Coordinates Forward (+)

3776601 .. 3778986

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1021800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGGCTGTCTACTGAAGTATTAACATTTTCAGGACACGGTCATGGTCAAGCTTTGAATGCACCTGATGACTTGCCTAAGAATGTCACTTGGATTTTGAATCAGGGTTCATCTCTCATGAGCATGGATTTTCATGCTTCACAGCAGACTTTTCTTCTTGTTGGTACCGATATGGGGGACGTAGGCCTGTGGGAAGTTGGATCTAGGGAGCGACTCGTTTTAAGGAACTTCAAAGTATTGGATCTTAGTTCATGCTTAATGCTCCTGCAGGCTGCTCTAGTTAAGGATCCTGGTGTGGCTGTTGACCGTGAGATTGGCAGCCCTGATGGTGCTTTATTTGGTGTTGCTTACCCAAGGCACATTGTTCAAATATATTCTTATCATGGGGGTGATGATGTACGAAAGCACCTAGAGATTGATGCACATCTTTGTGTGATTACCTGTGGGGATGACAAGACCATCAAGGTGTGGGATGCTACAACCGGTGCAAAACAATATACTTTTGAAGGTCATGATGCTCCAGTTTATTCTGTCTGCCCACATTATAAGGAAAACATTCGGTTTATCTTGTCAACAGCACTGGATGGAAAGATAAAGGCTTGGATGTCTGACAATTTGGGATCTCGAGTTGATTATGATGCTCCTGGTCGCTGGTGCACAACCATGGCTTATAGTGCTGATGATGGTACAAGGCTATTTTCATGTGGTACAAGTAAGGACGGTGAGTCATATATTGTTGAATGGAATGAAAGTGAAGGGGCTGTGGAGAGGACCTATCAAGGCTTTCGCAAGCGTTCTTTTGGTGTCGTGCAATTCAATACTACTACACACCGGTTTTTGGCTGCTGGTGATGATTTTTCTATTAAATTTTGGGACATGGACAATATTCAACTTCTGACAACTGCTGATGCTGATGGAGGCCTCCCAGCAAGCCCTCGCATCCGCCTCAACAAGGATGGCACTCTCTTAGCTGCTTCTGCCAATGAGAATGGGATTAAAGTTTTGGCAAATCAGATGGAGTGCGGTTGTTGCGAACGATTGAGAATCATCTTTCTTATGATGGGTCTGATAGACGATAATTACTCTGATCGATTGCTTCCTGATTGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003002 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010051 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048519 GO:0048523 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0090421 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04934 map04934

Pfam Domains

Protein Families

WD40

Protein Analysis

371

Amino Acids

40.86

Weight (kDa)

5.05

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	132 - 334	3.7e-06	WDR55
Beta-prop_WDR3_2nd	PF25172	140 - 239	1.1e-06	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	141 - 201	1.8e-07	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	143 - 205	9.3e-07	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	144 - 294	1.6e-13	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	144 - 337	2.6e-14	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	144 - 203	3.5e-09	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017337)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29651
malus_domestica	MD00G1020200.v1.1 MD00G1021800.v1.1
pyrus_communis	pycom03g18610 pycom11g01420 pycom13g13820 pycom16g13720 pycom17g21150 pycom17g21220 pycom17g21300 pycom17g21370
rosa_chinensis	RchiOBHm_Chr5g0002691 RchiOBHm_Chr6g0261151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
Acc65I	GGTACC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	2 cut(s)	943, 1023
AclWI	GGATC	5 cut(s)	208, 249, 281, 294, 628
AcsI	RAATTY	1 cut(s)	866
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	4 cut(s)	166, 399, 688, 709
AfiI	CCNNNNNNNGG	3 cut(s)	174, 838, 952
AgeI	ACCGGT	2 cut(s)	482, 831
AgsI	TTSAA	8 cut(s)	58, 100, 232, 368, 506, 740, 817, 890
AhdI	GACNNNNNGTC	1 cut(s)	724
AjnI	CCWGG	2 cut(s)	289, 643
AluBI	AGCT	2 cut(s)	53, 971
AluI	AGCT	2 cut(s)	53, 971
Alw21I	GWGCWC	1 cut(s)	659
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	5 cut(s)	208, 249, 281, 294, 628
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	2 cut(s)	184, 919
ApaLI	GTGCAC	1 cut(s)	655
ApeKI	GCWGC	4 cut(s)	272, 318, 842, 971
ApoI	RAATTY	1 cut(s)	866
AsiGI	ACCGGT	2 cut(s)	482, 831
Asp700I	GAANNNNTTC	1 cut(s)	555
Asp718I	GGTACC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	771
AsuHPI	GGTGA	3 cut(s)	401, 734, 860
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	771
BaeGI	GKGCMC	1 cut(s)	659
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	4 cut(s)	259, 330, 829, 958
BccI	CCATC	8 cut(s)	320, 467, 578, 677, 908, 950, 1009, 1054
BciT130I	CCWGG	2 cut(s)	291, 645
BfaI	CTAG	3 cut(s)	204, 278, 410
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	4 cut(s)	273, 319, 843, 972
BlsI	GCNGC	4 cut(s)	274, 320, 844, 973
Bme1390I	CCNGG	2 cut(s)	291, 645
Bme18I	GGWCC	1 cut(s)	771
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	771
BmiI	GGNNCC	2 cut(s)	166, 288
BmrFI	CCNGG	2 cut(s)	291, 645
BmsI	GCATC	6 cut(s)	409, 463, 505, 628, 898, 948
BpmI	CTGGAG	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	1090
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	353, 663
BsaWI	WCCGGW	2 cut(s)	482, 831
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 838, 952
Bse118I	RCCGGY	2 cut(s)	482, 831
Bse1I	ACTGG	2 cut(s)	521, 585
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	291, 645
BseCI	ATCGAT	1 cut(s)	1090
BseDI	CCNNGG	2 cut(s)	353, 663
BseGI	GGATG	6 cut(s)	454, 478, 589, 609, 939, 961
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	174, 838, 952
BseNI	ACTGG	2 cut(s)	521, 585
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	4 cut(s)	259, 330, 829, 958
BseYI	CCCAGC	1 cut(s)	925
BshFI	GGCC	2 cut(s)	186, 921
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	2 cut(s)	482, 831
BshVI	ATCGAT	1 cut(s)	1090
BsiHKAI	GWGCWC	1 cut(s)	659
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	2 cut(s)	483, 832
BslFI	GGGAC	2 cut(s)	191, 887
BslI	CCNNNNNNNGG	3 cut(s)	174, 838, 952
BsmFI	GGGAC	2 cut(s)	191, 887
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	186, 921
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	5 cut(s)	200, 241, 286, 620, 1087
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	2 cut(s)	943, 1023
BspANI	GGCC	2 cut(s)	186, 921
BspDI	ATCGAT	1 cut(s)	1090
BspHI	TCATGA	2 cut(s)	117, 511
BspLI	GGNNCC	2 cut(s)	166, 288
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	5 cut(s)	208, 249, 281, 294, 628
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	482, 831
BsrI	ACTGG	2 cut(s)	521, 585
BssAI	RCCGGY	2 cut(s)	482, 831
BssECI	CCNNGG	2 cut(s)	353, 663
BssMI	GATC	5 cut(s)	200, 241, 286, 620, 1087
BssT1I	CCWWGG	2 cut(s)	353, 663
Bst2UI	CCWGG	2 cut(s)	291, 645
Bst4CI	ACNGT	3 cut(s)	41, 308, 722
BstC8I	GCNNGC	3 cut(s)	270, 791, 931
BstDEI	CTNAG	3 cut(s)	78, 245, 967
BstDSI	CCRYGG	1 cut(s)	663
BstENI	CCTNNNNNAGG	1 cut(s)	950
BstF5I	GGATG	6 cut(s)	454, 478, 589, 609, 939, 961
BstKTI	GATC	5 cut(s)	203, 244, 289, 623, 1090
BstMBI	GATC	5 cut(s)	200, 241, 286, 620, 1087
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 674, 977, 1029
BstNI	CCWGG	2 cut(s)	291, 645
BstSCI	CCNGG	2 cut(s)	289, 643
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	659
BstV1I	GCAGC	4 cut(s)	259, 330, 829, 958
BstX2I	RGATCY	4 cut(s)	200, 241, 286, 620
BstYI	RGATCY	4 cut(s)	200, 241, 286, 620
Bsu15I	ATCGAT	1 cut(s)	1090
BsuRI	GGCC	2 cut(s)	186, 921
BsuTUI	ATCGAT	1 cut(s)	1090
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	6 cut(s)	454, 478, 589, 609, 939, 961
BtsIMutI	CAGTG	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	270, 791, 931
CciI	TCATGA	2 cut(s)	117, 511
Cfr10I	RCCGGY	2 cut(s)	482, 831
Cfr13I	GGNCC	1 cut(s)	771
ClaI	ATCGAT	1 cut(s)	1090
Csp6I	GTAC	4 cut(s)	165, 398, 687, 708
CspAI	ACCGGT	2 cut(s)	482, 831
CviQI	GTAC	4 cut(s)	165, 398, 687, 708
DdeI	CTNAG	3 cut(s)	78, 245, 967
DpnI	GATC	5 cut(s)	202, 243, 288, 622, 1089
DpnII	GATC	5 cut(s)	200, 241, 286, 620, 1087
DriI	GACNNNNNGTC	1 cut(s)	724
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EciI	GGCGGA	1 cut(s)	932
Eco130I	CCWWGG	2 cut(s)	353, 663
Eco147I	AGGCCT	2 cut(s)	186, 921
Eco47I	GGWCC	1 cut(s)	771
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	950
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	2 cut(s)	289, 643
EcoT14I	CCWWGG	2 cut(s)	353, 663
ErhI	CCWWGG	2 cut(s)	353, 663
FaqI	GGGAC	2 cut(s)	191, 887
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	4 cut(s)	273, 319, 843, 972
FokI	GGATG	6 cut(s)	461, 485, 596, 616, 926, 968
Fsp4HI	GCNGC	4 cut(s)	273, 319, 843, 972
FspBI	CTAG	3 cut(s)	204, 278, 410
GluI	GCNGC	4 cut(s)	273, 319, 843, 972
GsaI	CCCAGC	1 cut(s)	929
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	186, 921
HapII	CCGG	2 cut(s)	483, 832
HincII	GTYRAC	2 cut(s)	304, 573
HindII	GTYRAC	2 cut(s)	304, 573
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	4 cut(s)	100, 213, 725, 1044
HpaII	CCGG	2 cut(s)	483, 832
HphI	GGTGA	3 cut(s)	401, 734, 860
Hpy166II	GTNNAC	4 cut(s)	12, 304, 573, 657
Hpy188I	TCNGA	5 cut(s)	610, 897, 1014, 1068, 1087
Hpy188III	TCNNGA	5 cut(s)	33, 118, 512, 624, 1100
Hpy8I	GTNNAC	4 cut(s)	12, 304, 573, 657
HpyAV	CCTTC	2 cut(s)	500, 749
HpyCH4III	ACNGT	3 cut(s)	41, 308, 722
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	6 cut(s)	62, 268, 422, 488, 657, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 674, 977, 1029
HpyF3I	CTNAG	3 cut(s)	78, 245, 967
HpySE526I	ACGT	1 cut(s)	180
KpnI	GGTACC	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	200, 241, 286, 620, 1087
LmnI	GCTCC	4 cut(s)	208, 267, 523, 646
Lsp1109I	GCAGC	4 cut(s)	259, 330, 829, 958
LweI	GCATC	6 cut(s)	409, 463, 505, 628, 898, 948
MaeI	CTAG	3 cut(s)	204, 278, 410
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	5 cut(s)	202, 243, 288, 622, 1089
MboI	GATC	5 cut(s)	200, 241, 286, 620, 1087
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	4 cut(s)	200, 241, 286, 620
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	4 cut(s)	613, 812, 866, 1078
MlyI	GAGTC	2 cut(s)	207, 734
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	762, 911, 932, 945, 956
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	6 cut(s)	23, 221, 257, 282, 864, 996
MslI	CAYNNNNRTG	6 cut(s)	42, 122, 387, 429, 464, 662
MspI	CCGG	2 cut(s)	483, 832
MspR9I	CCNGG	2 cut(s)	291, 645
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	291, 645
MwoI	GCNNNNNNNGC	4 cut(s)	59, 674, 977, 1029
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	5 cut(s)	200, 241, 286, 620, 1087
NlaIV	GGNNCC	2 cut(s)	166, 288
NmuCI	GTSAC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	624
PagI	TCATGA	2 cut(s)	117, 511
PceI	AGGCCT	2 cut(s)	186, 921
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	100, 1044
PflFI	GACNNNGTC	1 cut(s)	39
PinAI	ACCGGT	2 cut(s)	482, 831
PkrI	GCNGC	4 cut(s)	274, 320, 844, 973
PleI	GAGTC	2 cut(s)	207, 733
PpsI	GAGTC	2 cut(s)	207, 733
PpuMI	RGGWCCY	1 cut(s)	771
PsiI	TTATAA	1 cut(s)	546
Psp5II	RGGWCCY	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	289, 643
PspFI	CCCAGC	1 cut(s)	925
PspGI	CCWGG	2 cut(s)	289, 643
PspN4I	GGNNCC	2 cut(s)	166, 288
PspPI	GGNCC	1 cut(s)	771
PspPPI	RGGWCCY	1 cut(s)	771
PstI	CTGCAG	1 cut(s)	270
PsuI	RGATCY	4 cut(s)	200, 241, 286, 620
PsyI	GACNNNGTC	1 cut(s)	39
RsaI	GTAC	4 cut(s)	166, 399, 688, 709
RsaNI	GTAC	4 cut(s)	165, 398, 687, 708
RseI	CAYNNNNRTG	6 cut(s)	42, 122, 387, 429, 464, 662
SaqAI	TTAA	6 cut(s)	23, 221, 257, 282, 864, 996
SatI	GCNGC	4 cut(s)	273, 319, 843, 972
Sau3AI	GATC	5 cut(s)	200, 241, 286, 620, 1087
Sau96I	GGNCC	1 cut(s)	771
SbfI	CCTGCAGG	1 cut(s)	270
SchI	GAGTC	2 cut(s)	207, 734
ScrFI	CCNGG	2 cut(s)	291, 645
SdaI	CCTGCAGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	659
SetI	ASST	9 cut(s)	55, 67, 183, 411, 443, 468, 511, 776, 973
SfaNI	GCATC	6 cut(s)	409, 463, 505, 628, 898, 948
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	771
SlaI	CTCGAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	6 cut(s)	42, 122, 387, 429, 464, 662
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
Sse8387I	CCTGCAGG	1 cut(s)	270
Sse9I	AATT	4 cut(s)	613, 812, 866, 1078
SseBI	AGGCCT	2 cut(s)	186, 921
SsiI	CCGC	2 cut(s)	943, 1023
SspI	AATATT	1 cut(s)	886
SspMI	CTAG	3 cut(s)	204, 278, 410
StuI	AGGCCT	2 cut(s)	186, 921
StyD4I	CCNGG	2 cut(s)	289, 643
StyI	CCWWGG	2 cut(s)	353, 663
TaaI	ACNGT	3 cut(s)	41, 308, 722
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	625, 1090
TasI	AATT	4 cut(s)	613, 812, 866, 1078
TfiI	GAWTC	2 cut(s)	100, 1044
Tru1I	TTAA	6 cut(s)	23, 221, 257, 282, 864, 996
Tru9I	TTAA	6 cut(s)	23, 221, 257, 282, 864, 996
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	4 cut(s)	272, 318, 842, 971
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	99, 122, 240, 690, 762
TspRI	CASTG	1 cut(s)	585
Tth111I	GACNNNGTC	1 cut(s)	39
VneI	GTGCAC	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	771
XagI	CCTNNNNNAGG	1 cut(s)	950
XapI	RAATTY	1 cut(s)	866
XhoI	CTCGAG	1 cut(s)	624
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	3 cut(s)	204, 278, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.