Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Forward (+)

27332818 .. 27335026

Gene Structure 2209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTTTTATTCAAGGTGTGACAACATATATAGACGGATAGACGGTCTCTCATTCTCCCTATCTCCCCAGAAAACAAAAACAGCTGCAGAGTTAGAGAGAGAGCAAAAGTACTGGAGTGCACGTTCTGGGAGTTCCTCTGTGACTCTGTCTCTCTGTCCATCATATATAGCTAGACAGATGGGGAGGAGTCCTTGTTGTGCAAAGGAGGGGTTAAATAGAGGAGCATGGACAGCTATGGAGGACAGAACTCTTACAGAGTATATAACAACTCATGGTGAAGGCAAATGGAGAAACCTTCCCAAAAGAGCAGGGCTTAAGAGATGTGGAAAGAGTTGCAGGCTGCGATGGTTGAACTATCTAAGACCTGATATCAAGAGAGGAAACATCACTCGGGATGAAGAAGAGCTCATTATCCGGCTTCATAAGCTCTTGGGAAACAGATGGTCTTTGATAGCGGGTAGGCTTCCTGGCCGAACAGACAATGAAATCAAGAATTACTGGAACACAAACATTGGCAAGAAAGTTCAAGATCACTCATCCACTAATTCTGAAGCCAATATTACTCACCACAAACCACCAAATCATCAAACCCAGAAGAAGAACACAAACGTCGTCCGCACCAAGGCATCAAGGTGCACCAAAGTGTTCATGCCACACCAGCAGTCACAAATAGATAAGAAAGGGACTTGTAATAATCCTACTGCTGATCAACAAGGTGCTGCACCTTTCTTGAACCATGATTATTATGATCCCGTCAACTATAATGATGATCCAGCGCTGAGAATGATGGGGATCACTGACACTCATCACCAAGAATCTGATGATTTTTCCCCATTACTTAACCTGGAGATTGATAATGAAAACAGTAATTCTTGCGGGTTTATGGTAGATTTTAAGATGGATGAGAGCTTCCTTTCGGAGTTTCTCAACGTCGATTTTTCTGAGCTCTACAGCAGCAGTACTAGTACTGCTAATGGAGGAGATGGTGTTAAAGCTGCTATTAGTACCACTTGTGGAGACGACGACCACCATGAGCAGCATGGCCCAGATTTCCGATCATCCATGGCTCCTATCATCGACTCTGAGCTGGACTGGCTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

368

Amino Acids

41.67

Weight (kDa)

7.19

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	73 - 120	2.2e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	76 - 135	2.5e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	126 - 170	2.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	130 - 177	1.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	455, 616, 876
AclWI	GGATC	3 cut(s)	743, 764, 800
AcoI	YGGCCR	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	4 cut(s)	110, 961, 967, 1006
AfeI	AGCGCT	1 cut(s)	777
AfiI	CCNNNNNNNGG	1 cut(s)	622
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	4 cut(s)	12, 352, 527, 733
AhlI	ACTAGT	1 cut(s)	962
AjnI	CCWGG	2 cut(s)	466, 843
AleI	CACNNNNGTG	1 cut(s)	641
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
AluBI	AGCT	9 cut(s)	83, 170, 233, 406, 427, 909, 946, 995, 1087
AluI	AGCT	9 cut(s)	83, 170, 233, 406, 427, 909, 946, 995, 1087
Alw21I	GWGCWC	4 cut(s)	121, 408, 638, 948
Alw26I	GTCTC	3 cut(s)	50, 153, 1011
Alw44I	GTGCAC	2 cut(s)	117, 634
AlwI	GGATC	3 cut(s)	743, 764, 800
Ama87I	CYCGRG	1 cut(s)	390
Aor51HI	AGCGCT	1 cut(s)	777
AoxI	GGCC	2 cut(s)	469, 1042
ApaLI	GTGCAC	2 cut(s)	117, 634
ApeKI	GCWGC	6 cut(s)	83, 340, 719, 954, 995, 1036
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	1 cut(s)	1043
AsuHPI	GGTGA	3 cut(s)	287, 557, 800
AvaI	CYCGRG	1 cut(s)	390
BaeGI	GKGCMC	2 cut(s)	121, 638
BanII	GRGCYC	2 cut(s)	408, 948
Bbv12I	GWGCWC	4 cut(s)	121, 408, 638, 948
BbvI	GCAGC	6 cut(s)	70, 327, 706, 966, 982, 1048
BccI	CCATC	7 cut(s)	166, 172, 339, 435, 781, 892, 977
BciT130I	CCWGG	2 cut(s)	468, 845
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	3 cut(s)	50, 153, 1011
BcuI	ACTAGT	1 cut(s)	962
BfaI	CTAG	2 cut(s)	171, 963
BfmI	CTRYAG	2 cut(s)	84, 949
BfoI	RGCGCY	1 cut(s)	779
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	6 cut(s)	84, 341, 720, 955, 996, 1037
BlsI	GCNGC	6 cut(s)	85, 342, 721, 956, 997, 1038
BmcAI	AGTACT	3 cut(s)	110, 961, 967
Bme1390I	CCNGG	2 cut(s)	468, 845
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	1043
BmiI	GGNNCC	1 cut(s)	1068
BmrFI	CCNGG	2 cut(s)	468, 845
BmsI	GCATC	1 cut(s)	635
BpmI	CTGGAG	2 cut(s)	133, 866
BsaBI	GATNNNNATC	1 cut(s)	791
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	621, 1062
BsaXI	ACNNNNNCTCC	6 cut(s)	106, 136, 178, 208, 972, 1002
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse1I	ACTGG	3 cut(s)	116, 503, 1097
Bse8I	GATNNNNATC	1 cut(s)	791
BseBI	CCWGG	2 cut(s)	468, 845
BseDI	CCNNGG	2 cut(s)	621, 1062
BseGI	GGATG	4 cut(s)	400, 536, 907, 1058
BseJI	GATNNNNATC	1 cut(s)	791
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	3 cut(s)	770, 933, 1074
BseNI	ACTGG	3 cut(s)	116, 503, 1097
BseRI	GAGGAG	3 cut(s)	199, 234, 993
BseSI	GKGCMC	2 cut(s)	121, 638
BseXI	GCAGC	6 cut(s)	70, 327, 706, 966, 982, 1048
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	2 cut(s)	471, 1044
BsiHKAI	GWGCWC	4 cut(s)	121, 408, 638, 948
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	622
BsmAI	GTCTC	3 cut(s)	50, 153, 1011
BsmBI	CGTCTC	1 cut(s)	1011
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	2 cut(s)	471, 1044
Bso31I	GGTCTC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	4 cut(s)	121, 408, 638, 948
Bsp143I	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
Bsp19I	CCATGG	1 cut(s)	1062
BspACI	CCGC	3 cut(s)	455, 616, 876
BspANI	GGCC	2 cut(s)	471, 1044
BspCNI	CTCAG	3 cut(s)	771, 934, 1075
BspHI	TCATGA	1 cut(s)	1100
BspLI	GGNNCC	1 cut(s)	1068
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	3 cut(s)	743, 764, 800
BspQI	GCTCTTC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	314
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	116, 503, 1097
BssECI	CCNNGG	2 cut(s)	621, 1062
BssMI	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
BssT1I	CCWWGG	2 cut(s)	621, 1062
Bst2UI	CCWGG	2 cut(s)	468, 845
Bst4CI	ACNGT	2 cut(s)	44, 866
Bst6I	CTCTTC	1 cut(s)	396
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	4 cut(s)	359, 779, 942, 1083
BstDSI	CCRYGG	1 cut(s)	1062
BstF5I	GGATG	4 cut(s)	400, 536, 907, 1058
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	6 cut(s)	532, 709, 751, 772, 795, 1058
BstMAI	GTCTC	3 cut(s)	50, 153, 1011
BstMBI	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 424, 658, 1093
BstNI	CCWGG	2 cut(s)	468, 845
BstSCI	CCNGG	2 cut(s)	466, 843
BstSFI	CTRYAG	2 cut(s)	84, 949
BstSLI	GKGCMC	2 cut(s)	121, 638
BstV1I	GCAGC	6 cut(s)	70, 327, 706, 966, 982, 1048
BsuRI	GGCC	2 cut(s)	471, 1044
BtgI	CCRYGG	1 cut(s)	1062
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	4 cut(s)	400, 536, 907, 1058
BtsIMutI	CAGTG	1 cut(s)	795
Cac8I	GCNNGC	1 cut(s)	338
CciI	TCATGA	1 cut(s)	1100
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	1043
Csp6I	GTAC	4 cut(s)	109, 960, 966, 1005
CviAII	CATG	8 cut(s)	225, 272, 649, 737, 1031, 1040, 1063, 1101
CviQI	GTAC	4 cut(s)	109, 960, 966, 1005
DdeI	CTNAG	4 cut(s)	359, 779, 942, 1083
DpnI	GATC	6 cut(s)	531, 708, 750, 771, 794, 1057
DpnII	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Ecl136II	GAGCTC	2 cut(s)	406, 946
Eco130I	CCWWGG	2 cut(s)	621, 1062
Eco24I	GRGCYC	2 cut(s)	408, 948
Eco31I	GGTCTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	370
Eco47III	AGCGCT	1 cut(s)	777
Eco53kI	GAGCTC	2 cut(s)	406, 946
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	390
EcoICRI	GAGCTC	2 cut(s)	406, 946
EcoRII	CCWGG	2 cut(s)	466, 843
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	621, 1062
EcoT38I	GRGCYC	2 cut(s)	408, 948
ErhI	CCWWGG	2 cut(s)	621, 1062
Esp3I	CGTCTC	1 cut(s)	1011
FaeI	CATG	8 cut(s)	228, 275, 652, 740, 1034, 1043, 1066, 1104
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	8 cut(s)	224, 271, 648, 736, 1030, 1039, 1062, 1100
FauI	CCCGC	2 cut(s)	448, 869
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	6 cut(s)	84, 341, 720, 955, 996, 1037
FokI	GGATG	4 cut(s)	407, 523, 914, 1045
FriOI	GRGCYC	2 cut(s)	408, 948
Fsp4HI	GCNGC	6 cut(s)	84, 341, 720, 955, 996, 1037
FspBI	CTAG	2 cut(s)	171, 963
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	6 cut(s)	84, 341, 720, 955, 996, 1037
GsuI	CTGGAG	2 cut(s)	133, 866
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	2 cut(s)	471, 1044
HapII	CCGG	1 cut(s)	415
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	8 cut(s)	228, 275, 652, 740, 1034, 1043, 1066, 1104
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	4 cut(s)	142, 187, 815, 1079
HpaII	CCGG	1 cut(s)	415
HphI	GGTGA	3 cut(s)	287, 557, 800
Hpy166II	GTNNAC	3 cut(s)	119, 636, 757
Hpy188I	TCNGA	6 cut(s)	550, 820, 919, 943, 1055, 1084
Hpy188III	TCNNGA	6 cut(s)	373, 392, 490, 527, 730, 1101
Hpy8I	GTNNAC	3 cut(s)	119, 636, 757
Hpy99I	CGWCG	3 cut(s)	614, 935, 1025
HpyAV	CCTTC	2 cut(s)	272, 305
HpyCH4III	ACNGT	2 cut(s)	44, 866
HpyCH4IV	ACGT	3 cut(s)	121, 609, 930
HpyCH4V	TGCA	6 cut(s)	86, 119, 200, 336, 636, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 424, 658, 1093
HpyF3I	CTNAG	4 cut(s)	359, 779, 942, 1083
HpySE526I	ACGT	3 cut(s)	121, 609, 930
Hsp92II	CATG	8 cut(s)	228, 275, 652, 740, 1034, 1043, 1066, 1104
HspAI	GCGC	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	2 cut(s)	221, 1072
Lsp1109I	GCAGC	6 cut(s)	70, 327, 706, 966, 982, 1048
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	2 cut(s)	171, 963
MaeII	ACGT	3 cut(s)	121, 609, 930
MaeIII	GTNAC	3 cut(s)	17, 139, 663
MalI	GATC	6 cut(s)	531, 708, 750, 771, 794, 1057
MboI	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
MboII	GAAGA	4 cut(s)	410, 413, 607, 610
MhlI	GDGCHC	4 cut(s)	121, 408, 638, 948
MluCI	AATT	3 cut(s)	493, 544, 868
MlyI	GAGTC	3 cut(s)	136, 196, 1073
MnlI	CCTC	7 cut(s)	145, 177, 199, 212, 232, 371, 971
MseI	TTAA	5 cut(s)	212, 315, 840, 894, 990
MslI	CAYNNNNRTG	2 cut(s)	631, 641
MspA1I	CMGCKG	1 cut(s)	83
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	415
MspR9I	CCNGG	2 cut(s)	468, 845
MvaI	CCWGG	2 cut(s)	468, 845
MwoI	GCNNNNNNNGC	4 cut(s)	230, 424, 658, 1093
NcoI	CCATGG	1 cut(s)	1062
NdeII	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
NlaIII	CATG	8 cut(s)	228, 275, 652, 740, 1034, 1043, 1066, 1104
NlaIV	GGNNCC	1 cut(s)	1068
NmuCI	GTSAC	3 cut(s)	17, 139, 663
OliI	CACNNNNGTG	1 cut(s)	641
PagI	TCATGA	1 cut(s)	1100
PciSI	GCTCTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	815
PflFI	GACNNNGTC	1 cut(s)	145
PkrI	GCNGC	6 cut(s)	85, 342, 721, 956, 997, 1038
PleI	GAGTC	3 cut(s)	136, 195, 1073
PpsI	GAGTC	3 cut(s)	136, 195, 1073
Psp124BI	GAGCTC	2 cut(s)	408, 948
Psp6I	CCWGG	2 cut(s)	466, 843
PspGI	CCWGG	2 cut(s)	466, 843
PspN4I	GGNNCC	1 cut(s)	1068
PspPI	GGNCC	1 cut(s)	1043
PstI	CTGCAG	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	4 cut(s)	110, 961, 967, 1006
RsaNI	GTAC	4 cut(s)	109, 960, 966, 1005
RseI	CAYNNNNRTG	2 cut(s)	631, 641
SacI	GAGCTC	2 cut(s)	408, 948
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	212, 315, 840, 894, 990
SatI	GCNGC	6 cut(s)	84, 341, 720, 955, 996, 1037
Sau3AI	GATC	6 cut(s)	529, 706, 748, 769, 792, 1055
Sau96I	GGNCC	1 cut(s)	1043
ScaI	AGTACT	3 cut(s)	110, 961, 967
SchI	GAGTC	3 cut(s)	136, 196, 1073
ScrFI	CCNGG	2 cut(s)	468, 845
SduI	GDGCHC	4 cut(s)	121, 408, 638, 948
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	2 cut(s)	84, 949
SmiMI	CAYNNNNRTG	2 cut(s)	631, 641
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SpeI	ACTAGT	1 cut(s)	962
Sse9I	AATT	3 cut(s)	493, 544, 868
SsiI	CCGC	3 cut(s)	455, 616, 876
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	2 cut(s)	171, 963
SstI	GAGCTC	2 cut(s)	408, 948
StyD4I	CCNGG	2 cut(s)	466, 843
StyI	CCWWGG	2 cut(s)	621, 1062
TaaI	ACNGT	2 cut(s)	44, 866
TaiI	ACGT	3 cut(s)	124, 612, 933
TaqI	TCGA	2 cut(s)	933, 1077
TasI	AATT	3 cut(s)	493, 544, 868
TatI	WGTACW	3 cut(s)	108, 959, 965
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	5 cut(s)	212, 315, 840, 894, 990
Tru9I	TTAA	5 cut(s)	212, 315, 840, 894, 990
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	3 cut(s)	17, 139, 663
TseI	GCWGC	6 cut(s)	83, 340, 719, 954, 995, 1036
Tsp45I	GTSAC	3 cut(s)	17, 139, 663
TspDTI	ATGAA	5 cut(s)	410, 411, 498, 637, 873
TspGWI	ACGGA	1 cut(s)	49
TspRI	CASTG	1 cut(s)	802
Tth111I	GACNNNGTC	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	314
VneI	GTGCAC	2 cut(s)	117, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1037
XspI	CTAG	2 cut(s)	171, 963
ZrmI	AGTACT	3 cut(s)	110, 961, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.