Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Forward (+)

65607180 .. 65607596

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG443600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATGAAGAGACTAATCCTACTGTTCAACAAGTTGCTGCACCTTTCCTGAATCATGACTATTATGACCAGGTCAACAATAATGATGATCCACCGCTGAGGATGATGGGGACTGGTACTGATCACCAACCAGCTGATGATTTGCCCCCATTCCTTAATTTGGAGATTGATGATGAAAACAGTAATTCTTGCGGGTTTATGGTAGATTTTAAGATGGACGAGAGCTTTCTTTCGGAGTTTCTCAACGTCGATTTTTCTCAGCTCTACAGTAGTACTAGTACTGCTAATGGAGGAGATCGTGTTAAAGCTGCTATTAGTACCAGTTGTGGAGACGATAATCATCATAAGCTGCATGGCCCAGATTTCCAATCATCCATGGCTCCTATCCTCGACTCTGAATTGGACTGGCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

138

Amino Acids

15.35

Weight (kDa)

4.05

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 192
AclWI	GGATC	1 cut(s)	83
AfaI	GTAC	4 cut(s)	118, 274, 280, 319
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	29
AhlI	ACTAGT	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	5 cut(s)	134, 225, 262, 308, 349
AluI	AGCT	5 cut(s)	134, 225, 262, 308, 349
Alw26I	GTCTC	2 cut(s)	5, 324
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	38, 308, 349
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	25, 295, 336
BccI	CCATC	2 cut(s)	100, 208
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	5, 324
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	3 cut(s)	39, 309, 350
BlsI	GCNGC	3 cut(s)	40, 310, 351
BmcAI	AGTACT	2 cut(s)	274, 280
Bme1390I	CCNGG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	118, 321, 410
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	10, 108, 371
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	89, 272
BseNI	ACTGG	3 cut(s)	118, 321, 410
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	3 cut(s)	25, 295, 336
BsgI	GTGCAG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	5, 324
BsmBI	CGTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	88, 121, 295
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	95, 192
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	90, 271
BspHI	TCATGA	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	118, 321, 410
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	88, 121, 295
BssT1I	CCWWGG	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	25, 182, 269
Bst6I	CTCTTC	1 cut(s)	3
BstDEI	CTNAG	2 cut(s)	98, 258
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	10, 108, 371
BstKTI	GATC	3 cut(s)	91, 124, 298
BstMAI	GTCTC	2 cut(s)	5, 324
BstMBI	GATC	3 cut(s)	88, 121, 295
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	3 cut(s)	25, 295, 336
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	10, 108, 371
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	356
CsiI	ACCWGGT	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	117, 273, 279, 318
CviAII	CATG	3 cut(s)	56, 353, 376
CviJI	RGCY	8 cut(s)	134, 225, 262, 308, 349, 357, 380, 409
CviKI_1	RGCY	8 cut(s)	134, 225, 262, 308, 349, 357, 380, 409
CviQI	GTAC	4 cut(s)	117, 273, 279, 318
DdeI	CTNAG	2 cut(s)	98, 258
DpnI	GATC	3 cut(s)	90, 123, 297
DpnII	GATC	3 cut(s)	88, 121, 295
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	3 cut(s)	59, 356, 379
FaiI	YATR	7 cut(s)	57, 66, 200, 345, 354, 377, 415
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	3 cut(s)	55, 352, 375
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	39, 309, 350
FokI	GGATG	3 cut(s)	17, 115, 358
Fsp4HI	GCNGC	3 cut(s)	39, 309, 350
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	3 cut(s)	39, 309, 350
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	3 cut(s)	59, 356, 379
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	52, 392
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	235, 397
Hpy188III	TCNNGA	2 cut(s)	49, 56
Hpy8I	GTNNAC	1 cut(s)	76
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	3 cut(s)	25, 182, 269
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	41, 352
HpyF3I	CTNAG	2 cut(s)	98, 258
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	59, 356, 379
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	88, 121, 295
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	8 cut(s)	56, 62, 83, 99, 144, 334, 372, 391
Lsp1109I	GCAGC	3 cut(s)	25, 295, 336
MabI	ACCWGGT	1 cut(s)	69
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	1 cut(s)	246
MalI	GATC	3 cut(s)	90, 123, 297
MboI	GATC	3 cut(s)	88, 121, 295
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	3 cut(s)	157, 184, 398
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	3 cut(s)	93, 284, 398
MseI	TTAA	3 cut(s)	156, 210, 303
MspA1I	CMGCKG	2 cut(s)	97, 134
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	88, 121, 295
NlaIII	CATG	3 cut(s)	59, 356, 379
NlaIV	GGNNCC	1 cut(s)	381
PagI	TCATGA	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	40, 310, 351
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	4 cut(s)	118, 274, 280, 319
RsaNI	GTAC	4 cut(s)	117, 273, 279, 318
SaqAI	TTAA	3 cut(s)	156, 210, 303
SatI	GCNGC	3 cut(s)	39, 309, 350
Sau3AI	GATC	3 cut(s)	88, 121, 295
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	2 cut(s)	274, 280
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	71
SetI	ASST	8 cut(s)	46, 75, 136, 227, 249, 264, 310, 351
SexAI	ACCWGGT	1 cut(s)	69
SfcI	CTRYAG	1 cut(s)	265
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	3 cut(s)	157, 184, 398
SsiI	CCGC	2 cut(s)	95, 192
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	25, 182, 269
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	249, 390
TasI	AATT	3 cut(s)	157, 184, 398
TatI	WGTACW	2 cut(s)	272, 278
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	3 cut(s)	156, 210, 303
Tru9I	TTAA	3 cut(s)	156, 210, 303
TseI	GCWGC	3 cut(s)	38, 308, 349
TspDTI	ATGAA	2 cut(s)	21, 189
Tth111I	GACNNNGTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	276
ZrmI	AGTACT	2 cut(s)	274, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.