Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Forward (+)

64369162 .. 64370622

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG454600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGGAGGAGTCCTTGTTGTGCAAAAGAGGGGTTAAATAGAGGAGCATGGACAGCTATGGAGGACAGAATTCTTAGAGAGTATATAACAACTCATGGTGAAGGCAAATGGAGAAACCTTCCCAAAAGAGCAGCGGGAAGGCTTCCTGGCCGAACAGACAATGAAATCAAGAATTACTGGAACACAAATATTGGGAAGAAAGTTCAAGATCACTCATCCACTAATTCTGAAGCCAATATTACTCACCGCAAACCACCAAATCATCAAACCCAGCAAAAGAACACAAACGTCGTCCGTACCAAGGCATCAAGGTGCACCAAAGTGTTCATTCCCCACCTGTCACAAATGGATGAAGAGAATAATCCTTCTGTTCAACAAGTTGCTGCACCTTTCTTGAATCATGACTATTATGACCAGGTCAACAATAATGATGATCCACCGCTGGGGATGATGGGGACTGGTACTGATCACCAACCAGCTGATGATTTGCCCCCATTCCTTAATTTGGAGATTGATGATGAAAACAGTAATTCTTGCGGGTTTATGGTAGATTTTAAGATGGACGAGAGCTTTCTGTCGGAGTTTCTCAACGTCGATTTTTCTCAGCTCTACAGTAGTACTAGTACTGCTAATGGAGGAGATGGTGTTAAAGCTGCTATTAGTACCAGTTGTGGAGACGATAATCATCATAAGCTGCATGGCCCAGATTTCCAATCATCCATGGCTCCTATCCTCGACTCTGAATTGGACTGGCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

253

Amino Acids

28.27

Weight (kDa)

5.31

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 63	2.2e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	134, 247, 440, 537
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	5 cut(s)	298, 463, 619, 625, 664
AfiI	CCNNNNNNNGG	3 cut(s)	301, 443, 505
AgsI	TTSAA	3 cut(s)	206, 374, 397
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	2 cut(s)	145, 414
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	6 cut(s)	56, 479, 570, 607, 653, 694
AluI	AGCT	6 cut(s)	56, 479, 570, 607, 653, 694
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	669
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	2 cut(s)	148, 700
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	4 cut(s)	131, 383, 653, 694
ApoI	RAATTY	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	110, 236, 461
BaeGI	GKGCMC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	4 cut(s)	143, 370, 640, 681
BccI	CCATC	3 cut(s)	445, 553, 635
BciT130I	CCWGG	2 cut(s)	147, 416
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	669
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	1 cut(s)	610
BisI	GCNGC	4 cut(s)	132, 384, 654, 695
BlsI	GCNGC	4 cut(s)	133, 385, 655, 696
BmcAI	AGTACT	2 cut(s)	619, 625
Bme1390I	CCNGG	2 cut(s)	147, 416
BmgT120I	GGNCC	1 cut(s)	701
BmiI	GGNNCC	1 cut(s)	726
BmrFI	CCNGG	2 cut(s)	147, 416
BmsI	GCATC	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	300, 720
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 630, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 443, 505
Bse1I	ACTGG	4 cut(s)	182, 463, 666, 755
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	147, 416
BseDI	CCNNGG	2 cut(s)	300, 720
BseGI	GGATG	4 cut(s)	215, 355, 453, 716
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	3 cut(s)	301, 443, 505
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	4 cut(s)	182, 463, 666, 755
BseRI	GAGGAG	3 cut(s)	22, 57, 651
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	143, 370, 640, 681
BseYI	CCCAGC	2 cut(s)	270, 442
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	150, 702
BsiHKAI	GWGCWC	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	3 cut(s)	301, 443, 505
BsmAI	GTCTC	1 cut(s)	669
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	150, 702
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	208, 433, 466
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	4 cut(s)	134, 247, 440, 537
BspANI	GGCC	2 cut(s)	150, 702
BspCNI	CTCAG	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	428
BsrI	ACTGG	4 cut(s)	182, 463, 666, 755
BssECI	CCNNGG	2 cut(s)	300, 720
BssMI	GATC	3 cut(s)	208, 433, 466
BssT1I	CCWWGG	2 cut(s)	300, 720
Bst2UI	CCWGG	2 cut(s)	147, 416
Bst4CI	ACNGT	2 cut(s)	527, 614
Bst6I	CTCTTC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	74, 603
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	4 cut(s)	215, 355, 453, 716
BstKTI	GATC	3 cut(s)	211, 436, 469
BstMAI	GTCTC	1 cut(s)	669
BstMBI	GATC	3 cut(s)	208, 433, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	147, 416
BstSCI	CCNGG	2 cut(s)	145, 414
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	4 cut(s)	143, 370, 640, 681
BsuRI	GGCC	2 cut(s)	150, 702
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	4 cut(s)	215, 355, 453, 716
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	701
CsiI	ACCWGGT	1 cut(s)	414
Csp6I	GTAC	5 cut(s)	297, 462, 618, 624, 663
CviAII	CATG	5 cut(s)	48, 95, 401, 698, 721
CviQI	GTAC	5 cut(s)	297, 462, 618, 624, 663
DdeI	CTNAG	2 cut(s)	74, 603
DpnI	GATC	3 cut(s)	210, 435, 468
DpnII	GATC	3 cut(s)	208, 433, 466
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	2 cut(s)	300, 720
Eco57I	CTGAAG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	145, 414
EcoT14I	CCWWGG	2 cut(s)	300, 720
ErhI	CCWWGG	2 cut(s)	300, 720
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	5 cut(s)	51, 98, 404, 701, 724
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	5 cut(s)	47, 94, 400, 697, 720
FauI	CCCGC	2 cut(s)	127, 530
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	132, 384, 654, 695
FokI	GGATG	4 cut(s)	202, 362, 460, 703
Fsp4HI	GCNGC	4 cut(s)	132, 384, 654, 695
FspBI	CTAG	1 cut(s)	621
GluI	GCNGC	4 cut(s)	132, 384, 654, 695
GsaI	CCCAGC	2 cut(s)	274, 446
HaeIII	GGCC	2 cut(s)	150, 702
Hin1II	CATG	5 cut(s)	51, 98, 404, 701, 724
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	10, 397, 737
HphI	GGTGA	3 cut(s)	110, 236, 461
Hpy166II	GTNNAC	2 cut(s)	315, 421
Hpy188I	TCNGA	3 cut(s)	229, 580, 742
Hpy188III	TCNNGA	4 cut(s)	169, 206, 394, 401
Hpy8I	GTNNAC	2 cut(s)	315, 421
Hpy99I	CGWCG	2 cut(s)	293, 596
HpyAV	CCTTC	4 cut(s)	95, 128, 132, 375
HpyCH4III	ACNGT	2 cut(s)	527, 614
HpyCH4IV	ACGT	2 cut(s)	288, 591
HpyCH4V	TGCA	4 cut(s)	23, 315, 386, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	74, 603
HpySE526I	ACGT	2 cut(s)	288, 591
Hsp92II	CATG	5 cut(s)	51, 98, 404, 701, 724
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	208, 433, 466
LmnI	GCTCC	2 cut(s)	44, 730
Lsp1109I	GCAGC	4 cut(s)	143, 370, 640, 681
LweI	GCATC	1 cut(s)	314
MabI	ACCWGGT	1 cut(s)	414
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	2 cut(s)	288, 591
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	210, 435, 468
MboI	GATC	3 cut(s)	208, 433, 466
MboII	GAAGA	2 cut(s)	208, 365
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	6 cut(s)	69, 172, 223, 502, 529, 743
MlyI	GAGTC	2 cut(s)	19, 731
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	5 cut(s)	22, 35, 55, 629, 743
MseI	TTAA	4 cut(s)	35, 501, 555, 648
MslI	CAYNNNNRTG	2 cut(s)	310, 320
MspA1I	CMGCKG	3 cut(s)	134, 442, 479
MspR9I	CCNGG	2 cut(s)	147, 416
MvaI	CCWGG	2 cut(s)	147, 416
MwoI	GCNNNNNNNGC	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	3 cut(s)	208, 433, 466
NlaIII	CATG	5 cut(s)	51, 98, 404, 701, 724
NlaIV	GGNNCC	1 cut(s)	726
NmuCI	GTSAC	1 cut(s)	339
OliI	CACNNNNGTG	1 cut(s)	320
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	133, 385, 655, 696
PleI	GAGTC	2 cut(s)	18, 731
PpsI	GAGTC	2 cut(s)	18, 731
Psp6I	CCWGG	2 cut(s)	145, 414
PspFI	CCCAGC	2 cut(s)	270, 442
PspGI	CCWGG	2 cut(s)	145, 414
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	1 cut(s)	701
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	5 cut(s)	298, 463, 619, 625, 664
RsaNI	GTAC	5 cut(s)	297, 462, 618, 624, 663
RseI	CAYNNNNRTG	2 cut(s)	310, 320
SaqAI	TTAA	4 cut(s)	35, 501, 555, 648
SatI	GCNGC	4 cut(s)	132, 384, 654, 695
Sau3AI	GATC	3 cut(s)	208, 433, 466
Sau96I	GGNCC	1 cut(s)	701
ScaI	AGTACT	2 cut(s)	619, 625
SchI	GAGTC	2 cut(s)	19, 731
ScrFI	CCNGG	2 cut(s)	147, 416
SduI	GDGCHC	1 cut(s)	317
SexAI	ACCWGGT	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	314
SfcI	CTRYAG	1 cut(s)	610
SmiMI	CAYNNNNRTG	2 cut(s)	310, 320
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	6 cut(s)	69, 172, 223, 502, 529, 743
SsiI	CCGC	4 cut(s)	134, 247, 440, 537
SspI	AATATT	2 cut(s)	190, 238
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	145, 414
StyI	CCWWGG	2 cut(s)	300, 720
TaaI	ACNGT	2 cut(s)	527, 614
TaiI	ACGT	2 cut(s)	291, 594
TaqI	TCGA	2 cut(s)	594, 735
TasI	AATT	6 cut(s)	69, 172, 223, 502, 529, 743
TatI	WGTACW	2 cut(s)	617, 623
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	4 cut(s)	35, 501, 555, 648
Tru9I	TTAA	4 cut(s)	35, 501, 555, 648
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	4 cut(s)	131, 383, 653, 694
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	4 cut(s)	177, 316, 366, 534
TspGWI	ACGGA	1 cut(s)	284
Tth111I	GACNNNGTC	1 cut(s)	416
VneI	GTGCAC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	69
XspI	CTAG	1 cut(s)	621
ZrmI	AGTACT	2 cut(s)	619, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.