Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Reverse (-)

3011045 .. 3012596

Gene Structure 1552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAAGAAGTCCTTGTTGTTCAAAAGATGAGGGCTTAAATAGAGGAGCATGGACAGGTATGGAAGACAAAATACTGACAGAGTATATAAGAGTTCATGGTGAGGGCAAATGGAGAAACCTTCCCAAAAGAGCAGGGCTTAAGAGATGTGGGAAAAGTTGCAGGCTCCGATGGTTGAACTATCTAAGACCGGATATCAAGAGAGGAAACATCACTCGTGATGAAGAAGAGCTCATCATCAGGCTCCACAAGCTCCTCGGAAACAGATGGTCTTTGATCGCTGGAAGGCTCCCAGGCCGAACAGACAATGAAATCAAGAATTACTGGAACACTACGATTGGAAAGAAAATTCAAGGACACCCATTTTCCGATGGAAATCGTAAACCACCAAAGCAAACCCAAGAAAACCCAAAACCCACACAGCCCCCTAAAGTCGATACAAATTCATACACCAAAGTGGTCAGAACAAAGGCATCAAGGTGCACCAAAGTGTTCATACCCCAAGAGGCACAAAATCTTGATGACCAAATTCGGGACGACAATGACCACGTGTCCAATAATGCTCCACTGGTGGCCGTTGACCAGGTCACCGATCAAGTTGCTGGGATTGAGGAACCACTGTCACCCATATTTCCATTGGATGATGAAAACAGCTCGTGTAAGTTCATGGTGGATTTTAAGGTGGATGAGAATTTTCTGTCGGATTTTCTTAATGTGGATTTTTCTGAGCTCTATAATAATGGAAATTATGAGGGAGGTAGCGTTGCTTCTGCTACTACATGTGACAAAGTCCCAGATTTCCAATCTTCCTCCATGGTTCCTGTCGTTGACTATGAATTGGACTGGCTCATAGATAATACAGCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

290

Amino Acids

32.83

Weight (kDa)

6.25

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	4 cut(s)	348, 442, 528, 691
AcvI	CACGTG	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	532
AflII	CTTAAG	1 cut(s)	140
AflIII	ACRYGT	2 cut(s)	549, 779
AgsI	TTSAA	3 cut(s)	24, 178, 353
AhdI	GACNNNNNGTC	1 cut(s)	550
AjnI	CCWGG	2 cut(s)	292, 582
AleI	CACNNNNGTG	2 cut(s)	455, 488
AluBI	AGCT	5 cut(s)	232, 253, 654, 730, 863
AluI	AGCT	5 cut(s)	232, 253, 654, 730, 863
Alw21I	GWGCWC	3 cut(s)	234, 485, 732
Alw44I	GTGCAC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	295, 573
ApaLI	GTGCAC	1 cut(s)	481
ApoI	RAATTY	4 cut(s)	348, 442, 528, 691
AsuHPI	GGTGA	3 cut(s)	113, 580, 615
BaeGI	GKGCMC	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	234, 732
BarI	GAAGNNNNNNTAC	4 cut(s)	57, 89, 751, 783
BauI	CACGAG	2 cut(s)	216, 655
BbrPI	CACGTG	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	3 cut(s)	234, 485, 732
BccI	CCATC	3 cut(s)	165, 261, 365
BceAI	ACGGC	1 cut(s)	560
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	2 cut(s)	294, 584
BfrI	CTTAAG	1 cut(s)	140
Bme1390I	CCNGG	2 cut(s)	294, 584
BmeRI	GACNNNNNGTC	1 cut(s)	550
BmiI	GGNNCC	5 cut(s)	167, 245, 290, 615, 819
BmrFI	CCNGG	2 cut(s)	294, 584
BmsI	GCATC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	256, 292, 813
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse1I	ACTGG	3 cut(s)	329, 573, 848
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	294, 584
BseDI	CCNNGG	3 cut(s)	256, 292, 813
BseGI	GGATG	2 cut(s)	646, 691
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	3 cut(s)	329, 573, 848
BseRI	GAGGAG	2 cut(s)	60, 245
BseSI	GKGCMC	1 cut(s)	485
BseYI	CCCAGC	1 cut(s)	602
BshFI	GGCC	2 cut(s)	297, 575
BsiHKAI	GWGCWC	3 cut(s)	234, 485, 732
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	2 cut(s)	548, 776
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmFI	GGGAC	2 cut(s)	548, 776
BsnI	GGCC	2 cut(s)	297, 575
Bsp1286I	GDGCHC	3 cut(s)	234, 485, 732
Bsp143I	GATC	2 cut(s)	276, 592
Bsp19I	CCATGG	1 cut(s)	813
BspANI	GGCC	2 cut(s)	297, 575
BspCNI	CTCAG	1 cut(s)	718
BspLI	GGNNCC	5 cut(s)	167, 245, 290, 615, 819
BspQI	GCTCTTC	1 cut(s)	222
BspTI	CTTAAG	1 cut(s)	140
BsrI	ACTGG	3 cut(s)	329, 573, 848
BssECI	CCNNGG	3 cut(s)	256, 292, 813
BssMI	GATC	2 cut(s)	276, 592
BssSI	CACGAG	2 cut(s)	216, 655
BssT1I	CCWWGG	1 cut(s)	813
Bst2BI	CACGAG	2 cut(s)	216, 655
Bst2UI	CCWGG	2 cut(s)	294, 584
Bst4CI	ACNGT	1 cut(s)	621
Bst6I	CTCTTC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	185, 726
BstDSI	CCRYGG	1 cut(s)	813
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	2 cut(s)	646, 691
BstKTI	GATC	2 cut(s)	279, 595
BstMBI	GATC	2 cut(s)	276, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	294, 584
BstNSI	RCATGY	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	292, 582
BstSLI	GKGCMC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	297, 575
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	646, 691
BtsIMutI	CAGTG	2 cut(s)	566, 617
Cac8I	GCNNGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	582
CviAII	CATG	5 cut(s)	51, 98, 667, 780, 814
DdeI	CTNAG	2 cut(s)	185, 726
DpnI	GATC	2 cut(s)	278, 594
DpnII	GATC	2 cut(s)	276, 592
DriI	GACNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	2 cut(s)	232, 730
Eco130I	CCWWGG	1 cut(s)	813
Eco24I	GRGCYC	2 cut(s)	234, 732
Eco32I	GATATC	1 cut(s)	196
Eco53kI	GAGCTC	2 cut(s)	232, 730
Eco72I	CACGTG	1 cut(s)	550
Eco91I	GGTNACC	1 cut(s)	586
EcoICRI	GAGCTC	2 cut(s)	232, 730
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	2 cut(s)	292, 582
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	813
EcoT38I	GRGCYC	2 cut(s)	234, 732
ErhI	CCWWGG	1 cut(s)	813
FaeI	CATG	5 cut(s)	54, 101, 670, 783, 817
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	548, 776
FatI	CATG	5 cut(s)	50, 97, 666, 779, 813
FokI	GGATG	2 cut(s)	653, 698
FriOI	GRGCYC	2 cut(s)	234, 732
GsaI	CCCAGC	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	297, 575
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	5 cut(s)	54, 101, 670, 783, 817
HincII	GTYRAC	2 cut(s)	580, 829
HindII	GTYRAC	2 cut(s)	580, 829
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	3 cut(s)	113, 580, 615
Hpy166II	GTNNAC	4 cut(s)	383, 483, 580, 829
Hpy188I	TCNGA	6 cut(s)	170, 260, 370, 464, 703, 727
Hpy188III	TCNNGA	5 cut(s)	199, 218, 316, 518, 533
Hpy8I	GTNNAC	4 cut(s)	383, 483, 580, 829
HpyAV	CCTTC	2 cut(s)	131, 279
HpyCH4III	ACNGT	1 cut(s)	621
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	2 cut(s)	162, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	2 cut(s)	185, 726
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	5 cut(s)	54, 101, 670, 783, 817
Kzo9I	GATC	2 cut(s)	276, 592
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	6 cut(s)	47, 171, 249, 258, 294, 568
LweI	GCATC	1 cut(s)	482
MabI	ACCWGGT	1 cut(s)	582
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	586, 621, 782
MalI	GATC	2 cut(s)	278, 594
MboI	GATC	2 cut(s)	276, 592
MboII	GAAGA	5 cut(s)	18, 77, 236, 239, 798
MhlI	GDGCHC	3 cut(s)	234, 485, 732
MluCI	AATT	7 cut(s)	319, 348, 442, 528, 691, 745, 836
MmeI	TCCRAC	1 cut(s)	681
MseI	TTAA	5 cut(s)	38, 141, 678, 711, 868
MslI	CAYNNNNRTG	3 cut(s)	455, 478, 488
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	294, 584
MvaI	CCWGG	2 cut(s)	294, 584
MwoI	GCNNNNNNNGC	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	813
NdeII	GATC	2 cut(s)	276, 592
NlaIII	CATG	5 cut(s)	54, 101, 670, 783, 817
NlaIV	GGNNCC	5 cut(s)	167, 245, 290, 615, 819
NmuCI	GTSAC	3 cut(s)	586, 621, 782
NspI	RCATGY	1 cut(s)	783
OliI	CACNNNNGTG	2 cut(s)	455, 488
PciI	ACATGT	1 cut(s)	779
PciSI	GCTCTTC	1 cut(s)	222
PflFI	GACNNNGTC	2 cut(s)	584, 788
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
Ppu21I	YACGTR	1 cut(s)	550
PscI	ACATGT	1 cut(s)	779
Psp124BI	GAGCTC	2 cut(s)	234, 732
Psp6I	CCWGG	2 cut(s)	292, 582
PspCI	CACGTG	1 cut(s)	550
PspEI	GGTNACC	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	602
PspGI	CCWGG	2 cut(s)	292, 582
PspN4I	GGNNCC	5 cut(s)	167, 245, 290, 615, 819
PsyI	GACNNNGTC	2 cut(s)	584, 788
RseI	CAYNNNNRTG	3 cut(s)	455, 478, 488
SacI	GAGCTC	2 cut(s)	234, 732
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	5 cut(s)	38, 141, 678, 711, 868
Sau3AI	GATC	2 cut(s)	276, 592
ScrFI	CCNGG	2 cut(s)	294, 584
SduI	GDGCHC	3 cut(s)	234, 485, 732
SexAI	ACCWGGT	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	482
SmiMI	CAYNNNNRTG	3 cut(s)	455, 478, 488
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	7 cut(s)	319, 348, 442, 528, 691, 745, 836
SstI	GAGCTC	2 cut(s)	234, 732
StyD4I	CCNGG	2 cut(s)	292, 582
StyI	CCWWGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	621
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	435
TasI	AATT	7 cut(s)	319, 348, 442, 528, 691, 745, 836
Tru1I	TTAA	5 cut(s)	38, 141, 678, 711, 868
Tru9I	TTAA	5 cut(s)	38, 141, 678, 711, 868
TscAI	CASTG	2 cut(s)	573, 624
TseFI	GTSAC	3 cut(s)	586, 621, 782
Tsp45I	GTSAC	3 cut(s)	586, 621, 782
TspDTI	ATGAA	8 cut(s)	86, 237, 324, 435, 484, 655, 660, 849
TspRI	CASTG	2 cut(s)	573, 624
Tth111I	GACNNNGTC	2 cut(s)	584, 788
Vha464I	CTTAAG	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	481
XapI	RAATTY	4 cut(s)	348, 442, 528, 691
XceI	RCATGY	1 cut(s)	783
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.