Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Reverse (-)

15860579 .. 15862370

Gene Structure 1792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1184000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGAAGGAGTCCTTGTTGTTCAAAGGATGAGGGGTTGAATAGAGGAGCATGGACAGCTATGGAAGACAAAGTACTGACTGAATATATCGGAAATCATGGTGAAGGGAAATGGAGAAACCTTCCCAAAAGAGCAGGGCTCAAGAGATGTGGCAAAAGTTGCAGGCTGCGATGGTTGAACTACCTAAGACCTGACATCAAGAGAGGAAACATCACTCGTGATGAAGAAGAGCTCATCATCAGGCTTCACAAGCTCCTGGGCAACAGATGGTCTTTGATAGCTGGAAGGCTTCCAGGCCGAACAGACAATGAAATCAAGAATTATTGGAACACTACAATTGGAAAGAGAATTCAAGTTGAAGGTCGCTCATGTTCTGATGGAAATCGTAGACCAACCCAAGAAAAACCAAAACCTACGCTGTCACCTAAACCTAGTACAAATATTTCATGCACCAAAGTGGTCAGAACCAAAGCATCAAGGTGCACAAAAGTGGTCTTGCCCCATGAGTCCCAAAAGTTTGGTTACAGTACTGAACAAGTGGTCAATGCAGCACCAACACTAAACCAGGCGGTGAATAATCCAATGGTGGGGATTGATGAACCTTTGTTACCAATGTCATTTTTGGACGATGAAAACAATAATTCGTGTGAGTTTTTGGTGGATTTTAAGATGGACGAGAATTTTCTATCCGATTTTCTTAATGTCGATTTCTCTGTGCTCTATAACAATGAGGGAGCTGGTAAAGCTGCTGCTGCTGCTACCACTGAAGACACGAGTAATAAGTTGCATGGCCCAGATCTCCGATCATCCAAGGCTCCTATCATTGAATCTGAATTGGACTGCTGGCTCGTAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.14

Weight (kDa)

8.67

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	5.9e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	2e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 111	2.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 113	1.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	388
AciI	CCGC	1 cut(s)	569
AcsI	RAATTY	2 cut(s)	348, 679
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	75, 436, 529
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	6 cut(s)	24, 40, 178, 353, 359, 827
AjnI	CCWGG	3 cut(s)	255, 292, 564
AleI	CACNNNNGTG	2 cut(s)	455, 488
AluBI	AGCT	6 cut(s)	59, 232, 253, 281, 737, 746
AluI	AGCT	6 cut(s)	59, 232, 253, 281, 737, 746
Alw21I	GWGCWC	3 cut(s)	234, 485, 720
Alw44I	GTGCAC	1 cut(s)	481
AoxI	GGCC	2 cut(s)	295, 790
ApaLI	GTGCAC	1 cut(s)	481
ApeKI	GCWGC	6 cut(s)	166, 548, 746, 749, 752, 755
ApoI	RAATTY	2 cut(s)	348, 679
AspS9I	GGNCC	1 cut(s)	791
AsuHPI	GGTGA	3 cut(s)	113, 414, 583
BaeGI	GKGCMC	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	141, 234
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BauI	CACGAG	2 cut(s)	216, 772
BbsI	GAAGAC	2 cut(s)	72, 774
Bbv12I	GWGCWC	3 cut(s)	234, 485, 720
BbvI	GCAGC	6 cut(s)	153, 560, 733, 736, 739, 742
BccI	CCATC	4 cut(s)	165, 261, 371, 664
BciT130I	CCWGG	3 cut(s)	257, 294, 566
BfaI	CTAG	1 cut(s)	432
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	6 cut(s)	167, 549, 747, 750, 753, 756
BlsI	GCNGC	6 cut(s)	168, 550, 748, 751, 754, 757
BmcAI	AGTACT	2 cut(s)	75, 529
Bme1390I	CCNGG	3 cut(s)	257, 294, 566
BmgT120I	GGNCC	1 cut(s)	791
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	3 cut(s)	257, 294, 566
BmsI	GCATC	1 cut(s)	482
BpiI	GAAGAC	2 cut(s)	72, 774
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpuEI	CTTGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	256, 810
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	381
BseBI	CCWGG	3 cut(s)	257, 294, 566
BseDI	CCNNGG	2 cut(s)	256, 810
BseGI	GGATG	2 cut(s)	34, 806
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	6 cut(s)	153, 560, 733, 736, 739, 742
BshFI	GGCC	2 cut(s)	297, 792
BsiHKAI	GWGCWC	3 cut(s)	234, 485, 720
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	297, 792
Bsp1286I	GDGCHC	4 cut(s)	141, 234, 485, 720
Bsp143I	GATC	2 cut(s)	796, 803
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	2 cut(s)	297, 792
BspLI	GGNNCC	1 cut(s)	816
BspQI	GCTCTTC	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	256, 810
BssMI	GATC	2 cut(s)	796, 803
BssSI	CACGAG	2 cut(s)	216, 772
BssT1I	CCWWGG	1 cut(s)	810
Bst2BI	CACGAG	2 cut(s)	216, 772
Bst2UI	CCWGG	3 cut(s)	257, 294, 566
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	164, 845
BstDEI	CTNAG	1 cut(s)	185
BstF5I	GGATG	2 cut(s)	34, 806
BstKTI	GATC	2 cut(s)	799, 806
BstMBI	GATC	2 cut(s)	796, 803
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 159, 250, 743, 752, 755
BstNI	CCWGG	3 cut(s)	257, 294, 566
BstSCI	CCNGG	3 cut(s)	255, 292, 564
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	6 cut(s)	153, 560, 733, 736, 739, 742
BstV2I	GAAGAC	2 cut(s)	72, 774
BstX2I	RGATCY	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	297, 792
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	34, 806
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	164, 845
Cfr13I	GGNCC	1 cut(s)	791
Csp6I	GTAC	3 cut(s)	74, 435, 528
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	6 cut(s)	51, 98, 369, 447, 503, 788
CviQI	GTAC	3 cut(s)	74, 435, 528
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	2 cut(s)	798, 805
DpnII	GATC	2 cut(s)	796, 803
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	810
Eco24I	GRGCYC	2 cut(s)	141, 234
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	348
EcoRII	CCWGG	3 cut(s)	255, 292, 564
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	2 cut(s)	141, 234
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	6 cut(s)	54, 101, 372, 450, 506, 791
FaiI	YATR	9 cut(s)	52, 62, 87, 99, 370, 448, 504, 723, 789
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	6 cut(s)	50, 97, 368, 446, 502, 787
FblI	GTMKAC	1 cut(s)	388
Fnu4HI	GCNGC	6 cut(s)	167, 549, 747, 750, 753, 756
FokI	GGATG	2 cut(s)	41, 793
FriOI	GRGCYC	2 cut(s)	141, 234
Fsp4HI	GCNGC	6 cut(s)	167, 549, 747, 750, 753, 756
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	6 cut(s)	167, 549, 747, 750, 753, 756
HaeIII	GGCC	2 cut(s)	297, 792
Hin1II	CATG	6 cut(s)	54, 101, 372, 450, 506, 791
HinfI	GANTC	3 cut(s)	10, 506, 827
HphI	GGTGA	3 cut(s)	113, 414, 583
Hpy166II	GTNNAC	2 cut(s)	389, 483
Hpy188I	TCNGA	6 cut(s)	92, 376, 464, 691, 803, 832
Hpy188III	TCNNGA	4 cut(s)	142, 199, 218, 316
Hpy8I	GTNNAC	2 cut(s)	389, 483
HpyAV	CCTTC	4 cut(s)	98, 131, 279, 353
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	5 cut(s)	162, 450, 483, 548, 787
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 159, 250, 743, 752, 755
HpyF3I	CTNAG	1 cut(s)	185
Hsp92II	CATG	6 cut(s)	54, 101, 372, 450, 506, 791
Kzo9I	GATC	2 cut(s)	796, 803
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	4 cut(s)	47, 258, 734, 820
Lsp1109I	GCAGC	6 cut(s)	153, 560, 733, 736, 739, 742
LweI	GCATC	1 cut(s)	482
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	420, 521, 606
MalI	GATC	2 cut(s)	798, 805
MboI	GATC	2 cut(s)	796, 803
MboII	GAAGA	4 cut(s)	77, 236, 239, 779
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	4 cut(s)	141, 234, 485, 720
MluCI	AATT	7 cut(s)	319, 336, 348, 640, 679, 833, 856
MlyI	GAGTC	2 cut(s)	19, 515
MnlI	CCTC	4 cut(s)	25, 38, 197, 724
MseI	TTAA	3 cut(s)	666, 699, 859
MslI	CAYNNNNRTG	3 cut(s)	455, 478, 488
MspR9I	CCNGG	3 cut(s)	257, 294, 566
MunI	CAATTG	1 cut(s)	336
MvaI	CCWGG	3 cut(s)	257, 294, 566
MwoI	GCNNNNNNNGC	6 cut(s)	56, 159, 250, 743, 752, 755
NdeII	GATC	2 cut(s)	796, 803
NlaIII	CATG	6 cut(s)	54, 101, 372, 450, 506, 791
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	1 cut(s)	420
OliI	CACNNNNGTG	2 cut(s)	455, 488
PciSI	GCTCTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	827
PkrI	GCNGC	6 cut(s)	168, 550, 748, 751, 754, 757
PleI	GAGTC	2 cut(s)	18, 514
PpsI	GAGTC	2 cut(s)	18, 514
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	3 cut(s)	255, 292, 564
PspGI	CCWGG	3 cut(s)	255, 292, 564
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	791
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
PsuI	RGATCY	1 cut(s)	796
RsaI	GTAC	3 cut(s)	75, 436, 529
RsaNI	GTAC	3 cut(s)	74, 435, 528
RseI	CAYNNNNRTG	3 cut(s)	455, 478, 488
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	666, 699, 859
SatI	GCNGC	6 cut(s)	167, 549, 747, 750, 753, 756
Sau3AI	GATC	2 cut(s)	796, 803
Sau96I	GGNCC	1 cut(s)	791
ScaI	AGTACT	2 cut(s)	75, 529
SchI	GAGTC	2 cut(s)	19, 515
ScrFI	CCNGG	3 cut(s)	257, 294, 566
SduI	GDGCHC	4 cut(s)	141, 234, 485, 720
SfaNI	GCATC	1 cut(s)	482
SmiMI	CAYNNNNRTG	3 cut(s)	455, 478, 488
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	7 cut(s)	319, 336, 348, 640, 679, 833, 856
SsiI	CCGC	1 cut(s)	569
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	432
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	255, 292, 564
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	1 cut(s)	705
TasI	AATT	7 cut(s)	319, 336, 348, 640, 679, 833, 856
TatI	WGTACW	3 cut(s)	73, 434, 527
TfiI	GAWTC	1 cut(s)	827
Tru1I	TTAA	3 cut(s)	666, 699, 859
Tru9I	TTAA	3 cut(s)	666, 699, 859
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	6 cut(s)	166, 548, 746, 749, 752, 755
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	5 cut(s)	237, 324, 435, 612, 645
TspRI	CASTG	1 cut(s)	769
VneI	GTGCAC	1 cut(s)	481
XapI	RAATTY	2 cut(s)	348, 679
XmiI	GTMKAC	1 cut(s)	388
XspI	CTAG	1 cut(s)	432
ZrmI	AGTACT	2 cut(s)	75, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.