Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Forward (+)

58579904 .. 58581385

Gene Structure 1482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG430600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGGAGGAGTCCTTGTTGTGCAAAAGAGGGGTTAAATAGAGGAGCATGGACAGCTATGGAGGACAGAATTCTTAGAGAGTATATAACAACTCATGGTGAAGGCAAATGGAGAAACCTTCCCAAAAGAGCAGGGCTTAAGAGATGTGGAAAGAGTTGCAGATTACGATGGTTGAACTATCTAAGACCTGATATCAAGAGAGGAAACATCACTCGGGATGAAGAAGAGCTCATTATCCGGCTTCATAAGCTCTTGGGAAACAGATGGTCTTTGATAGCGGGAAGGCTTCCTGGCCGAACAGACAATGAAATCAAGAATTACTGGAACACAAATATTGGGAAGAAAGTTCAAGATCACTCATCTACTAATTCTGAAGCCAATATTACTCACCGCAAACCACCAAATCATCAAACCCAGCAAAAGAACACAAACGTCGTCCGTACCAAGGCATCAAGGTGCACCAAAGTGTTCATTCCCCACCTGTCACAAATGGATGAAGAGACTAATCCTACTGTTCAACAAGTTGCTGCACCTTTCCTGAATCATGACTATTATGACCAGGTCAACAATAATGATGATCCACCGCTGAGGATGATGGGGACTGATTTTAAGATGGACGAGAGCTTTCTTTCGGAGTTTCTCAACGTCGATTTTTCTCAGCTCTACAGTAGTACTAGTACTGCTAATGGAGGAGATCGTGTTAAAGCTGCTATTAGTACCAGTTGTGGAGACGATAATCATCATAAGCTGCATGGCCCAGATTTCCAATCATCCATGGCTCCTATCCTCGACTCTGAATTGGACTGGCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

271

Amino Acids

30.98

Weight (kDa)

8.85

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	1.7e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	1.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 118	1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	278, 391, 584
AclWI	GGATC	1 cut(s)	572
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	4 cut(s)	442, 673, 679, 718
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflII	CTTAAG	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	175, 350, 518
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	289, 558
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	7 cut(s)	56, 229, 250, 624, 661, 707, 748
AluI	AGCT	7 cut(s)	56, 229, 250, 624, 661, 707, 748
Alw21I	GWGCWC	2 cut(s)	231, 461
Alw26I	GTCTC	2 cut(s)	494, 723
Alw44I	GTGCAC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	292, 754
ApaLI	GTGCAC	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	527, 707, 748
ApoI	RAATTY	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	755
AsuHPI	GGTGA	2 cut(s)	110, 380
AvaI	CYCGRG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	231, 461
BbvCI	CCTCAGC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	514, 694, 735
BccI	CCATC	4 cut(s)	162, 258, 589, 607
BciT130I	CCWGG	2 cut(s)	291, 560
BcoDI	GTCTC	2 cut(s)	494, 723
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	1 cut(s)	675
BfmI	CTRYAG	1 cut(s)	664
BfrI	CTTAAG	1 cut(s)	137
BisI	GCNGC	3 cut(s)	528, 708, 749
BlsI	GCNGC	3 cut(s)	529, 709, 750
BmcAI	AGTACT	2 cut(s)	673, 679
Bme1390I	CCNGG	2 cut(s)	291, 560
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	2 cut(s)	291, 560
BmsI	GCATC	1 cut(s)	458
Bpu10I	CCTNAGC	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	444, 774
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 684, 714
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	326, 720, 809
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	2 cut(s)	291, 560
BseDI	CCNNGG	2 cut(s)	444, 774
BseGI	GGATG	4 cut(s)	223, 499, 597, 770
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	578, 671
BseNI	ACTGG	3 cut(s)	326, 720, 809
BseRI	GAGGAG	3 cut(s)	22, 57, 705
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	514, 694, 735
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	294, 756
BsiHKAI	GWGCWC	2 cut(s)	231, 461
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	494, 723
BsmBI	CGTCTC	1 cut(s)	723
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	2 cut(s)	294, 756
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	231, 461
Bsp143I	GATC	3 cut(s)	352, 577, 694
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	3 cut(s)	278, 391, 584
BspANI	GGCC	2 cut(s)	294, 756
BspCNI	CTCAG	2 cut(s)	579, 670
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	572
BspQI	GCTCTTC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	326, 720, 809
BssECI	CCNNGG	2 cut(s)	444, 774
BssMI	GATC	3 cut(s)	352, 577, 694
BssT1I	CCWWGG	2 cut(s)	444, 774
Bst2UI	CCWGG	2 cut(s)	291, 560
Bst4CI	ACNGT	2 cut(s)	514, 668
Bst6I	CTCTTC	2 cut(s)	219, 492
BstAFI	CTTAAG	1 cut(s)	137
BstDEI	CTNAG	4 cut(s)	74, 182, 587, 657
BstDSI	CCRYGG	1 cut(s)	774
BstF5I	GGATG	4 cut(s)	223, 499, 597, 770
BstKTI	GATC	3 cut(s)	355, 580, 697
BstMAI	GTCTC	2 cut(s)	494, 723
BstMBI	GATC	3 cut(s)	352, 577, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 247
BstNI	CCWGG	2 cut(s)	291, 560
BstSCI	CCNGG	2 cut(s)	289, 558
BstSFI	CTRYAG	1 cut(s)	664
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	3 cut(s)	514, 694, 735
BsuRI	GGCC	2 cut(s)	294, 756
BtgI	CCRYGG	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	223, 499, 597, 770
CciI	TCATGA	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	755
CsiI	ACCWGGT	1 cut(s)	558
Csp6I	GTAC	4 cut(s)	441, 672, 678, 717
CviAII	CATG	5 cut(s)	48, 95, 545, 752, 775
CviQI	GTAC	4 cut(s)	441, 672, 678, 717
DdeI	CTNAG	4 cut(s)	74, 182, 587, 657
DpnI	GATC	3 cut(s)	354, 579, 696
DpnII	GATC	3 cut(s)	352, 577, 694
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	219, 492
EarI	CTCTTC	2 cut(s)	219, 492
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	444, 774
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	69
EcoRII	CCWGG	2 cut(s)	289, 558
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	444, 774
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	444, 774
Esp3I	CGTCTC	1 cut(s)	723
FaeI	CATG	5 cut(s)	51, 98, 548, 755, 778
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	5 cut(s)	47, 94, 544, 751, 774
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	528, 708, 749
FokI	GGATG	4 cut(s)	230, 506, 604, 757
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	528, 708, 749
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	3 cut(s)	528, 708, 749
GsaI	CCCAGC	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	294, 756
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	5 cut(s)	51, 98, 548, 755, 778
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	10, 541, 791
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	110, 380
Hpy166II	GTNNAC	2 cut(s)	459, 565
Hpy188I	TCNGA	3 cut(s)	373, 634, 796
Hpy188III	TCNNGA	6 cut(s)	196, 215, 313, 350, 538, 545
Hpy8I	GTNNAC	2 cut(s)	459, 565
Hpy99I	CGWCG	2 cut(s)	437, 650
HpyAV	CCTTC	3 cut(s)	95, 128, 276
HpyCH4III	ACNGT	2 cut(s)	514, 668
HpyCH4IV	ACGT	2 cut(s)	432, 645
HpyCH4V	TGCA	5 cut(s)	23, 159, 459, 530, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 247
HpyF3I	CTNAG	4 cut(s)	74, 182, 587, 657
HpySE526I	ACGT	2 cut(s)	432, 645
Hsp92II	CATG	5 cut(s)	51, 98, 548, 755, 778
Kzo9I	GATC	3 cut(s)	352, 577, 694
LguI	GCTCTTC	1 cut(s)	219
LmnI	GCTCC	2 cut(s)	44, 784
Lsp1109I	GCAGC	3 cut(s)	514, 694, 735
LweI	GCATC	1 cut(s)	458
MabI	ACCWGGT	1 cut(s)	558
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	2 cut(s)	432, 645
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	3 cut(s)	354, 579, 696
MboI	GATC	3 cut(s)	352, 577, 694
MboII	GAAGA	4 cut(s)	233, 236, 352, 509
MhlI	GDGCHC	2 cut(s)	231, 461
MluCI	AATT	4 cut(s)	69, 316, 367, 797
MlyI	GAGTC	2 cut(s)	19, 785
MnlI	CCTC	7 cut(s)	22, 35, 55, 194, 582, 683, 797
MseI	TTAA	4 cut(s)	35, 138, 609, 702
MslI	CAYNNNNRTG	2 cut(s)	454, 464
MspA1I	CMGCKG	1 cut(s)	586
MspCI	CTTAAG	1 cut(s)	137
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	291, 560
MvaI	CCWGG	2 cut(s)	291, 560
MwoI	GCNNNNNNNGC	2 cut(s)	53, 247
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	3 cut(s)	352, 577, 694
NlaIII	CATG	5 cut(s)	51, 98, 548, 755, 778
NlaIV	GGNNCC	1 cut(s)	780
NmuCI	GTSAC	1 cut(s)	483
OliI	CACNNNNGTG	1 cut(s)	464
PagI	TCATGA	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	541
PflFI	GACNNNGTC	1 cut(s)	560
PkrI	GCNGC	3 cut(s)	529, 709, 750
PleI	GAGTC	2 cut(s)	18, 785
PpsI	GAGTC	2 cut(s)	18, 785
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	289, 558
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	2 cut(s)	289, 558
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	755
PsyI	GACNNNGTC	1 cut(s)	560
RsaI	GTAC	4 cut(s)	442, 673, 679, 718
RsaNI	GTAC	4 cut(s)	441, 672, 678, 717
RseI	CAYNNNNRTG	2 cut(s)	454, 464
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	35, 138, 609, 702
SatI	GCNGC	3 cut(s)	528, 708, 749
Sau3AI	GATC	3 cut(s)	352, 577, 694
Sau96I	GGNCC	1 cut(s)	755
ScaI	AGTACT	2 cut(s)	673, 679
SchI	GAGTC	2 cut(s)	19, 785
ScrFI	CCNGG	2 cut(s)	291, 560
SduI	GDGCHC	2 cut(s)	231, 461
SexAI	ACCWGGT	1 cut(s)	558
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	1 cut(s)	664
SmiMI	CAYNNNNRTG	2 cut(s)	454, 464
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	4 cut(s)	69, 316, 367, 797
SsiI	CCGC	3 cut(s)	278, 391, 584
SspI	AATATT	2 cut(s)	334, 382
SspMI	CTAG	1 cut(s)	675
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	289, 558
StyI	CCWWGG	2 cut(s)	444, 774
TaaI	ACNGT	2 cut(s)	514, 668
TaiI	ACGT	2 cut(s)	435, 648
TaqI	TCGA	2 cut(s)	648, 789
TasI	AATT	4 cut(s)	69, 316, 367, 797
TatI	WGTACW	2 cut(s)	671, 677
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	4 cut(s)	35, 138, 609, 702
Tru9I	TTAA	4 cut(s)	35, 138, 609, 702
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	3 cut(s)	527, 707, 748
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	5 cut(s)	233, 234, 321, 460, 510
TspGWI	ACGGA	1 cut(s)	428
Tth111I	GACNNNGTC	1 cut(s)	560
Vha464I	CTTAAG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	457
XapI	RAATTY	1 cut(s)	69
XspI	CTAG	1 cut(s)	675
ZrmI	AGTACT	2 cut(s)	673, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.