FvH4_6g36850

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017700
Physical Location & Seq
Forward (+)
28929577 .. 28930510
934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36850.t1

Sequence Viewer

Length: 531 bp
ATGATTAACCAGCATGAAACCCTTTGCATGCATGAACTTAGCCATTCAGAGCCATTAATCCATCATCGATATCAGCTTATTCATCATATTCATCGCCATCGAAACAACAACATGAAGCAGCAGCTGATAAGGCACATTGGCGCGTGGCCGAAGAACAGTATTAACCGGCTATCGCTTTGGTTTCCTCCAAATCACAAACATCCGGATGTTTCTGGTGGAGTCGTGGACTCCGGCGAGAACTCTGCAGAAGCGTTGCTCGCCGGAGAGTTGTCTGATGGCCGACGGGCCTCGGTGCAAGTTCCGAAAGGGTTCATAGCAGTATACGTCGGCCCCGAGCTTCGCAGGTTTGTGATTCCTATGAGTTGCTTGTCGTCGCCAGATTTTAGGGTTTTGATGGATAGGGTGGCAGAGGAGTATGGATTTGAACAAGAAGGTGCACTTAGAATTCCTTGTGATGCACAAGATTTTGAGCATATTTTGGTCAGGTATCTGGCAAACATCAAGAAGAATGAGAAGAAGATCAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

177

Amino Acids

20.31

Weight (kDa)

8.83

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 95 - 160 1.6e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g36850
malus_domestica MD09G1166300.v1.1
prunus_persica Prupe.3G024000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0149241
rosa_laevigata RLG00000020386
rosa_multiflora Rmu_sc0001615.1_g000008
rosa_roxburghii Rroxscaffold_2G00098280
rosa_rugosa Rorug02G0410000
rosa_samantha Rh2AG470600 Rh2BG482900 Rh2DG491900
rosa_wichuraiana Rw2G038270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 202
AcoI YGGCCR 2 cut(s) 146, 277
AcsI RAATTY 1 cut(s) 444
AgsI TTSAA 1 cut(s) 425
AluBI AGCT 3 cut(s) 76, 124, 337
AluI AGCT 3 cut(s) 76, 124, 337
Alw21I GWGCWC 1 cut(s) 439
Alw44I GTGCAC 1 cut(s) 435
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 332
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 4 cut(s) 146, 277, 285, 328
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 118, 121
ApoI RAATTY 1 cut(s) 444
AseI ATTAAT 1 cut(s) 56
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 285, 329
AvaI CYCGRG 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 130, 133
BccI CCATC 4 cut(s) 69, 105, 269, 388
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BfmI CTRYAG 1 cut(s) 243
BfuAI ACCTGC 1 cut(s) 333
BisI GCNGC 2 cut(s) 119, 122
BlsI GCNGC 2 cut(s) 120, 123
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 285, 329
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 288
BsaWI WCCGGW 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 199, 211
BseRI GAGGAG 1 cut(s) 425
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 2 cut(s) 130, 133
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 148, 279, 287, 330
BshVI ATCGAT 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 4 cut(s) 166, 203, 231, 261
BsnI GGCC 4 cut(s) 148, 279, 287, 330
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 439
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 1 cut(s) 519
BspANI GGCC 4 cut(s) 148, 279, 287, 330
BspDI ATCGAT 1 cut(s) 67
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 519
BssNAI GTATAC 1 cut(s) 322
Bst1107I GTATAC 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 29, 258
BstDEI CTNAG 2 cut(s) 38, 440
BstF5I GGATG 2 cut(s) 199, 211
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 143
BstKTI GATC 1 cut(s) 522
BstMBI GATC 1 cut(s) 519
BstMWI GCNNNNNNNGC 2 cut(s) 130, 257
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 439
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 130, 133
BstZ17I GTATAC 1 cut(s) 322
Bsu15I ATCGAT 1 cut(s) 67
BsuRI GGCC 4 cut(s) 148, 279, 287, 330
BsuTUI ATCGAT 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 199, 211
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 29, 258
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 285, 329
ClaI ATCGAT 1 cut(s) 67
CviAII CATG 4 cut(s) 14, 28, 32, 112
DdeI CTNAG 2 cut(s) 38, 440
DpnI GATC 1 cut(s) 521
DpnII GATC 1 cut(s) 519
EaeI YGGCCR 2 cut(s) 146, 277
Eco32I GATATC 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 444
EcoRV GATATC 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 33
FaeI CATG 4 cut(s) 17, 31, 35, 115
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 4 cut(s) 13, 27, 31, 111
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 2 cut(s) 119, 122
FokI GGATG 2 cut(s) 186, 218
Fsp4HI GCNGC 2 cut(s) 119, 122
GlaI GCGC 1 cut(s) 142
GluI GCNGC 2 cut(s) 119, 122
HaeIII GGCC 4 cut(s) 148, 279, 287, 330
HapII CCGG 4 cut(s) 166, 203, 231, 261
HhaI GCGC 1 cut(s) 143
Hin1II CATG 4 cut(s) 17, 31, 35, 115
Hin6I GCGC 1 cut(s) 141
HinP1I GCGC 1 cut(s) 141
HinfI GANTC 3 cut(s) 219, 227, 352
HpaII CCGG 4 cut(s) 166, 203, 231, 261
Hpy166II GTNNAC 3 cut(s) 226, 322, 437
Hpy188I TCNGA 4 cut(s) 49, 274, 303, 524
Hpy188III TCNNGA 2 cut(s) 203, 502
Hpy8I GTNNAC 3 cut(s) 226, 322, 437
Hpy99I CGWCG 3 cut(s) 285, 329, 376
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 6 cut(s) 27, 31, 245, 295, 437, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 257
HpyF3I CTNAG 2 cut(s) 38, 440
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 4 cut(s) 17, 31, 35, 115
HspAI GCGC 1 cut(s) 141
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 519
Lsp1109I GCAGC 2 cut(s) 130, 133
LweI GCATC 1 cut(s) 445
MaeII ACGT 1 cut(s) 324
MalI GATC 1 cut(s) 521
MboI GATC 1 cut(s) 519
MboII GAAGA 4 cut(s) 163, 517, 526, 529
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 1 cut(s) 444
MlyI GAGTC 2 cut(s) 221, 228
MnlI CCTC 3 cut(s) 195, 298, 403
Mph1103I ATGCAT 1 cut(s) 33
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 3 cut(s) 6, 56, 162
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 4 cut(s) 166, 203, 231, 261
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 130, 257
NdeII GATC 1 cut(s) 519
NlaIII CATG 4 cut(s) 17, 31, 35, 115
NlaIV GGNNCC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 33
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 2 cut(s) 120, 123
PleI GAGTC 2 cut(s) 221, 227
PpsI GAGTC 2 cut(s) 221, 227
PshBI ATTAAT 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 2 cut(s) 285, 329
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 3 cut(s) 6, 56, 162
SatI GCNGC 2 cut(s) 119, 122
Sau3AI GATC 1 cut(s) 519
Sau96I GGNCC 2 cut(s) 285, 329
SchI GAGTC 2 cut(s) 221, 228
SduI GDGCHC 1 cut(s) 439
SetI ASST 7 cut(s) 78, 126, 327, 339, 347, 436, 488
SfaNI GCATC 1 cut(s) 445
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 204
SphI GCATGC 1 cut(s) 31
Sse9I AATT 1 cut(s) 444
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 67, 100
TasI AATT 1 cut(s) 444
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 3 cut(s) 6, 56, 162
Tru9I TTAA 3 cut(s) 6, 56, 162
TseI GCWGC 2 cut(s) 118, 121
TspDTI ATGAA 6 cut(s) 30, 48, 71, 80, 128, 301
VneI GTGCAC 1 cut(s) 435
VspI ATTAAT 1 cut(s) 56
XapI RAATTY 1 cut(s) 444
XceI RCATGY 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.